ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl12g11 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_192546.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3243 Score = 305 bits (154), Expect = 5e-80 Identities = 217/238 (91%) Strand = Plus / Plus Query: 106 aggctggcggtggaggtggtggacgcgcgggacctggtgcccaaggacgggctcggcacg 165 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 76 aggctggcggtggaggtggtggacgcgcgggacctggtgcccaaggacgggctcggcacg 135 Query: 166 tccagcgcctacgcggtggccgacttcgacggccagcgcaagcgcacccggaccgtgccg 225 || || |||| ||| || | ||||||||||| ||||| ||||| || || ||||||||| Sbjct: 136 tcgagtgccttcgccgtcgtggacttcgacgggcagcggaagcggacgcgcaccgtgccg 195 Query: 226 cgggacctcaacccgcagtggcacgagcgcctcgagttcgccgtccccgacccggccacc 285 || ||||||| |||||||||||||||||| |||||||||||||| | |||||||||| || Sbjct: 196 cgcgacctcagcccgcagtggcacgagcggctcgagttcgccgtgcacgacccggccgcc 255 Query: 286 atgcacgccgaatcgctcgacgtctcgctctaccacgaccgccgcttcaacccctccg 343 ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 256 atgcacgccgaggcgctcgacgtctcgctctaccacgaccgccgcttcaacccttccg 313
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 305 bits (154), Expect = 5e-80 Identities = 217/238 (91%) Strand = Plus / Minus Query: 106 aggctggcggtggaggtggtggacgcgcgggacctggtgcccaaggacgggctcggcacg 165 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 22867824 aggctggcggtggaggtggtggacgcgcgggacctggtgcccaaggacgggctcggcacg 22867765 Query: 166 tccagcgcctacgcggtggccgacttcgacggccagcgcaagcgcacccggaccgtgccg 225 || || |||| ||| || | ||||||||||| ||||| ||||| || || ||||||||| Sbjct: 22867764 tcgagtgccttcgccgtcgtggacttcgacgggcagcggaagcggacgcgcaccgtgccg 22867705 Query: 226 cgggacctcaacccgcagtggcacgagcgcctcgagttcgccgtccccgacccggccacc 285 || ||||||| |||||||||||||||||| |||||||||||||| | |||||||||| || Sbjct: 22867704 cgcgacctcagcccgcagtggcacgagcggctcgagttcgccgtgcacgacccggccgcc 22867645 Query: 286 atgcacgccgaatcgctcgacgtctcgctctaccacgaccgccgcttcaacccctccg 343 ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 22867644 atgcacgccgaggcgctcgacgtctcgctctaccacgaccgccgcttcaacccttccg 22867587
>dbj|AP003300.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0700A11 Length = 136321 Score = 305 bits (154), Expect = 5e-80 Identities = 217/238 (91%) Strand = Plus / Minus Query: 106 aggctggcggtggaggtggtggacgcgcgggacctggtgcccaaggacgggctcggcacg 165 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 71381 aggctggcggtggaggtggtggacgcgcgggacctggtgcccaaggacgggctcggcacg 71322 Query: 166 tccagcgcctacgcggtggccgacttcgacggccagcgcaagcgcacccggaccgtgccg 225 || || |||| ||| || | ||||||||||| ||||| ||||| || || ||||||||| Sbjct: 71321 tcgagtgccttcgccgtcgtggacttcgacgggcagcggaagcggacgcgcaccgtgccg 71262 Query: 226 cgggacctcaacccgcagtggcacgagcgcctcgagttcgccgtccccgacccggccacc 285 || ||||||| |||||||||||||||||| |||||||||||||| | |||||||||| || Sbjct: 71261 cgcgacctcagcccgcagtggcacgagcggctcgagttcgccgtgcacgacccggccgcc 71202 Query: 286 atgcacgccgaatcgctcgacgtctcgctctaccacgaccgccgcttcaacccctccg 343 ||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 71201 atgcacgccgaggcgctcgacgtctcgctctaccacgaccgccgcttcaacccttccg 71144
>dbj|AK110820.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-171-G11, full insert sequence Length = 1464 Score = 91.7 bits (46), Expect = 1e-15 Identities = 145/178 (81%) Strand = Plus / Plus Query: 128 acgcgcgggacctggtgcccaaggacgggctcggcacgtccagcgcctacgcggtggccg 187 |||||||| |||| ||||||||||||||| || ||| | ||||||||||| || | || Sbjct: 245 acgcgcggaacctcatgcccaaggacgggcaggggacggcgagcgcctacgccgtcgtcg 304 Query: 188 acttcgacggccagcgcaagcgcacccggaccgtgccgcgggacctcaacccgcagtggc 247 ||||||||||||||||| ||||| ||| ||||||||| ||||||||||||||| Sbjct: 305 acttcgacggccagcgccgccgcacggccaccaggccgcgggatctcaacccgcagtggg 364 Query: 248 acgagcgcctcgagttcgccgtccccgacccggccaccatgcacgccgaatcgctcga 305 ||||||||||||||| ||||| |||||| | | |||||| |||||| ||||||| Sbjct: 365 gggagcgcctcgagttcctcgtccacgaccccgacgccatgcgcgccgagacgctcga 422
>ref|XM_469033.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3363 Score = 85.7 bits (43), Expect = 9e-14 Identities = 124/151 (82%) Strand = Plus / Plus Query: 128 acgcgcgggacctggtgcccaaggacgggctcggcacgtccagcgcctacgcggtggccg 187 |||||||| |||| ||||||||||||||| || ||| | ||||||||||| || | || Sbjct: 245 acgcgcggaacctcatgcccaaggacgggcaggggacggcgagcgcctacgccgtcgtcg 304 Query: 188 acttcgacggccagcgcaagcgcacccggaccgtgccgcgggacctcaacccgcagtggc 247 ||||||||||||||||| ||||| ||| ||||||||| ||||||||||||||| Sbjct: 305 acttcgacggccagcgccgccgcacggccaccaggccgcgggatctcaacccgcagtggg 364 Query: 248 acgagcgcctcgagttcgccgtccccgaccc 278 ||||||||||||||| ||||| |||||| Sbjct: 365 gggagcgcctcgagttcctcgtccacgaccc 395
>gb|AC145381.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0024K17 map near S16403, complete sequence Length = 172238 Score = 85.7 bits (43), Expect = 9e-14 Identities = 124/151 (82%) Strand = Plus / Minus Query: 128 acgcgcgggacctggtgcccaaggacgggctcggcacgtccagcgcctacgcggtggccg 187 |||||||| |||| ||||||||||||||| || ||| | ||||||||||| || | || Sbjct: 159860 acgcgcggaacctcatgcccaaggacgggcaggggacggcgagcgcctacgccgtcgtcg 159801 Query: 188 acttcgacggccagcgcaagcgcacccggaccgtgccgcgggacctcaacccgcagtggc 247 ||||||||||||||||| ||||| ||| ||||||||| ||||||||||||||| Sbjct: 159800 acttcgacggccagcgccgccgcacggccaccaggccgcgggatctcaacccgcagtggg 159741 Query: 248 acgagcgcctcgagttcgccgtccccgaccc 278 ||||||||||||||| ||||| |||||| Sbjct: 159740 gggagcgcctcgagttcctcgtccacgaccc 159710
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 85.7 bits (43), Expect = 9e-14 Identities = 124/151 (82%) Strand = Plus / Minus Query: 128 acgcgcgggacctggtgcccaaggacgggctcggcacgtccagcgcctacgcggtggccg 187 |||||||| |||| ||||||||||||||| || ||| | ||||||||||| || | || Sbjct: 25043423 acgcgcggaacctcatgcccaaggacgggcaggggacggcgagcgcctacgccgtcgtcg 25043364 Query: 188 acttcgacggccagcgcaagcgcacccggaccgtgccgcgggacctcaacccgcagtggc 247 ||||||||||||||||| ||||| ||| ||||||||| ||||||||||||||| Sbjct: 25043363 acttcgacggccagcgccgccgcacggccaccaggccgcgggatctcaacccgcagtggg 25043304 Query: 248 acgagcgcctcgagttcgccgtccccgaccc 278 ||||||||||||||| ||||| |||||| Sbjct: 25043303 gggagcgcctcgagttcctcgtccacgaccc 25043273
>gb|AC138001.2| Oryza sativa chromosome 3 BAC OSJNBa0093M23 genomic sequence, complete sequence Length = 170020 Score = 85.7 bits (43), Expect = 9e-14 Identities = 124/151 (82%) Strand = Plus / Minus Query: 128 acgcgcgggacctggtgcccaaggacgggctcggcacgtccagcgcctacgcggtggccg 187 |||||||| |||| ||||||||||||||| || ||| | ||||||||||| || | || Sbjct: 75230 acgcgcggaacctcatgcccaaggacgggcaggggacggcgagcgcctacgccgtcgtcg 75171 Query: 188 acttcgacggccagcgcaagcgcacccggaccgtgccgcgggacctcaacccgcagtggc 247 ||||||||||||||||| ||||| ||| ||||||||| ||||||||||||||| Sbjct: 75170 acttcgacggccagcgccgccgcacggccaccaggccgcgggatctcaacccgcagtggg 75111 Query: 248 acgagcgcctcgagttcgccgtccccgaccc 278 ||||||||||||||| ||||| |||||| Sbjct: 75110 gggagcgcctcgagttcctcgtccacgaccc 75080
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 85.7 bits (43), Expect = 9e-14 Identities = 124/151 (82%) Strand = Plus / Minus Query: 128 acgcgcgggacctggtgcccaaggacgggctcggcacgtccagcgcctacgcggtggccg 187 |||||||| |||| ||||||||||||||| || ||| | ||||||||||| || | || Sbjct: 25134732 acgcgcggaacctcatgcccaaggacgggcaggggacggcgagcgcctacgccgtcgtcg 25134673 Query: 188 acttcgacggccagcgcaagcgcacccggaccgtgccgcgggacctcaacccgcagtggc 247 ||||||||||||||||| ||||| ||| ||||||||| ||||||||||||||| Sbjct: 25134672 acttcgacggccagcgccgccgcacggccaccaggccgcgggatctcaacccgcagtggg 25134613 Query: 248 acgagcgcctcgagttcgccgtccccgaccc 278 ||||||||||||||| ||||| |||||| Sbjct: 25134612 gggagcgcctcgagttcctcgtccacgaccc 25134582
>dbj|AK107712.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-132-D11, full insert sequence Length = 816 Score = 85.7 bits (43), Expect = 9e-14 Identities = 124/151 (82%) Strand = Plus / Plus Query: 128 acgcgcgggacctggtgcccaaggacgggctcggcacgtccagcgcctacgcggtggccg 187 |||||||| |||| ||||||||||||||| || ||| | ||||||||||| || | || Sbjct: 245 acgcgcggaacctcatgcccaaggacgggcaggggacggcgagcgcctacgccgtcgtcg 304 Query: 188 acttcgacggccagcgcaagcgcacccggaccgtgccgcgggacctcaacccgcagtggc 247 ||||||||||||||||| ||||| ||| ||||||||| ||||||||||||||| Sbjct: 305 acttcgacggccagcgccgccgcacggccaccaggccgcgggatctcaacccgcagtggg 364 Query: 248 acgagcgcctcgagttcgccgtccccgaccc 278 ||||||||||||||| ||||| |||||| Sbjct: 365 gggagcgcctcgagttcctcgtccacgaccc 395
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 65.9 bits (33), Expect = 8e-08 Identities = 81/97 (83%) Strand = Plus / Minus Query: 108 gctggcggtggaggtggtggacgcgcgggacctggtgcccaaggacgggctcggcacgtc 167 ||||| ||||||||||||||| |||||| ||||| ||||||||||||| |||||||| Sbjct: 3521402 gctggtggtggaggtggtggaggcgcggaacctgctgcccaaggacggcacgggcacgtc 3521343 Query: 168 cagcgcctacgcggtggccgacttcgacggccagcgc 204 ||| | ||||| | ||||||||||||||||||| Sbjct: 3521342 gagcccgtacgcccgcgtcgacttcgacggccagcgc 3521306 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 65 cgggcggggggcagccgccgccgc 88 ||||||||||||||||||| |||| Sbjct: 2985962 cgggcggggggcagccgccaccgc 2985939
>dbj|AP004267.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0039H02 Length = 169162 Score = 65.9 bits (33), Expect = 8e-08 Identities = 81/97 (83%) Strand = Plus / Minus Query: 108 gctggcggtggaggtggtggacgcgcgggacctggtgcccaaggacgggctcggcacgtc 167 ||||| ||||||||||||||| |||||| ||||| ||||||||||||| |||||||| Sbjct: 59352 gctggtggtggaggtggtggaggcgcggaacctgctgcccaaggacggcacgggcacgtc 59293 Query: 168 cagcgcctacgcggtggccgacttcgacggccagcgc 204 ||| | ||||| | ||||||||||||||||||| Sbjct: 59292 gagcccgtacgcccgcgtcgacttcgacggccagcgc 59256
>dbj|AP006364.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT28B04, TM0170, complete sequence Length = 101172 Score = 56.0 bits (28), Expect = 8e-05 Identities = 34/36 (94%) Strand = Plus / Minus Query: 106 aggctggcggtggaggtggtggacgcgcgggacctg 141 ||||||| |||||||||||||||||||||| ||||| Sbjct: 71096 aggctggtggtggaggtggtggacgcgcggaacctg 71061
>gb|AY211267.1| Chlamydomonas reinhardtii zeaxanthin epoxidase precursor (ZEP1) gene, complete cds; nuclear gene for chloroplast product Length = 6369 Score = 50.1 bits (25), Expect = 0.005 Identities = 28/29 (96%) Strand = Plus / Minus Query: 100 gtgcgcaggctggcggtggaggtggtgga 128 |||||||||||||||||||||||| |||| Sbjct: 1100 gtgcgcaggctggcggtggaggtgttgga 1072
>gb|AC135423.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0015C02, complete sequence Length = 147407 Score = 48.1 bits (24), Expect = 0.019 Identities = 24/24 (100%) Strand = Plus / Minus Query: 65 cgggcggggggcagccgccgccgc 88 |||||||||||||||||||||||| Sbjct: 82642 cgggcggggggcagccgccgccgc 82619
>gb|AC121364.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0052E20, complete sequence Length = 162434 Score = 48.1 bits (24), Expect = 0.019 Identities = 24/24 (100%) Strand = Plus / Minus Query: 65 cgggcggggggcagccgccgccgc 88 |||||||||||||||||||||||| Sbjct: 124175 cgggcggggggcagccgccgccgc 124152
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 48.1 bits (24), Expect = 0.019 Identities = 24/24 (100%) Strand = Plus / Minus Query: 65 cgggcggggggcagccgccgccgc 88 |||||||||||||||||||||||| Sbjct: 12756329 cgggcggggggcagccgccgccgc 12756306 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 263 tcgccgtccccgacccggccacca 286 |||||||||| ||||||||||||| Sbjct: 13587876 tcgccgtccctgacccggccacca 13587853 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 65 cgggcggggggcagccgccgccgc 88 |||||||||||||| ||||||||| Sbjct: 12756359 cgggcggggggcagtcgccgccgc 12756336
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 48.1 bits (24), Expect = 0.019 Identities = 24/24 (100%) Strand = Plus / Minus Query: 65 cgggcggggggcagccgccgccgc 88 |||||||||||||||||||||||| Sbjct: 23020162 cgggcggggggcagccgccgccgc 23020139
>dbj|AP005477.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0039F24 Length = 132107 Score = 48.1 bits (24), Expect = 0.019 Identities = 24/24 (100%) Strand = Plus / Minus Query: 65 cgggcggggggcagccgccgccgc 88 |||||||||||||||||||||||| Sbjct: 109850 cgggcggggggcagccgccgccgc 109827 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 65 cgggcggggggcagccgccgccgc 88 |||||||||||||| ||||||||| Sbjct: 109880 cgggcggggggcagtcgccgccgc 109857
>dbj|AP004811.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0019A05 Length = 144255 Score = 48.1 bits (24), Expect = 0.019 Identities = 24/24 (100%) Strand = Plus / Minus Query: 65 cgggcggggggcagccgccgccgc 88 |||||||||||||||||||||||| Sbjct: 57106 cgggcggggggcagccgccgccgc 57083 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 65 cgggcggggggcagccgccgccgc 88 |||||||||||||| ||||||||| Sbjct: 57136 cgggcggggggcagtcgccgccgc 57113
>ref|XM_865084.1| PREDICTED: Bos taurus similar to spinster-like (LOC613889), mRNA Length = 2571 Score = 46.1 bits (23), Expect = 0.077 Identities = 23/23 (100%) Strand = Plus / Plus Query: 64 gcgggcggggggcagccgccgcc 86 ||||||||||||||||||||||| Sbjct: 320 gcgggcggggggcagccgccgcc 342
>gb|AC126391.9| Homo sapiens chromosome 17, clone RP11-106A7, complete sequence Length = 56981 Score = 46.1 bits (23), Expect = 0.077 Identities = 23/23 (100%) Strand = Plus / Plus Query: 64 gcgggcggggggcagccgccgcc 86 ||||||||||||||||||||||| Sbjct: 47679 gcgggcggggggcagccgccgcc 47701
>gb|BC041772.1| Homo sapiens hypothetical protein LOC124976, mRNA (cDNA clone MGC:27061 IMAGE:4814561), complete cds Length = 3457 Score = 46.1 bits (23), Expect = 0.077 Identities = 23/23 (100%) Strand = Plus / Plus Query: 64 gcgggcggggggcagccgccgcc 86 ||||||||||||||||||||||| Sbjct: 506 gcgggcggggggcagccgccgcc 528
>emb|AL731624.3|OSJN00266 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0091C07, complete sequence Length = 138383 Score = 46.1 bits (23), Expect = 0.077 Identities = 23/23 (100%) Strand = Plus / Plus Query: 66 gggcggggggcagccgccgccgc 88 ||||||||||||||||||||||| Sbjct: 135820 gggcggggggcagccgccgccgc 135842
>gb|AC118754.6| Homo sapiens, clone RP11-141J13, complete sequence Length = 185378 Score = 46.1 bits (23), Expect = 0.077 Identities = 23/23 (100%) Strand = Plus / Minus Query: 64 gcgggcggggggcagccgccgcc 86 ||||||||||||||||||||||| Sbjct: 161799 gcgggcggggggcagccgccgcc 161777
>tpg|BK000853.1| TPA: TPA_inf: Oryza sativa transposon Rim2-M247, complete sequence Length = 2443 Score = 46.1 bits (23), Expect = 0.077 Identities = 23/23 (100%) Strand = Plus / Plus Query: 66 gggcggggggcagccgccgccgc 88 ||||||||||||||||||||||| Sbjct: 1310 gggcggggggcagccgccgccgc 1332
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 46.1 bits (23), Expect = 0.077 Identities = 23/23 (100%) Strand = Plus / Plus Query: 66 gggcggggggcagccgccgccgc 88 ||||||||||||||||||||||| Sbjct: 16885389 gggcggggggcagccgccgccgc 16885411
>emb|AJ515536.1|AHI515536 Antirrhinum hispanicum slf-S5 gene for S locus F-box (SLF)-S5 protein and slf-S5A gene for S locus F-box (SLF)-S5A protein Length = 71543 Score = 46.1 bits (23), Expect = 0.077 Identities = 23/23 (100%) Strand = Plus / Minus Query: 107 ggctggcggtggaggtggtggac 129 ||||||||||||||||||||||| Sbjct: 62762 ggctggcggtggaggtggtggac 62740
>emb|AL662991.3|OSJN00191 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0002N06, complete sequence Length = 100589 Score = 46.1 bits (23), Expect = 0.077 Identities = 23/23 (100%) Strand = Plus / Plus Query: 66 gggcggggggcagccgccgccgc 88 ||||||||||||||||||||||| Sbjct: 9214 gggcggggggcagccgccgccgc 9236
>gb|AC005409.1| Homo sapiens chromosome 12 clone 14951, complete sequence Length = 177364 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 327 ccgcttcaacccctccgccggg 348 |||||||||||||||||||||| Sbjct: 134050 ccgcttcaacccctccgccggg 134029
>gb|AC063950.37| Homo sapiens 12 BAC RP11-511H9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 174231 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 327 ccgcttcaacccctccgccggg 348 |||||||||||||||||||||| Sbjct: 127722 ccgcttcaacccctccgccggg 127701
>gb|AF546141.1| Streptomyces ghanaensis UnbL (unbL), UnbV (unbV), UnbU (unbU), PksE (pksE), and TebC (tebC) genes, complete cds Length = 10371 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 177 cgcggtggccgacttcgacggc 198 |||||||||||||||||||||| Sbjct: 1601 cgcggtggccgacttcgacggc 1622
>gb|AY108471.1| Zea mays PCO143674 mRNA sequence Length = 1715 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Plus Query: 67 ggcggggggcagccgccgccgc 88 |||||||||||||||||||||| Sbjct: 131 ggcggggggcagccgccgccgc 152
>gb|L06161.1|PSEAAC3C Pseudomonas aeruginosa aminoglycoside 3'-N-acetyltransferase (aac(3)-IIIc) gene, complete cds Length = 1234 Score = 44.1 bits (22), Expect = 0.30 Identities = 22/22 (100%) Strand = Plus / Minus Query: 92 cgcagatggtgcgcaggctggc 113 |||||||||||||||||||||| Sbjct: 1052 cgcagatggtgcgcaggctggc 1031
>ref|XM_869042.1| PREDICTED: Bos taurus similar to DNA-repair protein XRCC1 (LOC616905), mRNA Length = 2013 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 73 gggcagccgccgccgcatgcg 93 ||||||||||||||||||||| Sbjct: 1223 gggcagccgccgccgcatgcg 1203
>gb|AC068473.19| Homo sapiens chromosome 18, clone RP11-567M16, complete sequence Length = 175721 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 57 ctccatggcgggcggggggca 77 ||||||||||||||||||||| Sbjct: 142648 ctccatggcgggcggggggca 142628
>gb|AC079059.10| Homo sapiens chromosome 18, clone RP11-281L12, complete sequence Length = 145993 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 ctccatggcgggcggggggca 77 ||||||||||||||||||||| Sbjct: 140011 ctccatggcgggcggggggca 140031
>emb|BX640438.1| Bordetella bronchiseptica strain RB50, complete genome; segment 2/16 Length = 347786 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 182 tggccgacttcgacggccagc 202 ||||||||||||||||||||| Sbjct: 290243 tggccgacttcgacggccagc 290223
>emb|BX640424.1| Bordetella parapertussis strain 12822, complete genome; segment 2/14 Length = 349146 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 182 tggccgacttcgacggccagc 202 ||||||||||||||||||||| Sbjct: 288333 tggccgacttcgacggccagc 288313
>gb|AC021594.9| Homo sapiens, clone RP11-154H12, complete sequence Length = 162336 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 57 ctccatggcgggcggggggca 77 ||||||||||||||||||||| Sbjct: 147977 ctccatggcgggcggggggca 147997
>gb|AC105118.23| Homo sapiens chromosome 8, clone RP11-909N17, complete sequence Length = 179941 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 60 catggcgggcggggggcagcc 80 ||||||||||||||||||||| Sbjct: 77640 catggcgggcggggggcagcc 77660
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 72 ggggcagccgccgccgcatgcgcag 96 |||||||||||||||||| |||||| Sbjct: 1750846 ggggcagccgccgccgcaggcgcag 1750870
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 178 gcggtggccgacttcgacggc 198 ||||||||||||||||||||| Sbjct: 2409071 gcggtggccgacttcgacggc 2409091
>ref|XM_507106.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1499_A07.20 patrial mRNA Length = 4804 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 cggtggaggtggtggacgcg 132 |||||||||||||||||||| Sbjct: 1008 cggtggaggtggtggacgcg 1027
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 gcaggctggcggtggaggtg 123 |||||||||||||||||||| Sbjct: 4772144 gcaggctggcggtggaggtg 4772125
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 gcagccgccgccgcatgcgc 94 |||||||||||||||||||| Sbjct: 2843240 gcagccgccgccgcatgcgc 2843259
>gb|AY658463.1| Synthetic construct Peudomonas aeruginosa clone FLH046627.01F PA0949 gene, partial cds Length = 597 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 gcaggctggcggtggaggtg 123 |||||||||||||||||||| Sbjct: 355 gcaggctggcggtggaggtg 336
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 gcagccgccgccgcatgcgc 94 |||||||||||||||||||| Sbjct: 4070725 gcagccgccgccgcatgcgc 4070744
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 gcaggctggcggtggaggtg 123 |||||||||||||||||||| Sbjct: 1856067 gcaggctggcggtggaggtg 1856086
>ref|XM_986782.1| PREDICTED: Mus musculus hypothetical protein LOC671403 (LOC671403), mRNA Length = 1257 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 63 ggcgggcggggggcagccgccgcc 86 ||||||||||| |||||||||||| Sbjct: 501 ggcgggcggggcgcagccgccgcc 478
>ref|XM_900516.2| PREDICTED: Mus musculus hypothetical LOC628262 (LOC628262), mRNA Length = 1083 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 63 ggcgggcggggggcagccgccgcc 86 ||||||||||| |||||||||||| Sbjct: 327 ggcgggcggggcgcagccgccgcc 304
>ref|XM_969474.1| PREDICTED: Tribolium castaneum similar to CG3983-PB, isoform B (LOC663428), mRNA Length = 1716 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 116 tggaggtggtggacgcgcgggacc 139 ||||||||||||||||||| |||| Sbjct: 464 tggaggtggtggacgcgcgcgacc 487
>emb|BX640450.1| Bordetella bronchiseptica strain RB50, complete genome; segment 14/16 Length = 346287 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 ggctggcggtggaggtggtg 126 |||||||||||||||||||| Sbjct: 161684 ggctggcggtggaggtggtg 161665
>emb|BX640435.1| Bordetella parapertussis strain 12822, complete genome; segment 13/14 Length = 346259 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 ggctggcggtggaggtggtg 126 |||||||||||||||||||| Sbjct: 80889 ggctggcggtggaggtggtg 80870
>emb|BX640411.1| Bordetella pertussis strain Tohama I, complete genome; segment 1/12 Length = 346359 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 ggctggcggtggaggtggtg 126 |||||||||||||||||||| Sbjct: 327432 ggctggcggtggaggtggtg 327451
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 gcagccgccgccgcatgcgc 94 |||||||||||||||||||| Sbjct: 3777305 gcagccgccgccgcatgcgc 3777324
>emb|AJ001641.1|RNBRAIN1 Rattus norvegicus mRNA for Brain-1 (Brn-1) protein Length = 3050 Score = 40.1 bits (20), Expect = 4.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 58 tccatggcgggcggggggcagccgccgccgca 89 |||||||||||||| ||||||||||||||| Sbjct: 685 tccatggcgggcggccagcagccgccgccgca 716
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 gctggcggtggaggtggtgg 127 |||||||||||||||||||| Sbjct: 20908129 gctggcggtggaggtggtgg 20908110
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 cggtggaggtggtggacgcg 132 |||||||||||||||||||| Sbjct: 1463084 cggtggaggtggtggacgcg 1463103
>ref|NM_138837.1| Rattus norvegicus POU domain, class 3, transcription factor 3 (Pou3f3), mRNA Length = 3050 Score = 40.1 bits (20), Expect = 4.7 Identities = 29/32 (90%) Strand = Plus / Plus Query: 58 tccatggcgggcggggggcagccgccgccgca 89 |||||||||||||| ||||||||||||||| Sbjct: 685 tccatggcgggcggccagcagccgccgccgca 716
>gb|AE004529.1| Pseudomonas aeruginosa PAO1, section 90 of 529 of the complete genome Length = 11702 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 gcaggctggcggtggaggtg 123 |||||||||||||||||||| Sbjct: 2921 gcaggctggcggtggaggtg 2940
>ref|XM_236747.3| PREDICTED: Rattus norvegicus similar to CUB domain containing protein 1 (predicted) (LOC301082), mRNA Length = 2502 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 139 ctggtgcccaaggacgggctcggc 162 ||||||||||||||| |||||||| Sbjct: 1351 ctggtgcccaaggacaggctcggc 1374
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 4.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 148 aaggacgggctcggcacgtccagcgcct 175 |||| |||||||||||| |||||||||| Sbjct: 808823 aaggtcgggctcggcacttccagcgcct 808850
>dbj|AP003572.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0459H02 Length = 168230 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 263 tcgccgtccccgacccggccacca 286 |||||||||| ||||||||||||| Sbjct: 116366 tcgccgtccctgacccggccacca 116343
>dbj|AP006149.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1274F11 Length = 171257 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 gctggcggtggaggtggtgg 127 |||||||||||||||||||| Sbjct: 218 gctggcggtggaggtggtgg 199
>dbj|AP006174.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0229B10 Length = 114509 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 108 gctggcggtggaggtggtgg 127 |||||||||||||||||||| Sbjct: 100355 gctggcggtggaggtggtgg 100336
>dbj|AP005409.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0024L18 Length = 150128 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 65 cgggcggggggcagccgccgccgc 88 ||||||||||||||||||| |||| Sbjct: 32017 cgggcggggggcagccgccaccgc 31994
>dbj|AP004166.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1499_A07 Length = 132146 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 cggtggaggtggtggacgcg 132 |||||||||||||||||||| Sbjct: 72989 cggtggaggtggtggacgcg 73008
>dbj|AB108850.1| Chlamydomonas reinhardtii mmp3 mRNA for matrix metalloprotease, complete cds Length = 3410 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 73 gggcagccgccgccgcatgc 92 |||||||||||||||||||| Sbjct: 630 gggcagccgccgccgcatgc 649
>dbj|AK106646.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-113-E11, full insert sequence Length = 2055 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 263 tcgccgtccccgacccggccacca 286 |||||||||| ||||||||||||| Sbjct: 1695 tcgccgtccctgacccggccacca 1672
>dbj|AK102481.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033094L01, full insert sequence Length = 1918 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 263 tcgccgtccccgacccggccacca 286 |||||||||| ||||||||||||| Sbjct: 168 tcgccgtccctgacccggccacca 191
>gb|AF042096.3|AF042096 Bradyrhizobium japonicum UbiE (ubiE) gene, partial cds; AarF (aarF), panthotenate metabolism flavoprotein (dfp), deoxyuridine-triphosphatase (dut), putative sensor protein (bdfA), GalF-like (galF), hypothetical protein genes, complete cds; putative helicase 2 gene, partial cds; and unknown genes Length = 13289 Score = 40.1 bits (20), Expect = 4.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 148 aaggacgggctcggcacgtccagcgcct 175 |||| |||||||||||| |||||||||| Sbjct: 7218 aaggtcgggctcggcacttccagcgcct 7191
>dbj|AK071597.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023104P21, full insert sequence Length = 4804 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 113 cggtggaggtggtggacgcg 132 |||||||||||||||||||| Sbjct: 1008 cggtggaggtggtggacgcg 1027
>gb|AC121091.10| Mus musculus chromosome 1, clone RP24-191N24, complete sequence Length = 150109 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 63 ggcgggcggggggcagccgccgcc 86 ||||||||||| |||||||||||| Sbjct: 73849 ggcgggcggggcgcagccgccgcc 73872
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome Length = 6181863 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 gcaggctggcggtggaggtg 123 |||||||||||||||||||| Sbjct: 1838810 gcaggctggcggtggaggtg 1838829
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 4.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 176 acgcggtggccgacttcgacggcc 199 |||||||||||| ||||||||||| Sbjct: 3610780 acgcggtggccgtcttcgacggcc 3610803
>gb|U27338.1|PFU27338 Plasmodium falciparum erythrocyte membrane protein 1, Malayan Camp variant 1 (MCvar-1 PfEMP1) gene, complete cds Length = 10213 Score = 40.1 bits (20), Expect = 4.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 tggcggtggaggtggtggac 129 |||||||||||||||||||| Sbjct: 5212 tggcggtggaggtggtggac 5193 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,275,264 Number of Sequences: 3902068 Number of extensions: 2275264 Number of successful extensions: 58628 Number of sequences better than 10.0: 77 Number of HSP's better than 10.0 without gapping: 77 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56947 Number of HSP's gapped (non-prelim): 1681 length of query: 357 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 335 effective length of database: 17,147,199,772 effective search space: 5744311923620 effective search space used: 5744311923620 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
