ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl12g12 |
|---|---|
| Clone Library Name | barley_pub |
>MSC1_SCHPO (Q9UT79) Multicopy suppressor of chk1 protein 1| Length = 1588 Score = 33.1 bits (74), Expect = 0.18 Identities = 33/107 (30%), Positives = 48/107 (44%), Gaps = 15/107 (14%) Frame = -2 Query: 334 KQKLACSLSDPPLTPISRTQPASLWGQGLRRRTTTTSLAVGRRTRTGVPCQS----LRKL 167 K++L L+ PLT S T+ + RRT +TS G T+ + S L L Sbjct: 374 KKQLPSFLAQTPLTLPSNTKTPPASARQSSRRTRSTS-GKGFETKISINLDSDIKLLNTL 432 Query: 166 SP-----WVLSLPLSFTSSAP------QLPTPPIRGSVERRSSVPTS 59 SP W S P + ++S+P LPT P+ G ++ PTS Sbjct: 433 SPLETFFWCCSFPSTASTSSPFSYYPESLPT-PLLGRAVNTTAFPTS 478
>STUB_DROME (Q05319) Serine proteinase stubble (EC 3.4.21.-) (Protein| stubble-stubbloid) [Contains: Serine proteinase stubble non-catalytic chain; Serine proteinase stubble catalytic chain] Length = 787 Score = 31.2 bits (69), Expect = 0.67 Identities = 21/61 (34%), Positives = 26/61 (42%) Frame = -2 Query: 241 RTTTTSLAVGRRTRTGVPCQSLRKLSPWVLSLPLSFTSSAPQLPTPPIRGSVERRSSVPT 62 R TTT RRT T P + ++ + S S TSS T PI S S + T Sbjct: 424 RRTTTPTTTTRRTTTNKPTRPYQRPTTATSSSSTSTTSSKTPTTTRPISSSSSSSSGIVT 483 Query: 61 S 59 S Sbjct: 484 S 484
>MOC3_ARATH (Q9ZNW0) Molybdenum cofactor synthesis protein 3 (Molybdopterin| synthase sulfurylase) (MPT synthase sulfurylase) Length = 464 Score = 31.2 bits (69), Expect = 0.67 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = -3 Query: 201 GQVSPVNHSGSYHHGCFRCLFLSPPQPLNCLR 106 GQ++ NH+G C+RCLF +PP C R Sbjct: 219 GQLTVYNHNGG---PCYRCLFPTPPPTSACQR 247
>AFF1_HUMAN (P51825) AF4/FMR2 family member 1 (AF-4 protein) (Proto-oncogene AF4)| (FEL protein) Length = 1210 Score = 30.8 bits (68), Expect = 0.87 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 12/103 (11%) Frame = -2 Query: 298 LTPISRTQPASLWGQGLRRRTTTTSLAV---GRRTRTGVPCQSLRKLSPW---------V 155 L P++ +Q G G R ++ V R+ R +P + + LSP + Sbjct: 703 LVPLTESQGPPHSGSGSRTSGCRQAVVVQEDSRKDRLPLPLRDTKLLSPLRDTPPPQSLM 762 Query: 154 LSLPLSFTSSAPQLPTPPIRGSVERRSSVPTSPAGVGEEEEGR 26 + + L S PQ PP +GS +R++ PAG E R Sbjct: 763 VKITLDLLSRIPQ---PPGKGSRQRKAEDKQPPAGKKHSSEKR 802
>YB95_ARATH (Q8W487) Protein At2g39795, mitochondrial precursor| Length = 250 Score = 29.6 bits (65), Expect = 1.9 Identities = 12/25 (48%), Positives = 15/25 (60%) Frame = -1 Query: 251 SSEKNDDDESGGGPPNEDRCPLSIT 177 S E +DDD+ GP NE PL +T Sbjct: 128 SDENDDDDDDDEGPSNESSIPLVVT 152
>MEGF9_HUMAN (Q9H1U4) Multiple epidermal growth factor-like domains 9 precursor| (EGF-like domain-containing protein 5) (Multiple EGF-like domain protein 5) Length = 600 Score = 29.3 bits (64), Expect = 2.5 Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 3/66 (4%) Frame = -2 Query: 241 RTTTTSLAVGRRTRTGVPCQSLRKLSPWVLSLPLSFTSSAPQLPTPPIRGSVERRSS--- 71 RT V R P QS W + P S T AP P+P + ER S+ Sbjct: 77 RTGPPRATVHRPLAATSPAQSPETTPLWATAGPSSTTFQAPLGPSPTTPPAAERTSTTSQ 136 Query: 70 VPTSPA 53 PT PA Sbjct: 137 APTRPA 142
>NBEA_CHICK (Q9DDD5) Protein neurobeachin (Fragment)| Length = 793 Score = 29.3 bits (64), Expect = 2.5 Identities = 19/77 (24%), Positives = 31/77 (40%) Frame = -2 Query: 247 RRRTTTTSLAVGRRTRTGVPCQSLRKLSPWVLSLPLSFTSSAPQLPTPPIRGSVERRSSV 68 +R T + GR R + SP P F + TP ++ SS+ Sbjct: 684 QRETARSGSQAGRNIRQEIN-------SPTSTETPAVFPENIKDKETPTPVEDIQLESSI 736 Query: 67 PTSPAGVGEEEEGRFLS 17 P + +G+GEE+ L+ Sbjct: 737 PHTDSGIGEEQMPNILN 753
>FOXK2_HUMAN (Q01167) Forkhead box protein K2 (Interleukin enhancer-binding| factor 1) (Cellular transcription factor ILF-1) Length = 655 Score = 28.9 bits (63), Expect = 3.3 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 2/68 (2%) Frame = -2 Query: 241 RTTTTSLAVGRRTRTGVPCQSLRKLSPWVLSLPLSFTSSAPQL--PTPPIRGSVERRSSV 68 + T T+L+ +R + ++ + P + L ++ + L P P G++ +S Sbjct: 146 KITFTALSSEKREKQEASESPVKAVQPHISPLTINIPDTMAHLISPLPSPTGTISAANSC 205 Query: 67 PTSPAGVG 44 P+SP G G Sbjct: 206 PSSPRGAG 213
>FUT5_ARATH (Q9SJP4) Probable fucosyltransferase 5 (EC 2.4.1.-) (AtFUT5)| Length = 533 Score = 28.9 bits (63), Expect = 3.3 Identities = 20/68 (29%), Positives = 28/68 (41%) Frame = -2 Query: 232 TTSLAVGRRTRTGVPCQSLRKLSPWVLSLPLSFTSSAPQLPTPPIRGSVERRSSVPTSPA 53 T ++ R+ G SL L PW+L P +FT+ P PP S T P+ Sbjct: 444 TDNIVTSARSTFGYVSYSLGGLKPWLLYQPTNFTT-----PNPPCVRSKSMEPCYLTPPS 498 Query: 52 GVGEEEEG 29 E + G Sbjct: 499 HGCEADWG 506
>NBEA_MOUSE (Q9EPN1) Protein neurobeachin (Lysosomal trafficking regulator 2)| Length = 2936 Score = 28.5 bits (62), Expect = 4.3 Identities = 13/42 (30%), Positives = 22/42 (52%) Frame = -2 Query: 145 PLSFTSSAPQLPTPPIRGSVERRSSVPTSPAGVGEEEEGRFL 20 P +F + + TP ++ SSVP + +G+GEE+ L Sbjct: 1635 PATFPDTVKEKETPTPGEDIQLESSVPHTDSGMGEEQVASIL 1676
>SAPS1_HUMAN (Q9UPN7) SAPS domain family member 1| Length = 881 Score = 28.1 bits (61), Expect = 5.7 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Frame = -2 Query: 145 PLSFTSSAPQLPTPPIRGSVER-RSSVPTSPAGVGEEE 35 PLS+ S PQ P P + + + PTSP GEEE Sbjct: 697 PLSYPSPGPQPPGPSWTATFDPVPTDAPTSPRVSGEEE 734
>CCD95_BOVIN (Q29RS4) Coiled-coil domain-containing protein 95| Length = 244 Score = 28.1 bits (61), Expect = 5.7 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 7/52 (13%) Frame = -2 Query: 199 TGVPCQSLRKLSPWVLSL------PLSFTSSAPQLPTP-PIRGSVERRSSVP 65 TG P Q+ R SP++ SL P A QLP P P+R E+R +P Sbjct: 116 TGFPLQASRAPSPYLSSLASPTYPPFPSDYLALQLPEPSPLRPKREKRPRLP 167
>V70K_TYMV (P10357) 69 kDa protein| Length = 628 Score = 27.7 bits (60), Expect = 7.4 Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 1/74 (1%) Frame = -2 Query: 226 SLAVGRRTRTGVPCQSLRKLSPWVL-SLPLSFTSSAPQLPTPPIRGSVERRSSVPTSPAG 50 SL G + G P R SP LPL P PTPP + S + SP Sbjct: 424 SLPKGALPKEGAPPPPRRLPSPAPRPQLPLRDLGRTPGFPTPPKTPTRTPESRITASPTD 483 Query: 49 VGEEEEGRFLSLST 8 + + LS+ T Sbjct: 484 IAPLDSDPVLSVRT 497
>TIMD2_RAT (Q5FVR0) T-cell immunoglobulin and mucin domain-containing protein| 2 precursor (TIMD-2) (T-cell membrane protein 2) (TIM-2) Length = 349 Score = 27.7 bits (60), Expect = 7.4 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 3/88 (3%) Frame = -2 Query: 310 SDPPLTPISRTQPASLWGQGLRRRTTTTSLAVGRRTRTGVPCQSLRKLS---PWVLSLPL 140 + PP P + +P + R TTT GR T T P + R + P P Sbjct: 130 TSPPTRPTNTGRPTTTRPTNTGRPTTTRPTNTGRPTTTERPTTTGRPTTTERPTTTGRPT 189 Query: 139 SFTSSAPQLPTPPIRGSVERRSSVPTSP 56 + ++ + +PT S +S P +P Sbjct: 190 TISTRSTHVPT-----STRVSTSTPPTP 212
>WASP_HUMAN (P42768) Wiskott-Aldrich syndrome protein (WASp)| Length = 501 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = -2 Query: 118 QLPTPPIRGSVERRSSVPTSPAGVGEEEEG 29 QLP PP + ERR +P P G ++ G Sbjct: 157 QLPPPPTPANEERRGGLPPLPLHPGGDQGG 186
>V70K_TYMVC (P28478) 69 kDa protein| Length = 628 Score = 27.3 bits (59), Expect = 9.7 Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 1/74 (1%) Frame = -2 Query: 226 SLAVGRRTRTGVPCQSLRKLSPWVL-SLPLSFTSSAPQLPTPPIRGSVERRSSVPTSPAG 50 SL G + G P R SP LPL P PTPP + S + SP Sbjct: 424 SLPKGALPKEGAPPPPRRLPSPAPHPQLPLRDLGRTPGFPTPPKTPTRTPESRITASPTD 483 Query: 49 VGEEEEGRFLSLST 8 + + LS+ T Sbjct: 484 IAPLDSDPVLSVRT 497
>APP1_SCHPO (Q9P7E8) Protein app1| Length = 857 Score = 27.3 bits (59), Expect = 9.7 Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 4/94 (4%) Frame = -2 Query: 322 ACSLSDPPLTPISRTQPASLWGQGLRRRTTTTSLAVGRRTRTGVPCQSLRKLSPWVLSLP 143 A S+ PP+ P++ P+ +A VP + ++P V S+P Sbjct: 571 ALSVPQPPVAPVAPEVPS----------VPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVP 620 Query: 142 ----LSFTSSAPQLPTPPIRGSVERRSSVPTSPA 53 + AP +P PP V SVP PA Sbjct: 621 QRPAVPVVPEAPSVPQPPAAPVVPEVPSVPQRPA 654
>YBV8_YEAST (P38266) Protein YBR108W| Length = 947 Score = 27.3 bits (59), Expect = 9.7 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%) Frame = -2 Query: 193 VPCQSLRKLSPWVLSLPLSFTSSAPQLPTPPIRGSVERRSSV-PTSPAGVGEEEEGRFL 20 VP + K +P ++P+ + + P PP RG+ ER SV T+ A V E+ FL Sbjct: 531 VPSEHTTKNAP-ERAVPILPPRNNVEPPPPPSRGNFERTESVLSTNAANVQEDPISNFL 588
>NFAT5_HUMAN (O94916) Nuclear factor of activated T-cells 5 (T-cell| transcription factor NFAT5) (NF-AT5) (Tonicity-responsive enhancer-binding protein) (TonE-binding protein) (TonEBP) Length = 1531 Score = 27.3 bits (59), Expect = 9.7 Identities = 18/66 (27%), Positives = 26/66 (39%) Frame = -1 Query: 299 IDSDFQNPTCLSVGTRSSEKNDDDESGGGPPNEDRCPLSITPEAITMGAFVASFFHLLSP 120 + + Q P S + E+G PP S P + +MG +SF SP Sbjct: 31 LPKELQLPPSRETSVASMSQTSGGEAGSPPPAVVAADASSAPSSSSMGGACSSFTTSSSP 90 Query: 119 STAYAT 102 T Y+T Sbjct: 91 -TIYST 95
>PHSH_SOLTU (P32811) Alpha-glucan phosphorylase, H isozyme (EC 2.4.1.1) (Starch| phosphorylase H) Length = 838 Score = 27.3 bits (59), Expect = 9.7 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 5/57 (8%) Frame = -2 Query: 262 WGQGLRRRTTTTSLAVGRRTRTGVPCQSLRKLSPWVL-----SLPLSFTSSAPQLPT 107 WG GLR R + + + VP L K SPW + P+ F LP+ Sbjct: 155 WGYGLRYRYGLFKQLITKAGQEEVPEDWLEKFSPWEIVRHDVVFPIRFFGHVEVLPS 211
>AT10D_MOUSE (Q8K2X1) Probable phospholipid-transporting ATPase VD (EC 3.6.3.1)| (ATPVD) Length = 1416 Score = 27.3 bits (59), Expect = 9.7 Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 3/81 (3%) Frame = -2 Query: 244 RRTTTTSLAVGRRTRTGVPCQSLRKLSPWVLSLPLSFTSSAPQLPTPPIRGSVERRSSVP 65 RR+++ SLA G+ + +G PC + ++S + S P+L +PP+ + +P Sbjct: 634 RRSSSPSLASGKDSSSGTPCAFVSRISFF----------SRPKL-SPPMEDESSQMDEIP 682 Query: 64 ---TSPAGVGEEEEGRFLSLS 11 S E + R + LS Sbjct: 683 QASNSACCTETEAQNRAVGLS 703
>PHSH_ARATH (Q9SD76) Alpha-glucan phosphorylase, H isozyme (EC 2.4.1.1) (Starch| phosphorylase H) Length = 841 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/35 (34%), Positives = 17/35 (48%) Frame = -2 Query: 262 WGQGLRRRTTTTSLAVGRRTRTGVPCQSLRKLSPW 158 WG GLR R + ++ + +P L K SPW Sbjct: 158 WGYGLRYRHGLFKQIITKKGQEEIPEDWLEKFSPW 192 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 46,058,806 Number of Sequences: 219361 Number of extensions: 834859 Number of successful extensions: 3359 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 3177 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3348 length of database: 80,573,946 effective HSP length: 88 effective length of database: 61,270,178 effective search space used: 1470484272 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
