>SDE3_ARATH (Q8GYD9) Probable RNA helicase SDE3 (EC 3.6.1.-) (Silencing|
           defective protein 3)
          Length = 1002

 Score = 35.4 bits (80), Expect = 0.035
 Identities = 15/24 (62%), Positives = 18/24 (75%)
 Frame = +2

Query: 254 GHHSDDEYSVAGDKPEVEFMDXQN 325
           G+ SDDEYSV  DK E+ F+D QN
Sbjct: 5   GYKSDDEYSVIADKGEIGFIDYQN 28

>MPC2_RALEU (P17296) Metapyrocatechase 2 (EC 1.13.11.2) (MPC) (CatO2ase)|
           (Catechol 2,3-dioxygenase II)
          Length = 320

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 150 PDGGLIQSNLSAAVPPHLRSPARLRASPRGQ 242
           PDG L+Q  +     P  +SPARL  +P GQ
Sbjct: 121 PDGNLVQVKIGPKTSPSSKSPARLEGAPGGQ 151

>Y5224_ARATH (Q94EG6) Protein At5g02240|
          Length = 253

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -2

Query: 255 PTLNPDLEAKRGGGPAI--GDGEEPQRIDWI 169
           P + P  +  +GG P     DG+ P+++DWI
Sbjct: 81  PKMKPGFDPTKGGRPEFIFEDGQYPEQVDWI 111

>VGFR2_HUMAN (P35968) Vascular endothelial growth factor receptor 2 precursor (EC|
            2.7.10.1) (VEGFR-2) (Kinase insert domain receptor)
            (Protein-tyrosine kinase receptor Flk-1) (CD309 antigen)
          Length = 1356

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
 Frame = +2

Query: 239  SGFKVGHHSDDEYSVAGDKPEVEFM-----DXQNGHTLQDYQSDDG 361
            SG++ G+HSDD  +      E E +       Q G T Q  Q D G
Sbjct: 1303 SGYQSGYHSDDTDTTVYSSEEAELLKLIEIGVQTGSTAQILQPDSG 1348

>LCMT2_CANGA (Q6FXA5) Leucine carboxyl methyltransferase 2 (EC 2.1.1.-)|
          Length = 674

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +2

Query: 236 RSGFKVGHHSDDEYSVAGDKPEVEFMDXQNGHTLQDYQSDD 358
           R G K+ H +DDEY V G        D  N     + +SD+
Sbjct: 580 RYGSKIIHLTDDEYLVVGGTSPDRLFDASNSIITYNSRSDE 620

>TIG_DESPS (Q6AK58) Trigger factor (TF)|
          Length = 441

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 260 HSDDEYSVAGDKPEVEFMDXQNGHTLQDYQSDD 358
           H  D  +V GD   V+F   +NG  L   +SDD
Sbjct: 152 HVVDRPAVDGDMVTVDFQGFENGEALAQVKSDD 184

>XKR4_PANTR (Q49LS4) XK-related protein 4|
          Length = 650

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 26/91 (28%), Positives = 31/91 (34%), Gaps = 4/91 (4%)
 Frame = -2

Query: 306 STSGLSPATEYSSSE*CPTLNPDLEAKRGGGPAIGDGE----EPQRIDWIXXXXXXXXXX 139
           ST   + A   SS   CP    D +   GGG A G+GE     PQR              
Sbjct: 172 STEDSATAAAASS---CPQPGADCKTVVGGGSAAGEGEARPSTPQR-----QASNASKSN 223

Query: 138 XGSRKERHEQSGFMREGGRERDCSEEGV*WL 46
             +       SG  R  G+ R  S     WL
Sbjct: 224 IAAANSGSNSSGATRASGKHRSASCSFCIWL 254

>XKR4_HUMAN (Q5GH76) XK-related protein 4|
          Length = 650

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 26/91 (28%), Positives = 31/91 (34%), Gaps = 4/91 (4%)
 Frame = -2

Query: 306 STSGLSPATEYSSSE*CPTLNPDLEAKRGGGPAIGDGE----EPQRIDWIXXXXXXXXXX 139
           ST   + A   SS   CP    D +   GGG A G+GE     PQR              
Sbjct: 172 STEDSATAAAASS---CPQPGADCKTVVGGGSAAGEGEARPSTPQR-----QASNASKSN 223

Query: 138 XGSRKERHEQSGFMREGGRERDCSEEGV*WL 46
             +       SG  R  G+ R  S     WL
Sbjct: 224 IAAANSGSNSSGATRASGKHRSASCSFCIWL 254

>IF4B_MOUSE (Q8BGD9) Eukaryotic translation initiation factor 4B (eIF-4B)|
          Length = 611

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 230 ASRSGFKVGHHSDDEYSVAGDKPEVEF--MDXQNGHTLQDYQSDD 358
           + R  F  G+  DD+Y   GD+ E  +   D ++  +  DY  DD
Sbjct: 276 SGRRAFGSGYRRDDDYRGGGDRYEDRYDRRDDRSWSSRDDYSRDD 320

>IF4B_HUMAN (P23588) Eukaryotic translation initiation factor 4B (eIF-4B)|
          Length = 611

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 230 ASRSGFKVGHHSDDEYSVAGDKPEVEF--MDXQNGHTLQDYQSDD 358
           + R  F  G+  DD+Y   GD+ E  +   D ++  +  DY  DD
Sbjct: 276 SGRRAFGSGYRRDDDYRGGGDRYEDRYDRRDDRSWSSRDDYSRDD 320

>SYN3_RAT (O70441) Synapsin-3 (Synapsin III)|
          Length = 579

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 150 PDGGLIQSNLSAAVPPHLRSPARLRASPRGQ 242
           P GG  Q+   +  PP  RSP++ R SP+GQ
Sbjct: 437 PQGGPRQAQ--SPQPPRSRSPSQQRLSPQGQ 465

>SYN3_MOUSE (Q8JZP2) Synapsin-3 (Synapsin III)|
          Length = 579

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 150 PDGGLIQSNLSAAVPPHLRSPARLRASPRGQ 242
           P GG  Q+   +  PP  RSP++ R SP+GQ
Sbjct: 437 PQGGPRQAQ--SPQPPRSRSPSQQRLSPQGQ 465


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,867,740
Number of Sequences: 219361
Number of extensions: 587236
Number of successful extensions: 1652
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1652
length of database: 80,573,946
effective HSP length: 95
effective length of database: 59,734,651
effective search space used: 1433631624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)