ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl12h02 |
|---|---|
| Clone Library Name | barley_pub |
>Y2162_ARATH (O22224) Protein At2g41620| Length = 861 Score = 157 bits (397), Expect = 6e-39 Identities = 79/101 (78%), Positives = 91/101 (90%) Frame = +2 Query: 44 WSELLNTSTKLLEQAALTPHFPALHRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAR 223 W++LL++S+KLLEQAA + FP L RNLDQLE LS KLKAKT+R EAPSQS++ATRLLAR Sbjct: 10 WTDLLHSSSKLLEQAAPSSQFPPLQRNLDQLEALSKKLKAKTLRNEAPSQSIAATRLLAR 69 Query: 224 EGINAEQLTRDLKSFELKTTFEDVFPSESTSVEEYLXQLHE 346 EGINAEQL RDLKSFELKTTFEDVFP+E+TSVEEYL Q+HE Sbjct: 70 EGINAEQLARDLKSFELKTTFEDVFPAEATSVEEYLQQVHE 110
>NUP93_XENLA (Q7ZX96) Nuclear pore complex protein Nup93 (Nucleoporin Nup93) (93| kDa nucleoporin) (An4a) Length = 820 Score = 49.3 bits (116), Expect = 2e-06 Identities = 26/97 (26%), Positives = 52/97 (53%), Gaps = 1/97 (1%) Frame = +2 Query: 44 WSELLNTSTKLLEQAALTPHFPALHRNLDQLEVLSTKLKAKTI-RAEAPSQSLSATRLLA 220 + ELL + +L + P + RNL +++ +L++KT+ R S ++ A+ LL Sbjct: 6 FGELLQQAEQLAAETEGVTELPHVERNLQEIQQAGERLRSKTMTRTSQESANVKASVLLG 65 Query: 221 REGINAEQLTRDLKSFELKTTFEDVFPSESTSVEEYL 331 G++ +++ L+S TTFE + P + T ++ +L Sbjct: 66 SRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFL 102
>NUP93_BRARE (Q7ZU29) Nuclear pore complex protein Nup93 (Nucleoporin Nup93) (93| kDa nucleoporin) (Dead eye protein) Length = 820 Score = 47.0 bits (110), Expect = 1e-05 Identities = 24/97 (24%), Positives = 51/97 (52%), Gaps = 1/97 (1%) Frame = +2 Query: 44 WSELLNTSTKLLEQAALTPHFPALHRNLDQLEVLSTKLKAKTI-RAEAPSQSLSATRLLA 220 + ELL + +L + P + RNL +++ +L+++T+ R + + A+ LL Sbjct: 6 FGELLQQAEQLAAETEAVSELPHVERNLQEIQQAGERLRSRTLTRTSQDTADVKASILLG 65 Query: 221 REGINAEQLTRDLKSFELKTTFEDVFPSESTSVEEYL 331 G++ +++ L+S TTFE + P + T ++ +L Sbjct: 66 SRGLDIFHISQRLESLSAATTFEPLEPVKDTDIQGFL 102
>NUP93_MOUSE (Q8BJ71) Nuclear pore complex protein Nup93 (Nucleoporin Nup93) (93| kDa nucleoporin) (CBP-interacting protein 4) Length = 819 Score = 46.6 bits (109), Expect = 2e-05 Identities = 24/97 (24%), Positives = 51/97 (52%), Gaps = 1/97 (1%) Frame = +2 Query: 44 WSELLNTSTKLLEQAALTPHFPALHRNLDQLEVLSTKLKAKTI-RAEAPSQSLSATRLLA 220 + ELL + +L + P + RNL +++ +L+++T+ R + + A+ LL Sbjct: 6 FGELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRSRTLTRTSQETADVKASVLLG 65 Query: 221 REGINAEQLTRDLKSFELKTTFEDVFPSESTSVEEYL 331 G++ +++ L+S TTFE + P + T ++ +L Sbjct: 66 SRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFL 102
>NUP93_HUMAN (Q8N1F7) Nuclear pore complex protein Nup93 (Nucleoporin Nup93) (93| kDa nucleoporin) Length = 819 Score = 46.6 bits (109), Expect = 2e-05 Identities = 24/97 (24%), Positives = 51/97 (52%), Gaps = 1/97 (1%) Frame = +2 Query: 44 WSELLNTSTKLLEQAALTPHFPALHRNLDQLEVLSTKLKAKTI-RAEAPSQSLSATRLLA 220 + ELL + +L + P + RNL +++ +L+++T+ R + + A+ LL Sbjct: 6 FGELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRSRTLTRTSQETADVKASVLLG 65 Query: 221 REGINAEQLTRDLKSFELKTTFEDVFPSESTSVEEYL 331 G++ +++ L+S TTFE + P + T ++ +L Sbjct: 66 SRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGFL 102
>ADRB1_RAT (P18090) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1| adrenoreceptor) Length = 466 Score = 33.1 bits (74), Expect = 0.17 Identities = 19/44 (43%), Positives = 21/44 (47%) Frame = +1 Query: 85 GRPHPSLSCPP*EPGPARGALHQAQGQDDPRRGAVTVALRHQVA 216 G P P P PGP R A A G+ RR + VALR Q A Sbjct: 268 GPPRPPSPAPSPSPGPPRPADSLANGRSSKRRPSRLVALREQKA 311
>NP106_SCHPO (O14310) Nucleoporin npp106 (Nuclear pore protein npp106)| Length = 933 Score = 32.7 bits (73), Expect = 0.23 Identities = 21/84 (25%), Positives = 40/84 (47%) Frame = +2 Query: 92 LTPHFPALHRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAREGINAEQLTRDLKSFE 271 L P P + L+QLE + L++K + A LLA G+NAEQ + + S Sbjct: 40 LEPQVPVIQYGLNQLEEKARNLESKVLLTR--DGDTKAHYLLAESGMNAEQTRQKIYSIH 97 Query: 272 LKTTFEDVFPSESTSVEEYLXQLH 343 + + ++ + + + E+ +L+ Sbjct: 98 IHSPWDQLELDKKSLYEQPHTKLY 121
>ARGC_CORGL (Q59279) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)| (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase) (NAGSA dehydrogenase) Length = 347 Score = 32.0 bits (71), Expect = 0.39 Identities = 18/67 (26%), Positives = 29/67 (43%) Frame = +2 Query: 101 HFPALHRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAREGINAEQLTRDLKSFELKT 280 H P + +NL ++ K+ + A P L+ +EG+ AEQ + F + Sbjct: 212 HTPEIAQNLGEVSDKPVKVSFTPVLAPLPRGILTTATAPLKEGVTAEQARAVYEEFYAQE 271 Query: 281 TFEDVFP 301 TF V P Sbjct: 272 TFVHVLP 278
>DRL20_ARATH (Q9SH22) Putative disease resistance protein At1g63360| Length = 884 Score = 31.6 bits (70), Expect = 0.51 Identities = 20/67 (29%), Positives = 34/67 (50%) Frame = +2 Query: 125 LDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAREGINAEQLTRDLKSFELKTTFEDVFPS 304 L+ LE+L+T + + + + + LS +RLL G + L R L+S + T F Sbjct: 663 LEHLEILTTTIDPRAKQFLSSHRLLSHSRLLEIYGSSVSSLNRHLESLSVSTDKLREFQI 722 Query: 305 ESTSVEE 325 +S S+ E Sbjct: 723 KSCSISE 729
>UAFA_STAS1 (Q4A0V8) Uro-adherence factor A precursor| Length = 2316 Score = 30.8 bits (68), Expect = 0.86 Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 4/101 (3%) Frame = +2 Query: 47 SELLNTSTKLLEQAALTPHFPALHRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAR- 223 SE L+ S + E +L+ +L + E LST + + + S+SLSA+ L+ Sbjct: 1210 SESLSASESISESESLSAS-----ESLSEYESLSTSESLSSSESLSESESLSASESLSES 1264 Query: 224 EGINAEQL---TRDLKSFELKTTFEDVFPSESTSVEEYLXQ 337 E ++A + + L E +T E + SES S E L + Sbjct: 1265 ESLSASESISESESLSESESLSTSESLSASESLSESESLSE 1305 Score = 28.9 bits (63), Expect = 3.3 Identities = 26/97 (26%), Positives = 44/97 (45%) Frame = +2 Query: 47 SELLNTSTKLLEQAALTPHFPALHRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLARE 226 SE ++ S L E +++ ++ + E LST T + + S+SLSA+ L+ Sbjct: 1846 SESISASESLSESESISAS-----ESISESESLSTSESLSTSESLSESESLSASESLSES 1900 Query: 227 GINAEQLTRDLKSFELKTTFEDVFPSESTSVEEYLXQ 337 +E + L E + E + SES S E L + Sbjct: 1901 ESLSE--SESLSESESLSESESLSASESLSASESLSE 1935 Score = 27.3 bits (59), Expect = 9.5 Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 3/100 (3%) Frame = +2 Query: 47 SELLNTSTKLLEQAALTPHFPALHRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLARE 226 SE L+ S + E +L+ +L + E LST + ++E+ SQSLS L A E Sbjct: 1696 SESLSASESISESESLSES-----ESLSESESLSTSESLR--QSESLSQSLS---LSASE 1745 Query: 227 GINAEQL---TRDLKSFELKTTFEDVFPSESTSVEEYLXQ 337 ++A + + L E + E + SES S E L + Sbjct: 1746 SLSASESISESESLSESESLSASESLSESESLSASESLSE 1785
>RPOB_MESFL (Q6F0L7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1284 Score = 30.4 bits (67), Expect = 1.1 Identities = 19/53 (35%), Positives = 30/53 (56%) Frame = +2 Query: 80 EQAALTPHFPALHRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAREGINA 238 E+ + F ++H + LEV +TK A+ I +E P+ S +A + L EGI A Sbjct: 849 ERVIMEDKFTSVHIDEYVLEVRNTKQGAEEITSEIPNISDNAKKYLDNEGIVA 901
>AMC1_ORYSA (P27940) Alpha-amylase isozyme C (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) (Isozyme 1B) Length = 348 Score = 30.0 bits (66), Expect = 1.5 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = -2 Query: 230 SPRAPATWWRRATVTAPRRGSSWP 159 SPRA W+R+T P R S WP Sbjct: 192 SPRATPPTWQRSTSMPPSRASPWP 215
>POLN_HEVPA (P33424) Non-structural polyprotein (EC 2.7.7.48) (RNA-directed RNA| polymerase/Helicase) Length = 1693 Score = 29.6 bits (65), Expect = 1.9 Identities = 17/49 (34%), Positives = 22/49 (44%) Frame = +1 Query: 79 RAGRPHPSLSCPP*EPGPARGALHQAQGQDDPRRGAVTVALRHQVAGAR 225 RA P P+ PP P P+ A+G+ P A A+ HQ A R Sbjct: 730 RAATPTPAAPLPPPAPDPSPTLSAPARGEPAPGATARAPAITHQTARHR 778
>TSKS_HUMAN (Q9UJT2) Testis-specific serine kinase substrate (Testis-specific| kinase substrate) (STK22 substrate 1) Length = 592 Score = 29.6 bits (65), Expect = 1.9 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 2/90 (2%) Frame = +2 Query: 77 LEQAALTPHFPALHRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAREGINAEQ--LT 250 ++Q LTP P+ R ++ L + AK +RAEA S +L RL E + A+ LT Sbjct: 479 VKQRGLTPACPSCQRLHKKILELERQALAKHVRAEALSSTL---RLAQDEALRAKNLLLT 535 Query: 251 RDLKSFELKTTFEDVFPSESTSVEEYLXQL 340 +K E T D + S+ ++L L Sbjct: 536 DKMKPEEKMATL-DHLHLKMCSLHDHLSNL 564
>UBP24_HUMAN (Q9UPU5) Ubiquitin carboxyl-terminal hydrolase 24 (EC 3.1.2.15)| (Ubiquitin thioesterase 24) (Ubiquitin-specific-processing protease 24) (Deubiquitinating enzyme 24) Length = 1870 Score = 29.3 bits (64), Expect = 2.5 Identities = 24/74 (32%), Positives = 36/74 (48%) Frame = +2 Query: 92 LTPHFPALHRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAREGINAEQLTRDLKSFE 271 L P PA+ LDQL+ L K KT+ +E+ SQS + L +++Q + S Sbjct: 357 LIPTDPAIQEALDQLDSLGRK---KTLLSESSSQSSKSPSL------SSKQQHQPSASSI 407 Query: 272 LKTTFEDVFPSEST 313 L++ F P ST Sbjct: 408 LESLFRSFAPGMST 421
>BAGS_BOMMO (Q9BLJ6) BAG domain-containing protein Samui| Length = 677 Score = 28.9 bits (63), Expect = 3.3 Identities = 21/81 (25%), Positives = 30/81 (37%) Frame = +1 Query: 88 RPHPSLSCPP*EPGPARGALHQAQGQDDPRRGAVTVALRHQVAGARGDQC*AAHQRPQVI 267 R H S+S PP P + ++H Q Q G +RH G +P + Sbjct: 166 RTHRSMSAPPDTPNQTKMSVHNHQEQTHQPHGETQSNVRHIPIFVEG------RDKPVIN 219 Query: 268 RTQDHL*GCFSIGKHFCRGIP 330 ++ DH G HF P Sbjct: 220 KSVDH-------GTHFGEAKP 233
>ADA12_HUMAN (O43184) ADAM 12 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 12) (Meltrin alpha) Length = 909 Score = 28.9 bits (63), Expect = 3.3 Identities = 19/37 (51%), Positives = 22/37 (59%) Frame = +1 Query: 64 LHQAPRAGRPHPSLSCPP*EPGPARGALHQAQGQDDP 174 LH+APRA PS+ P P PA+ AL QAQG P Sbjct: 822 LHRAPRA----PSV---PARPLPAKPALRQAQGTCKP 851
>CG021_MOUSE (Q9JMG3) Protein C7orf21 homolog| Length = 245 Score = 28.9 bits (63), Expect = 3.3 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%) Frame = +1 Query: 61 HLHQAPRAGRPHPSLSCPP-*EPGPA 135 H H + R G PHP CPP EPGP+ Sbjct: 167 HCHVSTRVGPPHP--PCPPGSEPGPS 190
>YG1F_YEAST (P53214) Hypothetical 57.5 kDa protein in VMA7-RPS25A intergenic| region Length = 551 Score = 28.9 bits (63), Expect = 3.3 Identities = 24/72 (33%), Positives = 39/72 (54%) Frame = -1 Query: 348 IS*SCXRYSSTEVLSDGKTSSKVVLSSNDLRSLVSCSALIPSRASNLVAESDCDGASARI 169 +S S SS+EV S +SS + S+ +++S S+ +P+ VA + AS+ + Sbjct: 110 VSSSSTSSSSSEVTSSSSSSS--ISPSSSSSTIISSSSSLPTFT---VASTSSTVASSTL 164 Query: 168 VLALSLVESTSS 133 + SLV STSS Sbjct: 165 STSSSLVISTSS 176
>DNAS1_CHICK (Q9YGI5) Deoxyribonuclease-1 precursor (EC 3.1.21.1)| (Deoxyribonuclease I) (DNase I) Length = 282 Score = 28.5 bits (62), Expect = 4.3 Identities = 13/24 (54%), Positives = 14/24 (58%) Frame = -1 Query: 261 LRSLVSCSALIPSRASNLVAESDC 190 LRSL SC LIP A V +DC Sbjct: 206 LRSLSSCEWLIPDSADTTVTSTDC 229
>PHZI_PSEFL (Q51785) Autoinducer synthesis protein phzI| Length = 196 Score = 28.5 bits (62), Expect = 4.3 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%) Frame = -1 Query: 288 SKVVLSSNDLRSLVSCSALIPSRASNL---VAESDCDGASAR 172 ++ +L+ N+ RS+V C+ LIP+ NL V C GA R Sbjct: 54 ARYLLAFNEHRSIVGCARLIPTTFPNLLEGVFSHACAGAPPR 95
>ADRB1_MOUSE (P34971) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1| adrenoreceptor) Length = 466 Score = 28.5 bits (62), Expect = 4.3 Identities = 18/44 (40%), Positives = 20/44 (45%) Frame = +1 Query: 85 GRPHPSLSCPP*EPGPARGALHQAQGQDDPRRGAVTVALRHQVA 216 G P P PGP R A A G+ RR + VALR Q A Sbjct: 268 GPARPPSPEPSPSPGPPRPADSLANGRSSKRRPSRLVALREQKA 311
>RPOB_MYCMS (Q6MRX6) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1291 Score = 27.7 bits (60), Expect = 7.3 Identities = 18/53 (33%), Positives = 26/53 (49%) Frame = +2 Query: 80 EQAALTPHFPALHRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAREGINA 238 E+ + F + H + LEV +TK + + E P+ S A R L EGI A Sbjct: 850 ERIVIDDRFTSTHIDEYTLEVRNTKQGQEEVIREIPNMSEQAKRHLDAEGIVA 902
>PDXT_METAC (Q8TQH7) Glutamine amidotransferase subunit pdxT (EC 2.6.-.-)| (Glutamine amidotransferase glutaminase subunit pdxT) Length = 199 Score = 27.7 bits (60), Expect = 7.3 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 8/61 (13%) Frame = +2 Query: 83 QAALTPHFPALHRNLDQ--LEVLSTKLKAKTIRAEAPS------QSLSATRLLAREGINA 238 Q A++ H AL R L + +E ++K K I E +S + RLLAREGI Sbjct: 9 QGAVSEHVDALRRALAERGVEAEVVEIKHKGIVPECSGIVIPGGESTTLCRLLAREGIGE 68 Query: 239 E 241 E Sbjct: 69 E 69
>FAF_DROME (P55824) Probable ubiquitin carboxyl-terminal hydrolase FAF (EC| 3.1.2.15) (Ubiquitin thioesterase FAF) (Ubiquitin specific-processing protease FAF) (Deubiquitinating enzyme FAF) (Protein fat facets) Length = 2778 Score = 27.7 bits (60), Expect = 7.3 Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 5/74 (6%) Frame = +2 Query: 71 KLLEQAALTPHF-PALHRNLDQLEVLSTKLKAKTIRAEAPSQSLS----ATRLLAREGIN 235 +LL A + +F P + LD L+ + + + ++ E + ++ + RLLA Sbjct: 337 ELLMPATIAKYFMPTWNVVLDLLDSFTDEELKREVKPEGRNDYINGIVKSARLLASRLTG 396 Query: 236 AEQLTRDLKSFELK 277 E+L RDL+ F LK Sbjct: 397 QEELIRDLEMFRLK 410
>IOJAP_MAIZE (Q41822) Protein Iojap| Length = 228 Score = 27.7 bits (60), Expect = 7.3 Identities = 18/66 (27%), Positives = 30/66 (45%) Frame = +2 Query: 116 HRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAREGINAEQLTRDLKSFELKTTFEDV 295 HR+ Q + S L T+ A SQS S++ + G +A++L DL + + Sbjct: 39 HRSSPQQPLRSDLLPPATVACRARSQSASSSNVNFGRGDDADKLLEDLLKQHGEVVYSSG 98 Query: 296 FPSEST 313 P + T Sbjct: 99 GPPDPT 104
>RPOB_DEIRA (Q9RVV9) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1179 Score = 27.3 bits (59), Expect = 9.5 Identities = 14/43 (32%), Positives = 23/43 (53%) Frame = +2 Query: 104 FPALHRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAREGI 232 + ++H D++E TKL + I + P S +A R L +GI Sbjct: 759 YTSVHIEKDEIEARDTKLGPEKITRDIPGLSEAALRDLDEDGI 801
>RBP1_PLAVB (Q00798) Reticulocyte binding protein 1 precursor| Length = 2833 Score = 27.3 bits (59), Expect = 9.5 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 5/55 (9%) Frame = +2 Query: 47 SELLNTSTKLLEQA-ALTPHFPALHRNLDQLEVLSTKLKAKTI----RAEAPSQS 196 SE + + K L Q + HF HR LD E L K TI ++EAP +S Sbjct: 2011 SEKVREALKRLSQVEGIRCHFENFHRLLDNTEELENLKKMVTIYRDKKSEAPKES 2065
>METK_WOLSU (Q7M7Z2) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine| adenosyltransferase) (AdoMet synthetase) (MAT) Length = 386 Score = 27.3 bits (59), Expect = 9.5 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = -1 Query: 219 ASNLVAESDCDGASARIVLALSLVESTS 136 A NLVA CD A+ +I A+ +VE S Sbjct: 283 AKNLVASGVCDKATIQIAYAIGVVEPVS 310
>SYE_LACLA (Q9CDZ7) Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA| ligase) (GluRS) Length = 483 Score = 27.3 bits (59), Expect = 9.5 Identities = 8/25 (32%), Positives = 18/25 (72%) Frame = -3 Query: 319 DRSAFRWKNILKGGLEFE*LEVSGE 245 +++ ++W +I+KG +EFE + G+ Sbjct: 162 EKAIYKWNDIVKGDIEFEGKNIGGD 186
>PDXT_METMA (Q8PUA4) Glutamine amidotransferase subunit pdxT (EC 2.6.-.-)| (Glutamine amidotransferase glutaminase subunit pdxT) Length = 199 Score = 27.3 bits (59), Expect = 9.5 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 8/61 (13%) Frame = +2 Query: 83 QAALTPHFPALHRNLDQ--LEVLSTKLKAKTIRAEAPS------QSLSATRLLAREGINA 238 Q A++ H AL R L + +E ++K K I E +S + RLLAREGI Sbjct: 9 QGAVSEHVDALRRALKERGVEAEVVEIKHKGIVPECSGIVIPGGESTTLCRLLAREGIAE 68 Query: 239 E 241 E Sbjct: 69 E 69
>RPOA1_METTH (O27125) DNA-directed RNA polymerase subunit A' (EC 2.7.7.6)| Length = 870 Score = 27.3 bits (59), Expect = 9.5 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +1 Query: 160 GQDDPRRGAVTVALRHQVAGARGDQC 237 G DPR G + +LR + GA+G +C Sbjct: 45 GLMDPRLGVIDPSLRCRTCGAKGGEC 70
>ASCC2_MOUSE (Q91WR3) Activating signal cointegrator 1 complex subunit 2 (ASC-1| complex subunit p100) (Trip4 complex subunit p100) Length = 749 Score = 27.3 bits (59), Expect = 9.5 Identities = 17/58 (29%), Positives = 30/58 (51%) Frame = -1 Query: 309 LSDGKTSSKVVLSSNDLRSLVSCSALIPSRASNLVAESDCDGASARIVLALSLVESTS 136 + D K + S+N++ + +PS+ NL + +C GA+A + A+S VE S Sbjct: 411 IKDIKDPPRAKGSNNEVTVTAEPVSEMPSQLENLEEDEECMGAAAALGPAVSGVELDS 468 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 37,791,775 Number of Sequences: 219361 Number of extensions: 611613 Number of successful extensions: 2335 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 2263 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2331 length of database: 80,573,946 effective HSP length: 91 effective length of database: 60,612,095 effective search space used: 1454690280 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
