>NEB1_HUMAN (Q9ULJ8) Neurabin-1 (Neurabin-I) (Neural tissue-specific F-actin|
           binding protein I) (Protein phosphatase 1 regulatory
           subunit 9A)
          Length = 1098

 Score = 33.5 bits (75), Expect = 0.20
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 6/57 (10%)
 Frame = +2

Query: 167 SCCVVAAPSGRGSHESRIPRRRFR------RTEGATKSMEDSVKRKMEQFYEGVDGP 319
           +  V+A   G+G H S  P+RR +      +T+G+   +E SV  ++ +F    DGP
Sbjct: 80  NAAVIAKTRGKGGHSS--PQRRMKPKEFLEKTDGSVVKLESSVSERISRFDTMYDGP 134

>STIL_DROME (P92189) Protein stand still|
          Length = 321

 Score = 31.6 bits (70), Expect = 0.78
 Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +2

Query: 182 AAPSGRGSHESRIP---RRRFRRTEGATKSMEDSVKRK 286
           A PSG  SHE +I    +R  +  EGAT+ +EDS   K
Sbjct: 127 AVPSGNESHELKIKTVFQRHKQEQEGATRKLEDSTSDK 164

>FLAG_VIBPA (Q56704) Protein flaG|
          Length = 144

 Score = 31.2 bits (69), Expect = 1.0
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -3

Query: 204 DPLPEGAATTQHDMEVGAEAERRRSKPQRHREERE 100
           D  P+ A  T+HD  V A  E   S+ + +REERE
Sbjct: 40  DVSPQKAKGTEHDFSVQAAIEMAESRQELNREERE 74

>POLG_PVYHU (Q02963) Genome polyprotein [Contains: P1 proteinase (N-terminal|
           protein); Helper component proteinase (EC 3.4.22.45)
           (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
           inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
           (6K2); Viral ge
          Length = 3061

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +2

Query: 197 RGSHESRIPRRRFRRTEGATKSMEDSVKRKMEQFYEGVDG 316
           RGSHE +I   R + T+G   SM        E F+EG+DG
Sbjct: 259 RGSHEGKIYDARSKVTQGVMDSMVQF--SSAESFWEGLDG 296

>PTPA1_NEUCR (Q7S6M5) Serine/threonine-protein phosphatase 2A activator 1 (EC|
           5.2.1.8) (Peptidyl-prolyl cis-trans isomerase PTPA-1)
           (PPIase PTPA-1) (Rotamase PTPA-1) (Phosphotyrosyl
           phosphatase activator 1)
          Length = 617

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = -1

Query: 353 SPRPPMGGPGGADH--PPPRRTAPS 285
           +P  P GGPGGA H  PPP  + PS
Sbjct: 574 TPFKPAGGPGGAPHTGPPPPESFPS 598

>NPC1_MOUSE (O35604) Niemann-Pick C1 protein precursor|
          Length = 1278

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = +2

Query: 125 GFDRRRSASAPTSISCCVVAAPSGRGSHESRIPRRRFRRTEGATKSMEDSVKRKMEQFYE 304
           G D +R       I CCV  A  G+GSH S     RF +   A   ++D ++  +   + 
Sbjct: 785 GLDIKRQEKNHLDILCCVRGADDGQGSHASESYLFRFFKNYFAPLLLKDWLRPIVVAVFV 844

Query: 305 GV 310
           GV
Sbjct: 845 GV 846

>VCAP_HCMVA (P16729) Major capsid protein (MCP)|
          Length = 1370

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
 Frame = +2

Query: 170  CCVVAAPSGRGSHESRIPRRRFRRTEGATKSMEDSVKRKMEQF--YEGVDG 316
            CCVV AP     +   +P  RF        ++ D +KR + +F  Y   DG
Sbjct: 921  CCVVTAPKTLIEYSLPVPFHRFYSNPTICAALSDDIKRYVTEFPHYHRHDG 971

>PKN1_HUMAN (Q16512) Serine/threonine-protein kinase N1 (EC 2.7.11.13) (Protein|
           kinase C-like 1) (Protein-kinase C-related kinase 1)
           (Protein kinase C-like PKN) (Serine-threonine protein
           kinase N) (Protein kinase PKN-alpha)
          Length = 942

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 362 MPISPRPPMGGPGGADHPPPRRTAPS 285
           +P +P P MGGPG  D  PP  + P+
Sbjct: 340 IPWNPTPSMGGPGTPDSRPPFLSRPA 365

>SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)|
           (GKAP/SAPAP-interacting protein) (SPANK-1) (Synamon)
           (Somatostatin receptor-interacting protein)
           (SSTR-interacting protein) (SSTRIP)
          Length = 2167

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 153 RQPPYHAAWSQLPPAEGLTNPEYPVEGSEEPRVLLRAWKIQSSERWSSS-TRGWMVRPSG 329
           ++ P +AA  + PP  GLT P   +  + +  + L  W + S+   SSS T G    P G
Sbjct: 411 QESPKYAARRRGPPGAGLTVPPALLRANSDTSMALPDWMVFSAPGASSSGTPGPTSGPQG 470

Query: 330 SS 335
            S
Sbjct: 471 QS 472

>RM46_MOUSE (Q9EQI8) 39S ribosomal protein L46, mitochondrial precursor (L46mt)|
           (MRP-L46)
          Length = 283

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +3

Query: 252 LLRAWKIQSSERWSSSTRGWMVRPSGSSHRRPW 350
           L R W+ Q    W+ S+RG  +  + SS R PW
Sbjct: 12  LARGWR-QLDRFWAGSSRGLSLEAASSSSRSPW 43

>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5|
          Length = 388

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 14/28 (50%), Positives = 14/28 (50%)
 Frame = -1

Query: 380 PTSMQFMPISPRPPMGGPGGADHPPPRR 297
           P  M  MP  P P M  PGG   PPP R
Sbjct: 327 PPGMGGMPPPPPPGMRYPGGMPPPPPPR 354

>RSVR_COTJA (P98162) Subgroup A Rous sarcoma virus receptor PG900 precursor|
           (Low density lipoprotein receptor-related protein)
          Length = 157

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +1

Query: 43  PSLPAPGPNLPRRRHGR 93
           P++PAPG  LP R HGR
Sbjct: 86  PTVPAPGRALPARNHGR 102

>MKL2_HUMAN (Q9ULH7) MKL/myocardin-like protein 2 (Myocardin-related|
           transcription factor B) (MRTF-B) (Megakaryoblastic
           leukemia 2)
          Length = 1088

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -1

Query: 377 TSMQFMPISPRPP--MGGPGGADHPPPRRTAP 288
           T  QF  +SP  P  +  P  AD PPPR  AP
Sbjct: 217 TPAQFASVSPTVPEFLKTPPTADQPPPRPAAP 248

>ECM17_YEAST (P47169) Sulfite reductase [NADPH] beta subunit (EC 1.8.1.2)|
           (Extracellular matrix protein 17)
          Length = 1442

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 245 EGATKSMEDSVKRKMEQFYEGVDGPPLRVLPSAALGKSA*IA 370
           +  T+  E   K   +Q  EG+ GPPL V  ++  G +A +A
Sbjct: 656 DALTRKQEKRSKAAFDQLLEGLSGPPLHVYYASDGGNAANLA 697

>COL40_CAEEL (P34804) Cuticle collagen 40|
          Length = 306

 Score = 28.9 bits (63), Expect = 5.0
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -1

Query: 335 GGPGGADHPPPRRTAPSF 282
           G  GG DH PP RTAP +
Sbjct: 289 GSGGGCDHCPPPRTAPGY 306

>NLGN2_HUMAN (Q8NFZ4) Neuroligin-2 precursor|
          Length = 835

 Score = 28.5 bits (62), Expect = 6.6
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
 Frame = -1

Query: 383 FPTSMQFMPIS----PRPPMGGPGGADHPPPRRTAP 288
           F T+ +  P +    PRPP G PG    PPP    P
Sbjct: 616 FTTTTRLPPYATRWPPRPPAGAPGTRRPPPPATLPP 651

>ASF1_HELAN (P22357) Anther-specific protein SF18 precursor (Fragment)|
          Length = 161

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 350 PRPPMGGPGGADHPPPRRTAP 288
           P PP  G G A HPPP  + P
Sbjct: 85  PAPPGKGEGDAPHPPPTPSPP 105

>COL14_CAEEL (P18834) Cuticle collagen 14|
          Length = 345

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 335 GGPGGADHPPPRRTAPSF 282
           G PG  DH PP R AP +
Sbjct: 328 GAPGSCDHCPPARLAPGY 345

>VPRT_MMTVB (P10271) Protease (EC 3.4.23.-)|
          Length = 274

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -2

Query: 415 PLHQSEYNGHSSRRACNSCRFPQGRRW--EDPEGRTIHPLV 299
           P+HQ+E +      AC   R  Q  RW  ED  G  IHP V
Sbjct: 203 PIHQTESSLQGLGMACGVARSSQPLRWQHEDKSG-IIHPFV 242

>SMR1_MOUSE (Q61900) Submaxillary gland androgen-regulated protein 1 precursor|
           (Salivary protein MSG1)
          Length = 147

 Score = 28.1 bits (61), Expect = 8.6
 Identities = 12/20 (60%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = -1

Query: 359 PISPRPPMGGPG-GADHPPP 303
           P  P PP  GPG G  HPPP
Sbjct: 34  PFPPPPPPHGPGIGRPHPPP 53


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,650,176
Number of Sequences: 219361
Number of extensions: 1172574
Number of successful extensions: 5428
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 4545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5374
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2228238148
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)