ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl12h05 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY111501.1| Zea mays CL31834_1 mRNA sequence Length = 621 Score = 69.9 bits (35), Expect = 5e-09 Identities = 71/83 (85%) Strand = Plus / Minus Query: 232 catgcctgcgttccacgcgtacggagatggcgggtgcctcgtctctgccccggccgagct 291 |||||||||| || |||| |||||||||| ||||||||||||||| || ||||| ||||| Sbjct: 407 catgcctgcgctctacgcttacggagatgacgggtgcctcgtctcggcgccggctgagct 348 Query: 292 ttccgggatgttctgccgcggcg 314 |||| | ||||||||||||| Sbjct: 347 ggccggactcttctgccgcggcg 325
>ref|XM_464514.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2525 Score = 65.9 bits (33), Expect = 8e-08 Identities = 57/65 (87%) Strand = Plus / Plus Query: 253 cggagatggcgggtgcctcgtctctgccccggccgagctttccgggatgttctgccgcgg 312 ||||||||| ||||| ||||| || || ||||| ||||| ||||||||||||||||||| Sbjct: 219 cggagatggagggtgtctcgtgtcggcgccggcggagctggccgggatgttctgccgcgg 278 Query: 313 cggcg 317 ||||| Sbjct: 279 cggcg 283
>ref|XM_464515.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2981 Score = 65.9 bits (33), Expect = 8e-08 Identities = 57/65 (87%) Strand = Plus / Plus Query: 253 cggagatggcgggtgcctcgtctctgccccggccgagctttccgggatgttctgccgcgg 312 ||||||||| ||||| ||||| || || ||||| ||||| ||||||||||||||||||| Sbjct: 228 cggagatggagggtgtctcgtgtcggcgccggcggagctggccgggatgttctgccgcgg 287 Query: 313 cggcg 317 ||||| Sbjct: 288 cggcg 292
>dbj|AK067705.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116M10, full insert sequence Length = 2525 Score = 65.9 bits (33), Expect = 8e-08 Identities = 57/65 (87%) Strand = Plus / Plus Query: 253 cggagatggcgggtgcctcgtctctgccccggccgagctttccgggatgttctgccgcgg 312 ||||||||| ||||| ||||| || || ||||| ||||| ||||||||||||||||||| Sbjct: 219 cggagatggagggtgtctcgtgtcggcgccggcggagctggccgggatgttctgccgcgg 278 Query: 313 cggcg 317 ||||| Sbjct: 279 cggcg 283
>dbj|AK065056.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001J06, full insert sequence Length = 6528 Score = 65.9 bits (33), Expect = 8e-08 Identities = 57/65 (87%) Strand = Plus / Plus Query: 253 cggagatggcgggtgcctcgtctctgccccggccgagctttccgggatgttctgccgcgg 312 ||||||||| ||||| ||||| || || ||||| ||||| ||||||||||||||||||| Sbjct: 225 cggagatggagggtgtctcgtgtcggcgccggcggagctggccgggatgttctgccgcgg 284 Query: 313 cggcg 317 ||||| Sbjct: 285 cggcg 289
>dbj|AK064800.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000D06, full insert sequence Length = 2981 Score = 65.9 bits (33), Expect = 8e-08 Identities = 57/65 (87%) Strand = Plus / Plus Query: 253 cggagatggcgggtgcctcgtctctgccccggccgagctttccgggatgttctgccgcgg 312 ||||||||| ||||| ||||| || || ||||| ||||| ||||||||||||||||||| Sbjct: 228 cggagatggagggtgtctcgtgtcggcgccggcggagctggccgggatgttctgccgcgg 287 Query: 313 cggcg 317 ||||| Sbjct: 288 cggcg 292
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 60.0 bits (30), Expect = 5e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 256 agatggcgggtgcctcgtctctgccccggccgagctttccgggatgttctgccgcggcgg 315 |||||| ||||| ||||| || || ||||| ||||| |||||||||||||||||||||| Sbjct: 5630872 agatggagggtgtctcgtgtcggcgccggcggagctggccgggatgttctgccgcggcgg 5630813 Query: 316 cg 317 || Sbjct: 5630812 cg 5630811
>dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0419A09 Length = 168064 Score = 60.0 bits (30), Expect = 5e-06 Identities = 54/62 (87%) Strand = Plus / Minus Query: 256 agatggcgggtgcctcgtctctgccccggccgagctttccgggatgttctgccgcggcgg 315 |||||| ||||| ||||| || || ||||| ||||| |||||||||||||||||||||| Sbjct: 58608 agatggagggtgtctcgtgtcggcgccggcggagctggccgggatgttctgccgcggcgg 58549 Query: 316 cg 317 || Sbjct: 58548 cg 58547
>gb|AC164110.4| Mus musculus BAC clone RP23-307N19 from chromosome 12, complete sequence Length = 201050 Score = 46.1 bits (23), Expect = 0.076 Identities = 23/23 (100%) Strand = Plus / Plus Query: 31 tctcatcctcctcttttttccct 53 ||||||||||||||||||||||| Sbjct: 75855 tctcatcctcctcttttttccct 75877
>gb|AC134596.3| Mus musculus BAC clone RP23-435C1 from chromosome 12, complete sequence Length = 193068 Score = 46.1 bits (23), Expect = 0.076 Identities = 23/23 (100%) Strand = Plus / Minus Query: 31 tctcatcctcctcttttttccct 53 ||||||||||||||||||||||| Sbjct: 32364 tctcatcctcctcttttttccct 32342
>gb|BC051101.1| Mus musculus SID1 transmembrane family, member 2, mRNA (cDNA clone MGC:58967 IMAGE:5052849), complete cds Length = 4027 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 181 tcgcgctcttcttcttcttcca 202 |||||||||||||||||||||| Sbjct: 2416 tcgcgctcttcttcttcttcca 2437
>gb|BC006873.1| Mus musculus SID1 transmembrane family, member 2, mRNA (cDNA clone IMAGE:3595651), partial cds Length = 2585 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 181 tcgcgctcttcttcttcttcca 202 |||||||||||||||||||||| Sbjct: 962 tcgcgctcttcttcttcttcca 983
>ref|NM_001040455.1| Homo sapiens SID1 transmembrane family, member 2 (SIDT2), mRNA Length = 3919 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 181 tcgcgctcttcttcttcttcca 202 |||||||||||||||||||||| Sbjct: 2323 tcgcgctcttcttcttcttcca 2344
>ref|NM_172257.1| Mus musculus SID1 transmembrane family, member 2 (Sidt2), mRNA Length = 4277 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 181 tcgcgctcttcttcttcttcca 202 |||||||||||||||||||||| Sbjct: 2629 tcgcgctcttcttcttcttcca 2650
>gb|AC122273.4| Mus musculus BAC clone RP23-228B2 from 9, complete sequence Length = 196627 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 181 tcgcgctcttcttcttcttcca 202 |||||||||||||||||||||| Sbjct: 139676 tcgcgctcttcttcttcttcca 139697
>gb|AY358442.1| Homo sapiens clone DNA66659 multi-transmembrane domain immunoglobulin-like protein (UNQ685) mRNA, complete cds Length = 3940 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 181 tcgcgctcttcttcttcttcca 202 |||||||||||||||||||||| Sbjct: 2332 tcgcgctcttcttcttcttcca 2353
>gb|BC114959.1| Homo sapiens SID1 transmembrane family, member 2, mRNA (cDNA clone IMAGE:40035835), complete cds Length = 1860 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 181 tcgcgctcttcttcttcttcca 202 |||||||||||||||||||||| Sbjct: 414 tcgcgctcttcttcttcttcca 435
>gb|BC114522.1| Homo sapiens SID1 transmembrane family, member 2, mRNA (cDNA clone MGC:138668 IMAGE:40035836), complete cds Length = 3789 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 181 tcgcgctcttcttcttcttcca 202 |||||||||||||||||||||| Sbjct: 2343 tcgcgctcttcttcttcttcca 2364
>dbj|AK075471.1| Homo sapiens cDNA PSEC0165 fis, clone PLACE1010978 Length = 2111 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 181 tcgcgctcttcttcttcttcca 202 |||||||||||||||||||||| Sbjct: 515 tcgcgctcttcttcttcttcca 536
>dbj|AK075137.1| Homo sapiens cDNA FLJ90656 fis, clone PLACE1004637 Length = 2879 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 181 tcgcgctcttcttcttcttcca 202 |||||||||||||||||||||| Sbjct: 1301 tcgcgctcttcttcttcttcca 1322
>emb|CR591296.1| full-length cDNA clone CS0DI041YP20 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1856 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 181 tcgcgctcttcttcttcttcca 202 |||||||||||||||||||||| Sbjct: 308 tcgcgctcttcttcttcttcca 329
>dbj|AK155875.1| Mus musculus B6-derived CD11 +ve dendritic cells cDNA, RIKEN full-length enriched library, clone:F730311O04 product:hypothetical protein, full insert sequence Length = 3687 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 181 tcgcgctcttcttcttcttcca 202 |||||||||||||||||||||| Sbjct: 2529 tcgcgctcttcttcttcttcca 2550
>gb|AF151799.1|AF151799 Homo sapiens CGI-40 protein mRNA, complete cds Length = 3146 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 181 tcgcgctcttcttcttcttcca 202 |||||||||||||||||||||| Sbjct: 2428 tcgcgctcttcttcttcttcca 2449
>dbj|AK215815.1| Mus musculus cDNA, clone:Y2G0136E09, strand:plus, reference:ENSEMBL:Mouse-Transcript- ENST:ENSMUST00000038488, based on BLAT search Length = 221 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 181 tcgcgctcttcttcttcttcca 202 |||||||||||||||||||||| Sbjct: 68 tcgcgctcttcttcttcttcca 89
>emb|BX648437.1|HSM808585 Homo sapiens mRNA; cDNA DKFZp686L17253 (from clone DKFZp686L17253) Length = 3097 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 181 tcgcgctcttcttcttcttcca 202 |||||||||||||||||||||| Sbjct: 1421 tcgcgctcttcttcttcttcca 1442
>gb|BC023957.1| Mus musculus SID1 transmembrane family, member 2, mRNA (cDNA clone MGC:36407 IMAGE:5321190), complete cds Length = 4277 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 181 tcgcgctcttcttcttcttcca 202 |||||||||||||||||||||| Sbjct: 2629 tcgcgctcttcttcttcttcca 2650
>gb|U73638.1|U73638 Human Chromosome 11 Cosmid cSRL16b6, complete sequence Length = 34352 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 181 tcgcgctcttcttcttcttcca 202 |||||||||||||||||||||| Sbjct: 32035 tcgcgctcttcttcttcttcca 32014
>dbj|AP005018.1| Homo sapiens genomic DNA, chromosome 11q clone:RP11-109L13, complete sequences Length = 67000 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 181 tcgcgctcttcttcttcttcca 202 |||||||||||||||||||||| Sbjct: 57184 tcgcgctcttcttcttcttcca 57205
>ref|NM_126078.1| Arabidopsis thaliana unknown protein AT5G66800 mRNA, complete cds Length = 960 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 187 tcttcttcttcttccaaggga 207 ||||||||||||||||||||| Sbjct: 383 tcttcttcttcttccaaggga 403
>gb|AC119813.16| Mus musculus chromosome 14, clone RP23-298L20, complete sequence Length = 169207 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 36 tcctcctcttttttccctgtc 56 ||||||||||||||||||||| Sbjct: 22023 tcctcctcttttttccctgtc 22003
>gb|AC154504.2| Mus musculus BAC clone RP24-92H14 from chromosome 14, complete sequence Length = 234665 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 36 tcctcctcttttttccctgtc 56 ||||||||||||||||||||| Sbjct: 23028 tcctcctcttttttccctgtc 23048
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 187 tcttcttcttcttccaaggga 207 ||||||||||||||||||||| Sbjct: 361049 tcttcttcttcttccaaggga 361069
>gb|AY183459.1| Lupinus angustifolius putative pectin methylesterase mRNA, complete cds Length = 1112 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 198 ttccaagggatcccatccttc 218 ||||||||||||||||||||| Sbjct: 808 ttccaagggatcccatccttc 788
>gb|AY209001.1| Lupinus angustifolius pectin methylesterase mRNA, complete cds Length = 1111 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 198 ttccaagggatcccatccttc 218 ||||||||||||||||||||| Sbjct: 808 ttccaagggatcccatccttc 788
>gb|AY084283.1| Arabidopsis thaliana clone 102248 mRNA, complete sequence Length = 960 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 187 tcttcttcttcttccaaggga 207 ||||||||||||||||||||| Sbjct: 383 tcttcttcttcttccaaggga 403
>dbj|AP006061.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0414D03 Length = 169823 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 187 tcttcttcttcttccaaggga 207 ||||||||||||||||||||| Sbjct: 109648 tcttcttcttcttccaaggga 109668
>dbj|AB010700.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MUD21 Length = 69850 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 187 tcttcttcttcttccaaggga 207 ||||||||||||||||||||| Sbjct: 14283 tcttcttcttcttccaaggga 14303
>ref|NM_187376.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1203 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 295 cgggatgttctgccgcggcggcgg 318 ||||||||||||| |||||||||| Sbjct: 1140 cgggatgttctgcggcggcggcgg 1163
>ref|XM_472540.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1473 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 tcgcgctcttcttcttcttc 200 |||||||||||||||||||| Sbjct: 923 tcgcgctcttcttcttcttc 942
>gb|AY022847.1| Oryza sativa microsatellite MRG5172 containing (CGG)X8, closest to marker R93, genomic sequence Length = 224 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 tcgcgctcttcttcttcttc 200 |||||||||||||||||||| Sbjct: 181 tcgcgctcttcttcttcttc 200
>gb|AC093439.2| Drosophila melanogaster clone BACR28A12, complete sequence Length = 186444 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 cgcgctcttcttcttcttcc 201 |||||||||||||||||||| Sbjct: 160339 cgcgctcttcttcttcttcc 160358
>gb|AC158968.3| Mus musculus chromosome 1, clone RP23-411D16, complete sequence Length = 183663 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 ctcatcctcctcttttttcc 51 |||||||||||||||||||| Sbjct: 144680 ctcatcctcctcttttttcc 144661
>gb|AY163006.1| Trichogramma nr. brassicae LJT-2003 strain BNYAN internal transcribed spacer 2, complete sequence Length = 424 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 cgcgctcttcttcttcttcc 201 |||||||||||||||||||| Sbjct: 73 cgcgctcttcttcttcttcc 92
>gb|AY163004.1| Trichogramma nr. brassicae LJT-2003 strain BNCOR internal transcribed spacer 2, complete sequence Length = 428 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 cgcgctcttcttcttcttcc 201 |||||||||||||||||||| Sbjct: 78 cgcgctcttcttcttcttcc 97
>gb|AY163003.1| Trichogramma nr. brassicae LJT-2003 strain BNCOL internal transcribed spacer 2, complete sequence Length = 425 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 cgcgctcttcttcttcttcc 201 |||||||||||||||||||| Sbjct: 74 cgcgctcttcttcttcttcc 93
>emb|AL606458.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084A10, complete sequence Length = 144811 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 tcgcgctcttcttcttcttc 200 |||||||||||||||||||| Sbjct: 9562 tcgcgctcttcttcttcttc 9581
>emb|AL589765.19| Human DNA sequence from clone RP11-98D18 on chromosome 1 Contains the 3' end of the SNX27 gene for sorting nexin family member 27, the TNRC4 gene for trinucleotide repeat containing 4, five novel genes, a ribosomal protein S11 (RPS11) pseudogene, the MRPL9 gene for mitochondrial ribosomal protein L9, the OAZ3 gene for ornithine decarboxylase antizyme 3, a novel gene (FLJ36032) the TDRKH gene for tudor and KH domain containing, the RORC gene for RAR-related orphan receptor C and four CpG islands, complete sequence Length = 163389 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 ttccaagggatcccatcctt 217 |||||||||||||||||||| Sbjct: 86254 ttccaagggatcccatcctt 86235
>dbj|AK125876.1| Homo sapiens cDNA FLJ43888 fis, clone TESTI4009306, moderately similar to Homo sapiens ornithine decarboxylase antizyme 3 (OAZ3) Length = 3786 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 ttccaagggatcccatcctt 217 |||||||||||||||||||| Sbjct: 300 ttccaagggatcccatcctt 281
>gb|AC005396.3| Arabidopsis thaliana chromosome 2 clone T26I20 map mi398, complete sequence Length = 85214 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 ctcttcttcttcttccaagg 205 |||||||||||||||||||| Sbjct: 34713 ctcttcttcttcttccaagg 34694
>gb|DP000035.1| Oryctolagus cuniculus target 116 genomic scaffold Length = 434755 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 31 tctcatcctcctcttttttccctg 54 ||||||||||||||| |||||||| Sbjct: 423797 tctcatcctcctcttctttccctg 423774
>gb|AY244468.1| Trichogramma ivelae internal transcribed spacer 2, complete sequence Length = 455 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 cgcgctcttcttcttcttcc 201 |||||||||||||||||||| Sbjct: 73 cgcgctcttcttcttcttcc 92
>gb|AC084756.3|AC084756 Homo sapiens chromosome 15 clone RP11-120K9 map 15q21.2, complete sequence Length = 166138 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 gcgctcttcttcttcttcca 202 |||||||||||||||||||| Sbjct: 16957 gcgctcttcttcttcttcca 16938
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 tcgcgctcttcttcttcttc 200 |||||||||||||||||||| Sbjct: 21359812 tcgcgctcttcttcttcttc 21359831
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 295 cgggatgttctgccgcggcggcgg 318 ||||||||||||| |||||||||| Sbjct: 18605239 cgggatgttctgcggcggcggcgg 18605216
>gb|AC012170.6|AC012170 Homo sapiens chromosome 15 clone RP11-562A8 map 15q21.1, complete sequence Length = 198550 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 gcgctcttcttcttcttcca 202 |||||||||||||||||||| Sbjct: 186836 gcgctcttcttcttcttcca 186817
>dbj|AP004006.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1197_D06 Length = 103844 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 295 cgggatgttctgccgcggcggcgg 318 ||||||||||||| |||||||||| Sbjct: 30293 cgggatgttctgcggcggcggcgg 30270
>dbj|AP004259.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0005E02 Length = 89380 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 295 cgggatgttctgccgcggcggcgg 318 ||||||||||||| |||||||||| Sbjct: 57781 cgggatgttctgcggcggcggcgg 57758
>dbj|AK106337.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-101-G03, full insert sequence Length = 1384 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 tcgcgctcttcttcttcttc 200 |||||||||||||||||||| Sbjct: 577 tcgcgctcttcttcttcttc 596
>dbj|AK072050.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013110C07, full insert sequence Length = 1340 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 tcgcgctcttcttcttcttc 200 |||||||||||||||||||| Sbjct: 559 tcgcgctcttcttcttcttc 578
>gb|AC138285.8| Mus musculus chromosome 1, clone RP24-383G22, complete sequence Length = 216104 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 32 ctcatcctcctcttttttcc 51 |||||||||||||||||||| Sbjct: 47192 ctcatcctcctcttttttcc 47173
>gb|AE003637.3| Drosophila melanogaster chromosome 2L, section 46 of 83 of the complete sequence Length = 222787 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 cgcgctcttcttcttcttcc 201 |||||||||||||||||||| Sbjct: 48768 cgcgctcttcttcttcttcc 48787
>gb|AC005891.1|AC005891 Drosophila melanogaster, chromosome 2L, region 33F3-34A2, P1 clones DS08479 and DS07153, complete sequence Length = 136933 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 182 cgcgctcttcttcttcttcc 201 |||||||||||||||||||| Sbjct: 8742 cgcgctcttcttcttcttcc 8761
>gb|U51918.1|PSU51918 Pisum sativum mitochondrial pyruvate dehydrogenase E1 alpha subunit mRNA, complete cds Length = 1630 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 187 tcttcttcttcttccaagggatcc 210 ||||||||||||||||| |||||| Sbjct: 251 tcttcttcttcttccaacggatcc 274
>emb|AL663038.7| Human DNA sequence from clone XXbac-47E12 on chromosome 6, complete sequence Length = 151964 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 gcgctcttcttcttcttcca 202 |||||||||||||||||||| Sbjct: 101413 gcgctcttcttcttcttcca 101394 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,309,669 Number of Sequences: 3902068 Number of extensions: 3309669 Number of successful extensions: 673928 Number of sequences better than 10.0: 64 Number of HSP's better than 10.0 without gapping: 64 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 673260 Number of HSP's gapped (non-prelim): 668 length of query: 352 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 330 effective length of database: 17,147,199,772 effective search space: 5658575924760 effective search space used: 5658575924760 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
