ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl12f05 |
|---|---|
| Clone Library Name | barley_pub |
>DYN1_HUMAN (Q05193) Dynamin-1 (EC 3.6.5.5)| Length = 864 Score = 30.8 bits (68), Expect = 0.81 Identities = 23/65 (35%), Positives = 28/65 (43%) Frame = +1 Query: 28 GPAVGCRT*STPSSALFLHGPAVGSRPSATPISHRAPSQLLRDPKHRSNPLFAP*RSGRG 207 GPA G P+ + P V SRP A+P P Q+ P P P RSG+ Sbjct: 797 GPAPG----PPPAGSALGGAPPVPSRPGASPDPFGPPPQVPSRPNRA--PPGVPSRSGQA 850 Query: 208 QSSRP 222 SRP Sbjct: 851 SPSRP 855
>MAST3_HUMAN (O60307) Microtubule-associated serine/threonine-protein kinase 3 (EC| 2.7.11.1) Length = 1309 Score = 30.8 bits (68), Expect = 0.81 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Frame = +2 Query: 14 RVPSMDQPSDAAHDPPQARLSSSMD-QPSEAAHQPPQSL 127 R P+ D P+D PP A SSS P+ A H P SL Sbjct: 1123 RSPAPDVPADTTASPPSASPSSSSPASPAAAGHTRPSSL 1161
>AGRN_HUMAN (O00468) Agrin precursor| Length = 2045 Score = 30.0 bits (66), Expect = 1.4 Identities = 25/72 (34%), Positives = 31/72 (43%), Gaps = 4/72 (5%) Frame = -3 Query: 224 QGRLDCPLPDLHGA----NRGLDLCLGSRRS*EGAR*EIGVADGRLPTAGPWRKRAELGV 57 QGR CP P A RG C R + +GA + DGR + WR++AE Sbjct: 390 QGRDQCPEPCRFNAVCLSRRGRPRCSCDRVTCDGAYRPVCAQDGRTYDSDCWRQQAE--- 446 Query: 56 DHVRHPTAGPSK 21 R A PSK Sbjct: 447 --CRQQRAIPSK 456
>UBP49_HUMAN (Q70CQ1) Ubiquitin carboxyl-terminal hydrolase 49 (EC 3.1.2.15)| (Ubiquitin thioesterase 49) (Ubiquitin-specific-processing protease 49) (Deubiquitinating enzyme 49) Length = 688 Score = 29.6 bits (65), Expect = 1.8 Identities = 22/52 (42%), Positives = 25/52 (48%), Gaps = 7/52 (13%) Frame = +1 Query: 55 STP---SSALFLHGPA----VGSRPSATPISHRAPSQLLRDPKHRSNPLFAP 189 STP S+ L LH P SRP+A P S R P+ L K R P AP Sbjct: 202 STPPRKSARLLLHTPRDAGPAASRPAALPTSRRVPAATL---KLRRQPAMAP 250
>ADDA_HUMAN (P35611) Alpha-adducin (Erythrocyte adducin alpha subunit)| Length = 737 Score = 29.3 bits (64), Expect = 2.4 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 3/63 (4%) Frame = +2 Query: 41 DAAHDPPQARLSSSMDQPSEAAHQPPQSLTELLLSFSVIPSIDPIPCSRH---EDQEEDS 211 D + D P L M + E AH+PP S TE S P+ DP P + EE + Sbjct: 643 DLSPDEPSEALGFPMLEKEEEAHRPP-SPTEAPTEASPEPAPDPAPVAEEAAPSAVEEGA 701 Query: 212 QAD 220 AD Sbjct: 702 AAD 704
>EMBB_MYCLE (Q9CDA9) Probable arabinosyltransferase B (EC 2.4.2.-)| Length = 1083 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 6/36 (16%) Frame = -2 Query: 189 WREQGIGSMLGITEKLRRSSV------RDWGG*WAA 100 W + G +LGIT+ L R+ V RDWG W + Sbjct: 1013 WEDGANGGLLGITDLLLRAHVMSTYLARDWGRDWGS 1048
>ATBF1_HUMAN (Q15911) Alpha-fetoprotein enhancer-binding protein (AT motif-binding| factor) (AT-binding transcription factor 1) Length = 3703 Score = 28.9 bits (63), Expect = 3.1 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 8/65 (12%) Frame = +2 Query: 17 VPSMDQPSDAAHDPPQARLSSSMDQPSEAAHQP--------PQSLTELLLSFSVIPSIDP 172 +PS+ QP A PPQ L S PS+ +H P PQ L L P + P Sbjct: 2477 LPSLPQPPPQA-PPPQCPLPQSSPSPSQLSHLPLKPLHTSTPQQLANL------PPQLIP 2529 Query: 173 IPCSR 187 C + Sbjct: 2530 YQCDQ 2534
>YO128_YEAST (Q08281) WD-repeat protein YOL138C| Length = 1341 Score = 28.5 bits (62), Expect = 4.0 Identities = 18/49 (36%), Positives = 27/49 (55%) Frame = +2 Query: 59 PQARLSSSMDQPSEAAHQPPQSLTELLLSFSVIPSIDPIPCSRHEDQEE 205 PQA ++S D+PS+A +P L E L + +IP P +ED +E Sbjct: 939 PQAFRANS-DEPSDAEKKPVSKLKEQLKNTEIIPYAQP-----NEDSDE 981
>RAD21_XENLA (O93310) Double-strand-break repair protein rad21 homolog (SCC1| homolog) Length = 629 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/65 (23%), Positives = 30/65 (46%) Frame = +2 Query: 17 VPSMDQPSDAAHDPPQARLSSSMDQPSEAAHQPPQSLTELLLSFSVIPSIDPIPCSRHED 196 +P M + PP + P E + PQS+++L+ +++P + E+ Sbjct: 483 MPMMQEAEPQIEMPPPP-----LPPPLELPPEEPQSISDLIPELNLLPEKEKEKDEEEEE 537 Query: 197 QEEDS 211 +EED+ Sbjct: 538 EEEDT 542
>PUR1_SHIFL (P0AG17) Amidophosphoribosyltransferase (EC 2.4.2.14) (Glutamine| phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPATase) Length = 504 Score = 28.5 bits (62), Expect = 4.0 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = -3 Query: 80 RKRAELGVDHVRHPTAGPSKA 18 R + +G+ HVR+PTAG S A Sbjct: 62 RLQGNMGIGHVRYPTAGSSSA 82
>PUR1_ECOLI (P0AG16) Amidophosphoribosyltransferase (EC 2.4.2.14) (Glutamine| phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPATase) Length = 504 Score = 28.5 bits (62), Expect = 4.0 Identities = 11/21 (52%), Positives = 15/21 (71%) Frame = -3 Query: 80 RKRAELGVDHVRHPTAGPSKA 18 R + +G+ HVR+PTAG S A Sbjct: 62 RLQGNMGIGHVRYPTAGSSSA 82
>ATBF1_MOUSE (Q61329) Alpha-fetoprotein enhancer-binding protein (AT motif-binding| factor) (AT-binding transcription factor 1) Length = 3726 Score = 28.5 bits (62), Expect = 4.0 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 8/64 (12%) Frame = +2 Query: 20 PSMDQPSDAAHDPPQARLSSSMDQPSEAAHQP--------PQSLTELLLSFSVIPSIDPI 175 PS+ QP A PPQ L S PS+ +H P PQ L L P + P Sbjct: 2487 PSLPQPPPQA-PPPQCPLPQSSPSPSQLSHLPLKPLHTSTPQQLANL------PPQLIPY 2539 Query: 176 PCSR 187 C + Sbjct: 2540 QCDQ 2543
>BIM1_ARATH (Q9LEZ3) Transcription factor BIM1 (BES1-interacting Myc-like| protein 1) (Transcription factor EN 126) (AtbHLH 46) Length = 530 Score = 28.1 bits (61), Expect = 5.3 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Frame = +2 Query: 26 MDQPSDAAHDP-PQARLSSSMDQPSEAAHQPPQSLTELLLSFSVIPSIDPIPCSRHEDQE 202 +D P+ A P P + S+S P A + PQ + S +V PS P SR + +E Sbjct: 389 IDHPTTATTSPFPLSIQSNSFFSPVIAGNPVPQFHARVASSEAVEPS----PSSRSQKEE 444 Query: 203 EDSQ 214 ED + Sbjct: 445 EDEE 448
>MGP3_MYCPN (Q50341) Mgp-operon protein 3 precursor (ORF-3 protein) (Mgp3)| Length = 1218 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 3/39 (7%) Frame = -1 Query: 253 SFAHSPFFL--SKVGLTVLF-LIFMARTGDWIYAWDHGE 146 SF+++PF S V LT L + ++A +G W Y +D+GE Sbjct: 855 SFSYTPFGSAESAVDLTTLKDVTYIAESGLWFYTFDNGE 893
>DED1_CANAL (Q5A4E2) ATP-dependent RNA helicase DED1 (EC 3.6.1.-)| Length = 672 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 2/46 (4%) Frame = -2 Query: 171 GSMLGITEKLRRSSVRDWGG*WAASDGW--SMEEESRAWGGSCAAS 40 GS G + RRS WG + + GW S S WGG+ ++S Sbjct: 593 GSSRGPSRDFRRSGNSGWGN--SGNSGWGNSGNASSSGWGGNSSSS 636
>Y352_TREPA (O83371) Hypothetical protein TP0352| Length = 85 Score = 28.1 bits (61), Expect = 5.3 Identities = 10/24 (41%), Positives = 16/24 (66%) Frame = -2 Query: 126 RDWGG*WAASDGWSMEEESRAWGG 55 R+WG + +GWS+E +S +W G Sbjct: 19 RNWGTLSTSGNGWSLELKSISWNG 42
>PDE4A_MOUSE (O89084) cAMP-dependent 3',5'-cyclic phosphodiesterase 4A (EC| 3.1.4.17) Length = 844 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Frame = +2 Query: 8 DLRVPSMDQPSDAAHDPPQARLSSSMDQPSEAAHQPPQSLTELL-LSFSVIPSIDP 172 D R +M+Q P ++ S+ Q + +AH P+ E + SFS+ SI P Sbjct: 725 DTRAQAMEQSKVKGQSPAVVEVAESLKQETASAHGAPEESAEAVGHSFSLETSILP 780
>SRBP1_HUMAN (P36956) Sterol regulatory element-binding protein 1 (SREBP-1)| (Sterol regulatory element-binding transcription factor 1) Length = 1147 Score = 28.1 bits (61), Expect = 5.3 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 6/63 (9%) Frame = +2 Query: 23 SMDQPSDAAHDPPQARLSSSMD------QPSEAAHQPPQSLTELLLSFSVIPSIDPIPCS 184 S D S + PP A LSSS++ Q + + PPQ L + +P+ P P Sbjct: 63 SPDTSSPGSLSPPPATLSSSLEAFLSGPQAAPSPLSPPQPAPTPLKMYPSMPAFSPGPGI 122 Query: 185 RHE 193 + E Sbjct: 123 KEE 125
>EMBB_MYCSM (Q50395) Probable arabinosyltransferase B (EC 2.4.2.-)| Length = 1082 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 6/36 (16%) Frame = -2 Query: 189 WREQGIGSMLGITEKLRRSSV------RDWGG*WAA 100 W++ G +LGIT+ L R+SV +DWG W + Sbjct: 1012 WQDGINGGLLGITDLLLRASVMSTYLSQDWGQDWGS 1047
>VTU2_DROME (P13238) Vitelline membrane protein Vm26Ab precursor (Protein TU-4)| (Protein SV23) Length = 168 Score = 27.7 bits (60), Expect = 6.9 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%) Frame = +2 Query: 20 PSMDQPSDAAHDPPQARLSSSMDQPSEAAH----QPPQSLTELLLSFSVIPSIDPIPCS 184 P+ P+ A+ P A S+ P+ +A PP L FS PS+ P+PCS Sbjct: 86 PAYSAPAAPAYSAPAAPAYSAPAAPAYSAPASIPSPPCPKNYL---FSCQPSLQPVPCS 141
>POM1_SCHPO (Q09690) Dual specificity protein kinase pom1 (EC 2.7.12.1)| Length = 1087 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/47 (34%), Positives = 22/47 (46%) Frame = +2 Query: 38 SDAAHDPPQARLSSSMDQPSEAAHQPPQSLTELLLSFSVIPSIDPIP 178 SD+A PP RLS + Q S +P + IPS+ P+P Sbjct: 509 SDSASPPPVPRLSITRSQVSREPEKPEE-----------IPSVPPLP 544
>AMPH_HUMAN (P49418) Amphiphysin| Length = 695 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/49 (26%), Positives = 26/49 (53%) Frame = +2 Query: 62 QARLSSSMDQPSEAAHQPPQSLTELLLSFSVIPSIDPIPCSRHEDQEED 208 +A++ + + +E+A + L + VIPS+ P S HE++ E+ Sbjct: 509 EAKIGTETTEGAESAQPEAEELEATVPQEKVIPSVVIEPASNHEEEGEN 557
>RHLB_XANOR (Q5GUR8) ATP-dependent RNA helicase rhlB (EC 3.6.1.-)| Length = 574 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = +1 Query: 88 PAVGSRPSATPISHRAPSQLLRDPKHRSN 174 PAV S P A P + R P+Q++ P +N Sbjct: 523 PAVASTPIAAPAAPRKPTQVVATPVRAAN 551
>NPAS2_MOUSE (P97460) Neuronal PAS domain protein 2 (Neuronal PAS2)| Length = 816 Score = 27.7 bits (60), Expect = 6.9 Identities = 19/69 (27%), Positives = 31/69 (44%) Frame = +2 Query: 5 ADLRVPSMDQPSDAAHDPPQARLSSSMDQPSEAAHQPPQSLTELLLSFSVIPSIDPIPCS 184 AD+RV + A DPP + S + +++ +PPQ L + S +PS P P + Sbjct: 354 ADVRVERRQEL--ALEDPPTEAMHPSAVKEKDSSLEPPQPFNALDMGASGLPS-SPSPSA 410 Query: 185 RHEDQEEDS 211 + S Sbjct: 411 SSRSSHKSS 419
>WBS14_CAEEL (P41846) WBSCR14 protein homolog (Mlx interactor)| Length = 1009 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%) Frame = +2 Query: 11 LRVPSMDQPSDAAHDPPQARLSSSMD---QPSEAAHQPPQSLTEL 136 +R P+ DQPS +A PQ R S+S + A QS++++ Sbjct: 323 MRTPTNDQPSISAQQIPQMRRSASSSASLHQMQVAQAQAQSISQI 367
>ZIPA_SALTY (P0A2N6) Cell division protein zipA homolog| Length = 328 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = +2 Query: 32 QPSDAAHDPPQARLSSSMDQPSEAAHQPPQ 121 QP AA PQA + + QP + A QP Q Sbjct: 100 QPRPAAPPQPQAPMQQPVQQPVQPAPQPQQ 129
>ZIPA_SALTI (P0A2N7) Cell division protein zipA homolog| Length = 328 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = +2 Query: 32 QPSDAAHDPPQARLSSSMDQPSEAAHQPPQ 121 QP AA PQA + + QP + A QP Q Sbjct: 100 QPRPAAPPQPQAPMQQPVQQPVQPAPQPQQ 129
>IC1_MOUSE (P97290) Plasma protease C1 inhibitor precursor (C1 Inh) (C1Inh)| Length = 504 Score = 27.3 bits (59), Expect = 9.0 Identities = 19/64 (29%), Positives = 28/64 (43%) Frame = +2 Query: 20 PSMDQPSDAAHDPPQARLSSSMDQPSEAAHQPPQSLTELLLSFSVIPSIDPIPCSRHEDQ 199 P+ P+D+ PP +S QPS A+ P Q+ TE P P ++ D Sbjct: 92 PAAQLPTDSPGQPPL----NSSSQPSTASDLPTQATTE---------PFCPEPLAQCSDS 138 Query: 200 EEDS 211 + DS Sbjct: 139 DRDS 142
>BC11B_MOUSE (Q99PV8) B-cell lymphoma/leukemia 11B (B-cell CLL/lymphoma 11B)| (Radiation-induced tumor suppressor gene 1 protein) (mRit1) (COUP-TF-interacting protein 2) Length = 884 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/39 (30%), Positives = 20/39 (51%) Frame = +2 Query: 65 ARLSSSMDQPSEAAHQPPQSLTELLLSFSVIPSIDPIPC 181 A+L S + ++H P +T L + V+P P+PC Sbjct: 147 AQLPSMAPIAASSSHPPTSVITSPLRALGVLPPCFPLPC 185
>GUNC_CELFI (P14090) Endoglucanase C precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase C) (Cellulase C) Length = 1101 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/40 (32%), Positives = 20/40 (50%) Frame = -1 Query: 181 TGDWIYAWDHGEAEKELGERLGWLMGGFRRLVHGGREPSL 62 +G W A DHG+ G +G L+ + R +H G +L Sbjct: 498 SGGWYDAGDHGKYVVNGGIAVGQLLQTYERALHAGTADAL 537 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,210,486 Number of Sequences: 219361 Number of extensions: 1220404 Number of successful extensions: 4542 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 4294 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4537 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 1370455656 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
