>gb|AC122587.5| Rattus norvegicus  BAC CH230-173H6 (Children's Hospital Oakland
             Research Institute Rat (BN/SsNHsd/MCW) BAC library)
             complete sequence
          Length = 202972

 Score = 46.1 bits (23), Expect = 0.062
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 45    ctccacccctcccccattcccaa 67
             |||||||||||||||||||||||
Sbjct: 80196 ctccacccctcccccattcccaa 80174

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
              complete sequence
          Length = 27566993

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 7      ctagggttttcgccatggccaccgcccacc 36
              ||||||||||||||||||| ||| ||||||
Sbjct: 644400 ctagggttttcgccatggctaccacccacc 644429

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 7      ctagggttttcgccatggccaccgcccacc 36
              ||||||||||||||||||| ||| ||||||
Sbjct: 608651 ctagggttttcgccatggctaccacccacc 608680

>gb|AC128709.6| Homo sapiens 3 BAC RP13-616I3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 163031

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 35    cctcgagctcctccacccctccccca 60
             |||| |||||||||||||||||||||
Sbjct: 42135 cctccagctcctccacccctccccca 42110

>dbj|AK068644.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013158J09,
          full insert sequence
          Length = 3185

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                        
Query: 7  ctagggttttcgccatggccaccgcccacc 36
          ||||||||||||||||||| ||| ||||||
Sbjct: 31 ctagggttttcgccatggctaccacccacc 60

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 7      ctagggttttcgccatggccaccgcccacc 36
              ||||||||||||||||||| ||| ||||||
Sbjct: 608651 ctagggttttcgccatggctaccacccacc 608680

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 7      ctagggttttcgccatggccaccgcccacc 36
              ||||||||||||||||||| ||| ||||||
Sbjct: 644400 ctagggttttcgccatggctaccacccacc 644429

>emb|BX000512.1|CNS08CE2 Oryza sativa chromosome 11, . BAC OSJNBa0025K19 of library OSJNBa from
              chromosome 11 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 181322

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 7      ctagggttttcgccatggccaccgcccacc 36
              ||||||||||||||||||| ||| ||||||
Sbjct: 134321 ctagggttttcgccatggctaccacccacc 134292

>emb|BX000510.1|CNS08CE0 Oryza sativa chromosome 12, . BAC OJ1769_D07 of library Monsanto from
            chromosome 12 of cultivar Nipponbare of ssp. japonica of
            Oryza sativa (rice), complete sequence
          Length = 115859

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 7    ctagggttttcgccatggccaccgcccacc 36
            ||||||||||||||||||| ||| ||||||
Sbjct: 4443 ctagggttttcgccatggctaccacccacc 4414

>ref|NM_006160.2| Homo sapiens neurogenic differentiation 2 (NEUROD2), mRNA
          Length = 2019

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 48   cacccctcccccattcccaat 68
            |||||||||||||||||||||
Sbjct: 1635 cacccctcccccattcccaat 1655

>emb|CR954985.1| Human DNA sequence from clone XX-HCC1954_35K08, complete sequence
          Length = 164576

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 48     cacccctcccccattcccaat 68
              |||||||||||||||||||||
Sbjct: 132260 cacccctcccccattcccaat 132240

>gb|BC022481.1| Homo sapiens neurogenic differentiation 2, mRNA (cDNA clone MGC:26304
            IMAGE:4816285), complete cds
          Length = 2019

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 48   cacccctcccccattcccaat 68
            |||||||||||||||||||||
Sbjct: 1635 cacccctcccccattcccaat 1655

>gb|AC087491.5| Homo sapiens chromosome 17, clone RP11-62N23, complete sequence
          Length = 157216

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 48    cacccctcccccattcccaat 68
             |||||||||||||||||||||
Sbjct: 35763 cacccctcccccattcccaat 35743

>emb|CR624963.1| full-length cDNA clone CS0DF008YN08 of Fetal brain of Homo sapiens
            (human)
          Length = 1938

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 48   cacccctcccccattcccaat 68
            |||||||||||||||||||||
Sbjct: 1586 cacccctcccccattcccaat 1606

>emb|CR590531.1| full-length cDNA clone CS0DF027YM01 of Fetal brain of Homo sapiens
            (human)
          Length = 1950

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 48   cacccctcccccattcccaat 68
            |||||||||||||||||||||
Sbjct: 1617 cacccctcccccattcccaat 1637

>dbj|AB021742.1| Homo sapiens NDRF mRNA for neuroD-related factor, complete cds
          Length = 6246

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 48   cacccctcccccattcccaat 68
            |||||||||||||||||||||
Sbjct: 4613 cacccctcccccattcccaat 4633

>gb|U58681.1|HSU58681 Homo sapiens neurogenic basic-helix-loop-helix protein (NeuroD2)
            gene, complete cds
          Length = 1550

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 48   cacccctcccccattcccaat 68
            |||||||||||||||||||||
Sbjct: 1491 cacccctcccccattcccaat 1511

>gb|AY485644.1| Triticum monococcum phosphatidylserine decarboxylase, ZCCT2, ZCCT1, and
             SNF2P genes, complete cds; nucellin pseudogene, complete
             sequence; putative transposase, phosphatidylinositol
             phosphatidylcholine transfer protein sec14 cytosolic-like
             protein, and phytochrome P450-like protein genes, complete
             cds; and unknown genes
          Length = 438828

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 273   ggcgctggcgatcgagctcc 292
             ||||||||||||||||||||
Sbjct: 25791 ggcgctggcgatcgagctcc 25810

>gb|AC113983.13| Mus musculus chromosome 5, clone RP24-95M11, complete sequence
          Length = 198590

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 39    gagctcctccacccctcccccatt 62
             |||||||||| |||||||||||||
Sbjct: 27333 gagctcctcctcccctcccccatt 27310

>ref|XM_607249.2| PREDICTED: Bos taurus similar to Neurogenic differentiation factor 2
            (NeuroD2) (Brain bHLH protein KW8) (LOC528817), mRNA
          Length = 1793

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 49   acccctcccccattcccaat 68
            ||||||||||||||||||||
Sbjct: 1440 acccctcccccattcccaat 1459

>dbj|AK048555.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
            library, clone:C130073J24 product:unclassifiable, full
            insert sequence
          Length = 3914

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 42   ctcctccacccctcccccattccc 65
            |||||||| |||||||||||||||
Sbjct: 2394 ctcctccatccctcccccattccc 2417

>ref|XM_561521.1| Anopheles gambiae str. PEST ENSANGP00000028107 (ENSANGG00000022232),
            partial mRNA
          Length = 1680

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 32   ccacctcgagctcctccacc 51
            ||||||||||||||||||||
Sbjct: 1397 ccacctcgagctcctccacc 1416

>dbj|D90360.1|MUSCYTK Mus musculus gene for cytokeratin endo A, complete cds
          Length = 10247

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 47   ccacccctcccccattccca 66
            ||||||||||||||||||||
Sbjct: 7372 ccacccctcccccattccca 7353

>emb|AL732478.7| Mouse DNA sequence from clone RP23-42N14 on chromosome 2, complete
             sequence
          Length = 203434

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 42    ctcctccacccctcccccattccc 65
             |||||||| |||||||||||||||
Sbjct: 66540 ctcctccatccctcccccattccc 66563


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,625,578
Number of Sequences: 3902068
Number of extensions: 1625578
Number of successful extensions: 37851
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37707
Number of HSP's gapped (non-prelim): 144
length of query: 294
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 272
effective length of database: 17,147,199,772
effective search space: 4664038337984
effective search space used: 4664038337984
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)