ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl12h02 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK099999.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134K18, full insert sequence Length = 3073 Score = 353 bits (178), Expect = 2e-94 Identities = 282/317 (88%) Strand = Plus / Plus Query: 32 gagatgggcggctggtcagagcttctcaacacctccaccaagctcctcgagcaggccgcc 91 ||||||||||| ||||| ||||| ||| || ||||||| ||||||||||||||||||||| Sbjct: 121 gagatgggcgggtggtcggagctcctccactcctccactaagctcctcgagcaggccgcc 180 Query: 92 ctcacccctcactttcctgccctccataggaacctggaccagctcgaggtgctctccacc 151 | |||||| ||||| ||| ||||||| ||||||||||||||||| ||||||||||||||| Sbjct: 181 cccaccccgcacttccctcccctccagaggaacctggaccagctggaggtgctctccacc 240 Query: 152 aagctcaaggccaagacgatccgcgccgaggcgccgtcacagtcgctctccgccaccagg 211 |||||||||||||||||| | |||||||||||||| ||||||||||||||||||||| Sbjct: 241 aagctcaaggccaagacggtgcgcgccgaggcgcccgtgcagtcgctctccgccaccagg 300 Query: 212 ttgctggcgcgcgaggggatcaatgctgagcagctcaccagagacctcaagtcattcgaa 271 ||| |||||||||||||||||||||| ||||||||| |||| |||||||| || |||||| Sbjct: 301 ttgttggcgcgcgaggggatcaatgcggagcagctcgccagggacctcaaatccttcgaa 360 Query: 272 ctcaagaccacctttgaggatgtttttccatcggaaagcacttctgtcgaggaatacctg 331 || |||||||| |||||||||||||||||||| ||| ||| |||||||||| |||||| Sbjct: 361 cttaagaccacatttgaggatgtttttccatctgaagcaactactgtcgaggagtacctg 420 Query: 332 ncacagcttcatgaaat 348 |||||||||||||| Sbjct: 421 cagcagcttcatgaaat 437
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 131 bits (66), Expect = 2e-27 Identities = 87/94 (92%) Strand = Plus / Minus Query: 119 aggaacctggaccagctcgaggtgctctccaccaagctcaaggccaagacgatccgcgcc 178 ||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||| Sbjct: 13083466 aggaacctggaccagctggaggtgctctccaccaagctcaaggccaagacggtgcgcgcc 13083407 Query: 179 gaggcgccgtcacagtcgctctccgccaccaggt 212 |||||||| |||||||||||||||||||||| Sbjct: 13083406 gaggcgcccgtgcagtcgctctccgccaccaggt 13083373 Score = 91.7 bits (46), Expect = 1e-15 Identities = 76/86 (88%) Strand = Plus / Minus Query: 32 gagatgggcggctggtcagagcttctcaacacctccaccaagctcctcgagcaggccgcc 91 ||||||||||| ||||| ||||| ||| || ||||||| ||||||||||||||||||||| Sbjct: 13083670 gagatgggcgggtggtcggagctcctccactcctccactaagctcctcgagcaggccgcc 13083611 Query: 92 ctcacccctcactttcctgccctcca 117 | |||||| ||||| ||| ||||||| Sbjct: 13083610 cccaccccgcacttccctcccctcca 13083585 Score = 83.8 bits (42), Expect = 3e-13 Identities = 60/66 (90%) Strand = Plus / Minus Query: 208 caggttgctggcgcgcgaggggatcaatgctgagcagctcaccagagacctcaagtcatt 267 ||||||| |||||||||||||||||||||| ||||||||| |||| |||||||| || || Sbjct: 13083236 caggttgttggcgcgcgaggggatcaatgcggagcagctcgccagggacctcaaatcctt 13083177 Query: 268 cgaact 273 |||||| Sbjct: 13083176 cgaact 13083171 Score = 56.0 bits (28), Expect = 8e-05 Identities = 49/56 (87%) Strand = Plus / Minus Query: 276 agaccacctttgaggatgtttttccatcggaaagcacttctgtcgaggaatacctg 331 ||||||| |||||||||||||||||||| ||| ||| |||||||||| |||||| Sbjct: 13082175 agaccacatttgaggatgtttttccatctgaagcaactactgtcgaggagtacctg 13082120
>gb|AC135257.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1113A07, from chromosome 3, complete sequence Length = 151173 Score = 131 bits (66), Expect = 2e-27 Identities = 87/94 (92%) Strand = Plus / Plus Query: 119 aggaacctggaccagctcgaggtgctctccaccaagctcaaggccaagacgatccgcgcc 178 ||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||| Sbjct: 143172 aggaacctggaccagctggaggtgctctccaccaagctcaaggccaagacggtgcgcgcc 143231 Query: 179 gaggcgccgtcacagtcgctctccgccaccaggt 212 |||||||| |||||||||||||||||||||| Sbjct: 143232 gaggcgcccgtgcagtcgctctccgccaccaggt 143265 Score = 91.7 bits (46), Expect = 1e-15 Identities = 76/86 (88%) Strand = Plus / Plus Query: 32 gagatgggcggctggtcagagcttctcaacacctccaccaagctcctcgagcaggccgcc 91 ||||||||||| ||||| ||||| ||| || ||||||| ||||||||||||||||||||| Sbjct: 142968 gagatgggcgggtggtcggagctcctccactcctccactaagctcctcgagcaggccgcc 143027 Query: 92 ctcacccctcactttcctgccctcca 117 | |||||| ||||| ||| ||||||| Sbjct: 143028 cccaccccgcacttccctcccctcca 143053 Score = 83.8 bits (42), Expect = 3e-13 Identities = 60/66 (90%) Strand = Plus / Plus Query: 208 caggttgctggcgcgcgaggggatcaatgctgagcagctcaccagagacctcaagtcatt 267 ||||||| |||||||||||||||||||||| ||||||||| |||| |||||||| || || Sbjct: 143402 caggttgttggcgcgcgaggggatcaatgcggagcagctcgccagggacctcaaatcctt 143461 Query: 268 cgaact 273 |||||| Sbjct: 143462 cgaact 143467 Score = 56.0 bits (28), Expect = 8e-05 Identities = 49/56 (87%) Strand = Plus / Plus Query: 276 agaccacctttgaggatgtttttccatcggaaagcacttctgtcgaggaatacctg 331 ||||||| |||||||||||||||||||| ||| ||| |||||||||| |||||| Sbjct: 144463 agaccacatttgaggatgtttttccatctgaagcaactactgtcgaggagtacctg 144518
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 131 bits (66), Expect = 2e-27 Identities = 87/94 (92%) Strand = Plus / Minus Query: 119 aggaacctggaccagctcgaggtgctctccaccaagctcaaggccaagacgatccgcgcc 178 ||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||| Sbjct: 13080241 aggaacctggaccagctggaggtgctctccaccaagctcaaggccaagacggtgcgcgcc 13080182 Query: 179 gaggcgccgtcacagtcgctctccgccaccaggt 212 |||||||| |||||||||||||||||||||| Sbjct: 13080181 gaggcgcccgtgcagtcgctctccgccaccaggt 13080148 Score = 91.7 bits (46), Expect = 1e-15 Identities = 76/86 (88%) Strand = Plus / Minus Query: 32 gagatgggcggctggtcagagcttctcaacacctccaccaagctcctcgagcaggccgcc 91 ||||||||||| ||||| ||||| ||| || ||||||| ||||||||||||||||||||| Sbjct: 13080445 gagatgggcgggtggtcggagctcctccactcctccactaagctcctcgagcaggccgcc 13080386 Query: 92 ctcacccctcactttcctgccctcca 117 | |||||| ||||| ||| ||||||| Sbjct: 13080385 cccaccccgcacttccctcccctcca 13080360 Score = 83.8 bits (42), Expect = 3e-13 Identities = 60/66 (90%) Strand = Plus / Minus Query: 208 caggttgctggcgcgcgaggggatcaatgctgagcagctcaccagagacctcaagtcatt 267 ||||||| |||||||||||||||||||||| ||||||||| |||| |||||||| || || Sbjct: 13080011 caggttgttggcgcgcgaggggatcaatgcggagcagctcgccagggacctcaaatcctt 13079952 Query: 268 cgaact 273 |||||| Sbjct: 13079951 cgaact 13079946 Score = 56.0 bits (28), Expect = 8e-05 Identities = 49/56 (87%) Strand = Plus / Minus Query: 276 agaccacctttgaggatgtttttccatcggaaagcacttctgtcgaggaatacctg 331 ||||||| |||||||||||||||||||| ||| ||| |||||||||| |||||| Sbjct: 13078950 agaccacatttgaggatgtttttccatctgaagcaactactgtcgaggagtacctg 13078895
>gb|AC134231.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0006D11, complete sequence Length = 176637 Score = 131 bits (66), Expect = 2e-27 Identities = 87/94 (92%) Strand = Plus / Minus Query: 119 aggaacctggaccagctcgaggtgctctccaccaagctcaaggccaagacgatccgcgcc 178 ||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||||| Sbjct: 161164 aggaacctggaccagctggaggtgctctccaccaagctcaaggccaagacggtgcgcgcc 161105 Query: 179 gaggcgccgtcacagtcgctctccgccaccaggt 212 |||||||| |||||||||||||||||||||| Sbjct: 161104 gaggcgcccgtgcagtcgctctccgccaccaggt 161071 Score = 91.7 bits (46), Expect = 1e-15 Identities = 76/86 (88%) Strand = Plus / Minus Query: 32 gagatgggcggctggtcagagcttctcaacacctccaccaagctcctcgagcaggccgcc 91 ||||||||||| ||||| ||||| ||| || ||||||| ||||||||||||||||||||| Sbjct: 161368 gagatgggcgggtggtcggagctcctccactcctccactaagctcctcgagcaggccgcc 161309 Query: 92 ctcacccctcactttcctgccctcca 117 | |||||| ||||| ||| ||||||| Sbjct: 161308 cccaccccgcacttccctcccctcca 161283 Score = 83.8 bits (42), Expect = 3e-13 Identities = 60/66 (90%) Strand = Plus / Minus Query: 208 caggttgctggcgcgcgaggggatcaatgctgagcagctcaccagagacctcaagtcatt 267 ||||||| |||||||||||||||||||||| ||||||||| |||| |||||||| || || Sbjct: 160934 caggttgttggcgcgcgaggggatcaatgcggagcagctcgccagggacctcaaatcctt 160875 Query: 268 cgaact 273 |||||| Sbjct: 160874 cgaact 160869 Score = 56.0 bits (28), Expect = 8e-05 Identities = 49/56 (87%) Strand = Plus / Minus Query: 276 agaccacctttgaggatgtttttccatcggaaagcacttctgtcgaggaatacctg 331 ||||||| |||||||||||||||||||| ||| ||| |||||||||| |||||| Sbjct: 159873 agaccacatttgaggatgtttttccatctgaagcaactactgtcgaggagtacctg 159818
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 44.1 bits (22), Expect = 0.30 Identities = 25/26 (96%) Strand = Plus / Plus Query: 172 ccgcgccgaggcgccgtcacagtcgc 197 |||||||| ||||||||||||||||| Sbjct: 1339088 ccgcgccgcggcgccgtcacagtcgc 1339113
>gb|AC090064.3| Homo sapiens chromosome 5 clone CTB-43C3, complete sequence Length = 124882 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 241 gcagctcaccagagacctcaa 261 ||||||||||||||||||||| Sbjct: 93519 gcagctcaccagagacctcaa 93539
>gb|AC011407.6| Homo sapiens chromosome 5 clone CTB-54I1, complete sequence Length = 240957 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 241 gcagctcaccagagacctcaa 261 ||||||||||||||||||||| Sbjct: 67614 gcagctcaccagagacctcaa 67634
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 79 cgagcaggccgccctcacccc 99 ||||||||||||||||||||| Sbjct: 3564437 cgagcaggccgccctcacccc 3564457
>gb|AC160538.8| Mus musculus chromosome 15, clone RP24-156D3, complete sequence Length = 158943 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 137 gaggtgctctccaccaagct 156 |||||||||||||||||||| Sbjct: 35514 gaggtgctctccaccaagct 35533
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 gctggcgcgcgaggggatca 233 |||||||||||||||||||| Sbjct: 188132 gctggcgcgcgaggggatca 188151
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 ccaccaagctcaaggccaag 166 |||||||||||||||||||| Sbjct: 869628 ccaccaagctcaaggccaag 869609
>gb|AC131676.2| Mus musculus BAC clone RP23-330L3 from chromosome 6, complete sequence Length = 200673 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 96 cccctcactttcctgccctc 115 |||||||||||||||||||| Sbjct: 191902 cccctcactttcctgccctc 191883
>gb|AC113976.13| Mus musculus chromosome 15, clone RP23-146F23, complete sequence Length = 184010 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 137 gaggtgctctccaccaagct 156 |||||||||||||||||||| Sbjct: 69453 gaggtgctctccaccaagct 69434
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 165 agacgatccgcgccgaggcg 184 |||||||||||||||||||| Sbjct: 1983654 agacgatccgcgccgaggcg 1983673
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 cggcgtcggagccgatggcg 20 |||||||||||||||||||| Sbjct: 1059523 cggcgtcggagccgatggcg 1059542
>gb|AC157098.5| Mus musculus 6 BAC RP24-398G2 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 168496 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 96 cccctcactttcctgccctc 115 |||||||||||||||||||| Sbjct: 139870 cccctcactttcctgccctc 139889
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 ggagccgatggcggaggaga 27 |||||||||||||||||||| Sbjct: 6280661 ggagccgatggcggaggaga 6280680
>dbj|AP004002.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1116_C08 Length = 102317 Score = 40.1 bits (20), Expect = 4.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 ggagccgatggcggaggaga 27 |||||||||||||||||||| Sbjct: 31221 ggagccgatggcggaggaga 31240 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,505,091 Number of Sequences: 3902068 Number of extensions: 2505091 Number of successful extensions: 55280 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54800 Number of HSP's gapped (non-prelim): 475 length of query: 348 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 326 effective length of database: 17,147,199,772 effective search space: 5589987125672 effective search space used: 5589987125672 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
