>PSD2_HUMAN (Q13200) 26S proteasome non-ATPase regulatory subunit 2 (26S|
           proteasome regulatory subunit RPN1) (26S proteasome
           regulatory subunit S2) (26S proteasome subunit p97)
           (Tumor necrosis factor type 1 receptor-associated
           protein 2) (55.11 protein)
          Length = 908

 Score = 82.4 bits (202), Expect = 6e-16
 Identities = 40/70 (57%), Positives = 52/70 (74%)
 Frame = +1

Query: 295 QLELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKTYYESMP 474
           +LE+ V R  + D  + R ALE +R++IRS+T+SMTSVPKPLKFLRPHYG LK  YE+M 
Sbjct: 55  ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMA 114

Query: 475 ESELKKYMAD 504
             E K++ AD
Sbjct: 115 PGENKRFAAD 124

>PSD2_MOUSE (Q8VDM4) 26S proteasome non-ATPase regulatory subunit 2 (26S|
           proteasome regulatory subunit RPN1) (26S proteasome
           regulatory subunit S2) (26S proteasome subunit p97)
          Length = 908

 Score = 80.5 bits (197), Expect = 2e-15
 Identities = 40/70 (57%), Positives = 51/70 (72%)
 Frame = +1

Query: 295 QLELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKTYYESMP 474
           +LE+ V R  + D  + R ALE +R++IRS+T+SMTSVPKPLKFLRPHYG LK  YE+M 
Sbjct: 55  ELEMLVERLGEKDTSLYRPALEELRRQIRSSTTSMTSVPKPLKFLRPHYGKLKEIYENMA 114

Query: 475 ESELKKYMAD 504
             E K + AD
Sbjct: 115 PGENKCFAAD 124

>RPN1_SCHPO (P87048) 26S proteasome regulatory subunit rpn1 (Proteasome|
           non-ATPase subunit mts4) (19S regulatory cap region of
           26S protease subunit 2)
          Length = 891

 Score = 71.2 bits (173), Expect = 1e-12
 Identities = 36/69 (52%), Positives = 47/69 (68%)
 Frame = +1

Query: 298 LELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKTYYESMPE 477
           LEL V   QD  P +   +L  +++ IR++TSSMT+VPKPLKFLRPHY TL   Y+S P+
Sbjct: 57  LELLVQAVQDATPELVGSSLTQLKEIIRTSTSSMTAVPKPLKFLRPHYFTLVKIYDSWPQ 116

Query: 478 SELKKYMAD 504
           S  K  +AD
Sbjct: 117 SPQKTQLAD 125

>RPN1_NEUCR (Q7S8R8) 26S proteasome regulatory subunit rpn-1|
          Length = 883

 Score = 65.5 bits (158), Expect = 8e-11
 Identities = 30/61 (49%), Positives = 43/61 (70%)
 Frame = +1

Query: 322 QDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKTYYESMPESELKKYMA 501
           Q+ D  + + ALE+M+  I+++TSSMT+VPKPLKFLRPHY T+   Y+  P  + K  +A
Sbjct: 48  QESDATLYKPALEAMKNSIKTSTSSMTAVPKPLKFLRPHYETMTKLYDEWPAGDDKSSLA 107

Query: 502 D 504
           D
Sbjct: 108 D 108

>RPN1_YEAST (P38764) 26S proteasome regulatory subunit RPN1 (Proteasome|
           non-ATPase subunit 1)
          Length = 992

 Score = 62.4 bits (150), Expect = 7e-10
 Identities = 30/69 (43%), Positives = 46/69 (66%)
 Frame = +1

Query: 298 LELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKTYYESMPE 477
           LEL V R ++ D  +   +L ++++ I+++TSSMT+VPKPLKFLRP Y  L + Y+   +
Sbjct: 48  LELLVERLKEDDSSLYEASLNALKESIKNSTSSMTAVPKPLKFLRPTYPDLCSIYDKWTD 107

Query: 478 SELKKYMAD 504
             LK  +AD
Sbjct: 108 PNLKSSLAD 116

>RPN1_CANGA (Q6FPV6) 26S proteasome regulatory subunit RPN1|
          Length = 983

 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 27/69 (39%), Positives = 41/69 (59%)
 Frame = +1

Query: 298 LELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKTYYESMPE 477
           LE+ V    + D  +    L  +++ I+++TSSMT+VPKPLKFLRP Y  L   Y+   +
Sbjct: 49  LEMLVQTLLEDDSKLYETTLTQLKEFIKNSTSSMTAVPKPLKFLRPFYPDLCKAYDKWSD 108

Query: 478 SELKKYMAD 504
            + K  +AD
Sbjct: 109 KDQKSSLAD 117

>UACA_MOUSE (Q8CGB3) Uveal autoantigen with coiled-coil domains and ankyrin|
           repeats protein (Nucling) (Nuclear membrane-binding
           protein)
          Length = 1411

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +1

Query: 295 QLELYVVRAQDVDPGVQ-RLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKTYYESM 471
           Q ++Y    Q   PG+   +   SM + +  +  S TS  +  + L+    TL+TYY+S 
Sbjct: 403 QGQMYTTEPQCASPGIPPHMHSRSMLRPLELSLPSQTSYSEN-EILKKELETLRTYYDSA 461

Query: 472 PESELK 489
            +  LK
Sbjct: 462 KQDRLK 467

>ELL2_HUMAN (O00472) RNA polymerase II elongation factor ELL2|
          Length = 640

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 39  PTQQRRVASVPLAPRTLASP-PAPSPNRIRPASH 137
           PT ++  A +PL P   A P P P P+   P SH
Sbjct: 354 PTSEKSAAGLPLPPAAAAIPTPPPLPSTYLPISH 387

>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2161

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 39   PTQQRRVASVPLAPRTLASPPAPSPNRIRPA 131
            P ++  +A VPLAP    +PP+P+P R   A
Sbjct: 1129 PPKEGVLAQVPLAPPQPGAPPSPAPARFSTA 1159

>PCY2_RAT (O88637) Ethanolamine-phosphate cytidylyltransferase (EC 2.7.7.14)|
           (Phosphorylethanolamine transferase)
           (CTP:phosphoethanolamine cytidylyltransferase)
          Length = 404

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = -2

Query: 121 IRFGDGAGGLARVRGASGTEATRRCCVGVY 32
           IR G GAGG A ++G  G    R  C G Y
Sbjct: 2   IRNGHGAGGAAGLKGPGGQRTVRVWCDGCY 31

>DMF1_SCHPO (P78953) Division mal foutue 1 protein|
          Length = 920

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 17/62 (27%), Positives = 30/62 (48%)
 Frame = +1

Query: 301 ELYVVRAQDVDPGVQRLALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKTYYESMPES 480
           ELY+  +++ +P +  +  +S++QE      S TS+PK     +  YG     Y  +P  
Sbjct: 357 ELYLQSSRNSEPEISTIINDSLQQENMDEDISATSIPKS----QAAYGHGSVTYHEVPRY 412

Query: 481 EL 486
            L
Sbjct: 413 NL 414

>YKY4_CAEEL (Q17963) Hypothetical WD-repeat protein C14B1.4|
          Length = 376

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +3

Query: 39  PTQQRRVASVPLAPRTLASPPAP--SPNRIRPAS 134
           PTQQ    +VP AP   +S PAP  SPN I P++
Sbjct: 15  PTQQIDQLTVPNAPDGGSSAPAPSTSPNSISPSN 48

>YACF_SHIFL (Q83MF4) UPF0289 protein yacF|
          Length = 247

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/33 (36%), Positives = 23/33 (69%)
 Frame = +1

Query: 334 PGVQRLALESMRQEIRSATSSMTSVPKPLKFLR 432
           PGV +  +E++ Q++++A S + S P+  +FLR
Sbjct: 81  PGVDQSRIEALIQQLKAAVSVLISAPRIGQFLR 113


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.309    0.128    0.362 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,646,766
Number of Sequences: 219361
Number of extensions: 591458
Number of successful extensions: 2120
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1991
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2116
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3696665728
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)