ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl12f06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_479737.1| Oryza sativa (japonica cultivar-group), mRNA 180 3e-42
2dbj|AK072300.1| Oryza sativa (japonica cultivar-group) cDNA clon... 180 3e-42
3dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 105 1e-19
4dbj|AP004584.3| Oryza sativa (japonica cultivar-group) genomic D... 105 1e-19
5dbj|AP004566.3| Oryza sativa (japonica cultivar-group) genomic D... 105 1e-19
6gb|AC132271.5| Mus musculus BAC clone RP24-338E23 from 5, comple... 42 1.6
7gb|AC160533.6| Mus musculus chromosome 5, clone RP24-242L17, com... 40 6.4
8gb|AC123869.4| Mus musculus BAC clone RP23-245M16 from 12, compl... 40 6.4
9emb|CR391949.7| Zebrafish DNA sequence from clone CH211-149B20 i... 40 6.4
10emb|X59045.1|BMCGTM B.macerans cgtM gene for cyclodextrin glucot... 40 6.4
11gb|AC011155.13| Homo sapiens chromosome 18, clone RP11-7K9, comp... 40 6.4
12gb|AC087189.3| Homo sapiens chromosome 16 clone RP11-43L5, compl... 40 6.4
13gb|AC091647.4| Homo sapiens chromosome 18, clone RP11-635D8, com... 40 6.4
14gb|AF260315.1|AF260315 Mus musculus deoxycytidine kinase (Dck) g... 40 6.4
15gb|AC098804.6| Homo sapiens chromosome 16 clone RP11-244P19, com... 40 6.4
16gb|AC155247.2| Mus musculus BAC clone RP24-302C23 from chromosom... 40 6.4
17gb|AC091059.12| Homo sapiens chromosome 17, clone RP11-567L7, co... 40 6.4
18gb|AC140001.8| Mus musculus chromosome 5, clone RP24-276E6, comp... 40 6.4
19dbj|AK098954.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.4
20dbj|AK069387.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.4
21emb|CT573017.5| Mouse DNA sequence from clone RP24-309J23 on chr... 40 6.4
22gb|AF047363.1|AF047363 Paenibacillus macerans alpha-cyclodextrin... 40 6.4
23gb|M12777.1|BACCDG B.mecerans cyclodextrin glucanotransferase (C... 40 6.4
24dbj|AP000997.1| Homo sapiens DNA, chromosome 11q23.2, clone:194K... 40 6.4 
>ref|XM_479737.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3088

 Score =  180 bits (91), Expect = 3e-42
 Identities = 154/175 (88%)
 Strand = Plus / Plus

                                                                       
Query: 257 tatgatcctctcaagaaatggatggacaactgctaccgcggggtacccctcggcggacta 316
           |||||||| || ||||||||||||||||||||||||||||| ||||||||||| ||  | 
Sbjct: 415 tatgatccactgaagaaatggatggacaactgctaccgcggtgtacccctcggtgggatt 474

                                                                       
Query: 317 ggttcaggaagtataggaagaagctacagagggtactttcagcagtttcaaatattcccc 376
           ||| |||| || ||||| ||||||||||| || || |||||||||||||| |||||||||
Sbjct: 475 ggtgcagggagcatagggagaagctacaggggatattttcagcagtttcagatattcccc 534

                                                                  
Query: 377 aggatatatgaagagaagcctatcctagccaaccagttctcagcattcgtttcgc 431
           || |||||||||||||||||||||||||| || || || ||||||||| ||||||
Sbjct: 535 agtatatatgaagagaagcctatcctagcaaatcaattttcagcattcatttcgc 589



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 61/68 (89%)
 Strand = Plus / Plus

                                                                       
Query: 102 agccaccagcaataacttggcagaggaaattcgatgatgaaggcaagaaggttgctatgc 161
           |||||||||||||| ||||| |||||| ||| ||||||||||| ||||||||||| ||| 
Sbjct: 257 agccaccagcaatatcttgggagaggacatttgatgatgaaggaaagaaggttgcaatgt 316

                   
Query: 162 ttagcatg 169
           ||||||||
Sbjct: 317 ttagcatg 324
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>dbj|AK072300.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020B06, full
           insert sequence
          Length = 3088

 Score =  180 bits (91), Expect = 3e-42
 Identities = 154/175 (88%)
 Strand = Plus / Plus

                                                                       
Query: 257 tatgatcctctcaagaaatggatggacaactgctaccgcggggtacccctcggcggacta 316
           |||||||| || ||||||||||||||||||||||||||||| ||||||||||| ||  | 
Sbjct: 415 tatgatccactgaagaaatggatggacaactgctaccgcggtgtacccctcggtgggatt 474

                                                                       
Query: 317 ggttcaggaagtataggaagaagctacagagggtactttcagcagtttcaaatattcccc 376
           ||| |||| || ||||| ||||||||||| || || |||||||||||||| |||||||||
Sbjct: 475 ggtgcagggagcatagggagaagctacaggggatattttcagcagtttcagatattcccc 534

                                                                  
Query: 377 aggatatatgaagagaagcctatcctagccaaccagttctcagcattcgtttcgc 431
           || |||||||||||||||||||||||||| || || || ||||||||| ||||||
Sbjct: 535 agtatatatgaagagaagcctatcctagcaaatcaattttcagcattcatttcgc 589



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 61/68 (89%)
 Strand = Plus / Plus

                                                                       
Query: 102 agccaccagcaataacttggcagaggaaattcgatgatgaaggcaagaaggttgctatgc 161
           |||||||||||||| ||||| |||||| ||| ||||||||||| ||||||||||| ||| 
Sbjct: 257 agccaccagcaatatcttgggagaggacatttgatgatgaaggaaagaaggttgcaatgt 316

                   
Query: 162 ttagcatg 169
           ||||||||
Sbjct: 317 ttagcatg 324
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
              complete sequence
          Length = 28434780

 Score =  105 bits (53), Expect = 1e-19
 Identities = 71/77 (92%)
 Strand = Plus / Minus

                                                                          
Query: 329    ataggaagaagctacagagggtactttcagcagtttcaaatattccccaggatatatgaa 388
              ||||| ||||||||||| || || |||||||||||||| ||||||||||| |||||||||
Sbjct: 578554 atagggagaagctacaggggatattttcagcagtttcagatattccccagtatatatgaa 578495

                               
Query: 389    gagaagcctatcctagc 405
              |||||||||||||||||
Sbjct: 578494 gagaagcctatcctagc 578478



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 50/53 (94%)
 Strand = Plus / Minus

                                                                   
Query: 257    tatgatcctctcaagaaatggatggacaactgctaccgcggggtacccctcgg 309
              |||||||| || ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 578787 tatgatccactgaagaaatggatggacaactgctaccgcggtgtacccctcgg 578735



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                          
Query: 102    agccaccagcaataacttggcagaggaaattcgatgatgaaggcaagaaggttgctatgc 161
              |||||||||||||| ||||| |||||| ||| ||||||||||| ||||||||||| ||| 
Sbjct: 579397 agccaccagcaatatcttgggagaggacatttgatgatgaaggaaagaaggttgcaatgt 579338

                      
Query: 162    ttagcatg 169
              ||||||||
Sbjct: 579337 ttagcatg 579330
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>dbj|AP004584.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0007D08
          Length = 183142

 Score =  105 bits (53), Expect = 1e-19
 Identities = 71/77 (92%)
 Strand = Plus / Minus

                                                                          
Query: 329    ataggaagaagctacagagggtactttcagcagtttcaaatattccccaggatatatgaa 388
              ||||| ||||||||||| || || |||||||||||||| ||||||||||| |||||||||
Sbjct: 168514 atagggagaagctacaggggatattttcagcagtttcagatattccccagtatatatgaa 168455

                               
Query: 389    gagaagcctatcctagc 405
              |||||||||||||||||
Sbjct: 168454 gagaagcctatcctagc 168438



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 50/53 (94%)
 Strand = Plus / Minus

                                                                   
Query: 257    tatgatcctctcaagaaatggatggacaactgctaccgcggggtacccctcgg 309
              |||||||| || ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 168747 tatgatccactgaagaaatggatggacaactgctaccgcggtgtacccctcgg 168695



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                          
Query: 102    agccaccagcaataacttggcagaggaaattcgatgatgaaggcaagaaggttgctatgc 161
              |||||||||||||| ||||| |||||| ||| ||||||||||| ||||||||||| ||| 
Sbjct: 169357 agccaccagcaatatcttgggagaggacatttgatgatgaaggaaagaaggttgcaatgt 169298

                      
Query: 162    ttagcatg 169
              ||||||||
Sbjct: 169297 ttagcatg 169290
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>dbj|AP004566.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
            clone:P0498H04
          Length = 151046

 Score =  105 bits (53), Expect = 1e-19
 Identities = 71/77 (92%)
 Strand = Plus / Minus

                                                                        
Query: 329  ataggaagaagctacagagggtactttcagcagtttcaaatattccccaggatatatgaa 388
            ||||| ||||||||||| || || |||||||||||||| ||||||||||| |||||||||
Sbjct: 5932 atagggagaagctacaggggatattttcagcagtttcagatattccccagtatatatgaa 5873

                             
Query: 389  gagaagcctatcctagc 405
            |||||||||||||||||
Sbjct: 5872 gagaagcctatcctagc 5856



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 50/53 (94%)
 Strand = Plus / Minus

                                                                 
Query: 257  tatgatcctctcaagaaatggatggacaactgctaccgcggggtacccctcgg 309
            |||||||| || ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 6165 tatgatccactgaagaaatggatggacaactgctaccgcggtgtacccctcgg 6113



 Score = 79.8 bits (40), Expect = 7e-12
 Identities = 61/68 (89%)
 Strand = Plus / Minus

                                                                        
Query: 102  agccaccagcaataacttggcagaggaaattcgatgatgaaggcaagaaggttgctatgc 161
            |||||||||||||| ||||| |||||| ||| ||||||||||| ||||||||||| ||| 
Sbjct: 6775 agccaccagcaatatcttgggagaggacatttgatgatgaaggaaagaaggttgcaatgt 6716

                    
Query: 162  ttagcatg 169
            ||||||||
Sbjct: 6715 ttagcatg 6708
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>gb|AC132271.5| Mus musculus BAC clone RP24-338E23 from 5, complete sequence
          Length = 173029

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 435   ctggtgggaagagctactccacggt 459
             ||||||||||||||||| |||||||
Sbjct: 18299 ctggtgggaagagctacgccacggt 18275
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>gb|AC160533.6| Mus musculus chromosome 5, clone RP24-242L17, complete sequence
          Length = 170409

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 23    tggctccttcatcggtctctgaag 46
             ||||||||||||||| ||||||||
Sbjct: 62083 tggctccttcatcggactctgaag 62060
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>gb|AC123869.4| Mus musculus BAC clone RP23-245M16 from 12, complete sequence
          Length = 167795

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 101    cagccaccagcaataacttg 120
              ||||||||||||||||||||
Sbjct: 114847 cagccaccagcaataacttg 114866
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>emb|CR391949.7| Zebrafish DNA sequence from clone CH211-149B20 in linkage group 9,
             complete sequence
          Length = 162252

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 431   catcctggtgggaagagctactcc 454
             ||||| ||||||||||||||||||
Sbjct: 34449 catccaggtgggaagagctactcc 34472
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>emb|X59045.1|BMCGTM B.macerans cgtM gene for cyclodextrin glucotransferase
          Length = 2631

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 76   ggcacgtttgcacgtcgact 95
            ||||||||||||||||||||
Sbjct: 2391 ggcacgtttgcacgtcgact 2372
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>gb|AC011155.13| Homo sapiens chromosome 18, clone RP11-7K9, complete sequence
          Length = 158371

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 195   ccttgattttcaaaatgctt 214
             ||||||||||||||||||||
Sbjct: 20839 ccttgattttcaaaatgctt 20858
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>gb|AC087189.3| Homo sapiens chromosome 16 clone RP11-43L5, complete sequence
          Length = 184877

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 185    acaattatacccttgattttcaaa 208
              ||||||| ||||||||||||||||
Sbjct: 174423 acaattagacccttgattttcaaa 174400
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>gb|AC091647.4| Homo sapiens chromosome 18, clone RP11-635D8, complete sequence
          Length = 173368

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 195   ccttgattttcaaaatgctt 214
             ||||||||||||||||||||
Sbjct: 27486 ccttgattttcaaaatgctt 27467
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>gb|AF260315.1|AF260315 Mus musculus deoxycytidine kinase (Dck) gene, complete cds
          Length = 20250

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 23    tggctccttcatcggtctctgaag 46
             ||||||||||||||| ||||||||
Sbjct: 13354 tggctccttcatcggactctgaag 13377
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>gb|AC098804.6| Homo sapiens chromosome 16 clone RP11-244P19, complete sequence
          Length = 62309

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 185  acaattatacccttgattttcaaa 208
            ||||||| ||||||||||||||||
Sbjct: 3029 acaattagacccttgattttcaaa 3006
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>gb|AC155247.2| Mus musculus BAC clone RP24-302C23 from chromosome 12, complete sequence
          Length = 144348

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 101    cagccaccagcaataacttg 120
              ||||||||||||||||||||
Sbjct: 114471 cagccaccagcaataacttg 114452
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>gb|AC091059.12| Homo sapiens chromosome 17, clone RP11-567L7, complete sequence
          Length = 179084

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 188    attatacccttgattttcaa 207
              ||||||||||||||||||||
Sbjct: 123282 attatacccttgattttcaa 123301
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>gb|AC140001.8| Mus musculus chromosome 5, clone RP24-276E6, complete sequence
          Length = 130466

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 23    tggctccttcatcggtctctgaag 46
             ||||||||||||||| ||||||||
Sbjct: 60497 tggctccttcatcggactctgaag 60474
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>dbj|AK098954.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013062A02, full
           insert sequence
          Length = 3183

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 317 ggttcaggaagtataggaagaagctaca 344
           |||||||||||||| ||||| |||||||
Sbjct: 507 ggttcaggaagtattggaaggagctaca 534
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>dbj|AK069387.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023016D17, full
           insert sequence
          Length = 3250

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 317 ggttcaggaagtataggaagaagctaca 344
           |||||||||||||| ||||| |||||||
Sbjct: 574 ggttcaggaagtattggaaggagctaca 601
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>emb|CT573017.5| Mouse DNA sequence from clone RP24-309J23 on chromosome 17, complete
            sequence
          Length = 157643

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 147  agaaggttgctatgcttagc 166
            ||||||||||||||||||||
Sbjct: 9590 agaaggttgctatgcttagc 9571
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>gb|AF047363.1|AF047363 Paenibacillus macerans alpha-cyclodextrin glucanotransferase (cgt)
            gene, complete cds
          Length = 3025

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 76   ggcacgtttgcacgtcgact 95
            ||||||||||||||||||||
Sbjct: 2928 ggcacgtttgcacgtcgact 2909
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>gb|M12777.1|BACCDG B.mecerans cyclodextrin glucanotransferase (CD) gene, complete cds
          Length = 2502

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 76   ggcacgtttgcacgtcgact 95
            ||||||||||||||||||||
Sbjct: 2262 ggcacgtttgcacgtcgact 2243
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>dbj|AP000997.1| Homo sapiens DNA, chromosome 11q23.2, clone:194K16, the region having
             tumor suppressor activity, complete sequence
          Length = 130448

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 167   atggccactgatatattgacaatt 190
             ||||||||||| ||||||||||||
Sbjct: 87745 atggccactgaaatattgacaatt 87722


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,069,630
Number of Sequences: 3902068
Number of extensions: 4069630
Number of successful extensions: 78603
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 78540
Number of HSP's gapped (non-prelim): 63
length of query: 477
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 455
effective length of database: 17,147,199,772
effective search space: 7801975896260
effective search space used: 7801975896260
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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