Clone Name | bastl12f03 |
---|---|
Clone Library Name | barley_pub |
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds Length = 2910 Score = 628 bits (317), Expect = e-177 Identities = 369/381 (96%), Gaps = 4/381 (1%) Strand = Plus / Plus Query: 2 tcacacagcagcaccacagcgagctaacttagcaagcgcgccacactccccagagatcga 61 |||||||||| |||| |||||||||||||||| ||||| ||||||||||| ||||||||| Sbjct: 2 tcacacagca-caccgcagcgagctaacttag-aagcgtgccacactccc-agagatcga 58 Query: 62 gcgaagatgtttggcgtcggcggcatcgtgagcgacctgacggggggcctccggggcgcc 121 || |||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct: 59 gc-aagatgcttggcgtcggcggcatcgtgagcgacttgacggggggcatccggggcgcc 117 Query: 122 cacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggc 181 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 118 cacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggc 177 Query: 182 gccaccgtcatggacggcgtcaccgagctccccggccgcggcgtcacctgccagctcatc 241 ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct: 178 gcccacgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatc 237 Query: 242 agctccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggcgaac 301 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 238 agctccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggcgaac 297 Query: 302 ctggagcagtggctcctgccgacgaacctgccgttcatcaccaccggcgagaacaagttc 361 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 298 ctggagcagtggctcctgccgacgaacctgccgttcatcaccaccggcgagaacaagttc 357 Query: 362 gccgtcaccttcgactggtcg 382 ||||||||||||||||||||| Sbjct: 358 gccgtcaccttcgactggtcg 378
>ref|XM_469655.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2613 Score = 194 bits (98), Expect = 1e-46 Identities = 173/198 (87%) Strand = Plus / Plus Query: 118 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 177 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 42 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 101 Query: 178 cggcgccaccgtcatggacggcgtcaccgagctccccggccgcggcgtcacctgccagct 237 ||||||||||||||| |||||| || ||||| ||| |||||||||||||||||||||||| Sbjct: 102 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcgtcacctgccagct 161 Query: 238 catcagctccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggc 297 | |||||||| || |||||||| |||||| || | |||| |||||| ||||||| Sbjct: 162 cgtcagctcctccctcgtcgaccccaacaatgggaacagggggagggtggggacggaggc 221 Query: 298 gaacctggagcagtggct 315 || ||||||||||||||| Sbjct: 222 gagcctggagcagtggct 239
>dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E17, full insert sequence Length = 2928 Score = 194 bits (98), Expect = 1e-46 Identities = 173/198 (87%) Strand = Plus / Plus Query: 118 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 177 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 157 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 216 Query: 178 cggcgccaccgtcatggacggcgtcaccgagctccccggccgcggcgtcacctgccagct 237 ||||||||||||||| |||||| || ||||| ||| |||||||||||||||||||||||| Sbjct: 217 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcgtcacctgccagct 276 Query: 238 catcagctccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggc 297 | |||||||| || |||||||| |||||| || | |||| |||||| ||||||| Sbjct: 277 cgtcagctcctccctcgtcgaccccaacaatgggaacagggggagggtggggacggaggc 336 Query: 298 gaacctggagcagtggct 315 || ||||||||||||||| Sbjct: 337 gagcctggagcagtggct 354
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 180 bits (91), Expect = 2e-42 Identities = 130/143 (90%) Strand = Plus / Plus Query: 118 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 177 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 30023301 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 30023360 Query: 178 cggcgccaccgtcatggacggcgtcaccgagctccccggccgcggcgtcacctgccagct 237 ||||||||||||||| |||||| || ||||| ||| |||||||||||||||||||||||| Sbjct: 30023361 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcgtcacctgccagct 30023420 Query: 238 catcagctccaccaacgtcgacc 260 | |||||||| || |||||||| Sbjct: 30023421 cgtcagctcctccctcgtcgacc 30023443 Score = 127 bits (64), Expect = 3e-26 Identities = 118/136 (86%) Strand = Plus / Plus Query: 125 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 184 ||||||||| | || || |||||||||||||||| |||||| ||||||||||||||||| Sbjct: 27798757 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 27798816 Query: 185 accgtcatggacggcgtcaccgagctccccggccgcggcgtcacctgccagctcatcagc 244 |||||||| |||||| || |||| ||| |||| |||||||||||||||||||||||| Sbjct: 27798817 accgtcatcgacggcctcggcgagttcctcggcaagggcgtcacctgccagctcatcagc 27798876 Query: 245 tccaccaacgtcgacc 260 |||||| |||||||| Sbjct: 27798877 tccaccgccgtcgacc 27798892 Score = 60.0 bits (30), Expect = 5e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 278 gggaaggtgggcgcggaggcgaacctggagcagtggct 315 ||||||||||| |||||||||| ||||||||||||||| Sbjct: 27799308 gggaaggtgggggcggaggcgagcctggagcagtggct 27799345 Score = 44.1 bits (22), Expect = 0.33 Identities = 34/38 (89%) Strand = Plus / Plus Query: 278 gggaaggtgggcgcggaggcgaacctggagcagtggct 315 |||| |||||| ||||||||| ||||||||||||||| Sbjct: 30023539 gggagggtggggacggaggcgagcctggagcagtggct 30023576 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ggcgtcggcggcatcgtgag 93 |||||||||||||||||||| Sbjct: 24817033 ggcgtcggcggcatcgtgag 24817052
>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete sequence Length = 155106 Score = 180 bits (91), Expect = 2e-42 Identities = 130/143 (90%) Strand = Plus / Minus Query: 118 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 177 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 84450 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 84391 Query: 178 cggcgccaccgtcatggacggcgtcaccgagctccccggccgcggcgtcacctgccagct 237 ||||||||||||||| |||||| || ||||| ||| |||||||||||||||||||||||| Sbjct: 84390 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcgtcacctgccagct 84331 Query: 238 catcagctccaccaacgtcgacc 260 | |||||||| || |||||||| Sbjct: 84330 cgtcagctcctccctcgtcgacc 84308 Score = 44.1 bits (22), Expect = 0.33 Identities = 34/38 (89%) Strand = Plus / Minus Query: 278 gggaaggtgggcgcggaggcgaacctggagcagtggct 315 |||| |||||| ||||||||| ||||||||||||||| Sbjct: 84212 gggagggtggggacggaggcgagcctggagcagtggct 84175
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 180 bits (91), Expect = 2e-42 Identities = 130/143 (90%) Strand = Plus / Plus Query: 118 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 177 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 30114723 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 30114782 Query: 178 cggcgccaccgtcatggacggcgtcaccgagctccccggccgcggcgtcacctgccagct 237 ||||||||||||||| |||||| || ||||| ||| |||||||||||||||||||||||| Sbjct: 30114783 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcgtcacctgccagct 30114842 Query: 238 catcagctccaccaacgtcgacc 260 | |||||||| || |||||||| Sbjct: 30114843 cgtcagctcctccctcgtcgacc 30114865 Score = 127 bits (64), Expect = 3e-26 Identities = 118/136 (86%) Strand = Plus / Plus Query: 125 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 184 ||||||||| | || || |||||||||||||||| |||||| ||||||||||||||||| Sbjct: 27890081 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 27890140 Query: 185 accgtcatggacggcgtcaccgagctccccggccgcggcgtcacctgccagctcatcagc 244 |||||||| |||||| || |||| ||| |||| |||||||||||||||||||||||| Sbjct: 27890141 accgtcatcgacggcctcggcgagttcctcggcaagggcgtcacctgccagctcatcagc 27890200 Query: 245 tccaccaacgtcgacc 260 |||||| |||||||| Sbjct: 27890201 tccaccgccgtcgacc 27890216 Score = 60.0 bits (30), Expect = 5e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 278 gggaaggtgggcgcggaggcgaacctggagcagtggct 315 ||||||||||| |||||||||| ||||||||||||||| Sbjct: 27890632 gggaaggtgggggcggaggcgagcctggagcagtggct 27890669 Score = 44.1 bits (22), Expect = 0.33 Identities = 34/38 (89%) Strand = Plus / Plus Query: 278 gggaaggtgggcgcggaggcgaacctggagcagtggct 315 |||| |||||| ||||||||| ||||||||||||||| Sbjct: 30114961 gggagggtggggacggaggcgagcctggagcagtggct 30114998 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ggcgtcggcggcatcgtgag 93 |||||||||||||||||||| Sbjct: 24908356 ggcgtcggcggcatcgtgag 24908375
>emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2 Length = 2830 Score = 178 bits (90), Expect = 9e-42 Identities = 171/198 (86%) Strand = Plus / Plus Query: 118 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 177 ||||| ||||||||||||| |||||||||||||||||||||| |||||| |||||||||| Sbjct: 139 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 198 Query: 178 cggcgccaccgtcatggacggcgtcaccgagctccccggccgcggcgtcacctgccagct 237 ||||||||||||||| || || || ||||| ||| |||||||||||||||||||||||| Sbjct: 199 cggcgccaccgtcatcgagcgcatctccgagttcctcggccgcggcgtcacctgccagct 258 Query: 238 catcagctccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggc 297 | |||||||| || |||||||| |||||| || | |||| |||||| ||||||| Sbjct: 259 cgtcagctcctccctcgtcgaccccaacaatgggaacagggggagggtggggacggaggc 318 Query: 298 gaacctggagcagtggct 315 || ||||||||||||||| Sbjct: 319 gagcctggagcagtggct 336
>gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds Length = 2818 Score = 168 bits (85), Expect = 8e-39 Identities = 163/189 (86%) Strand = Plus / Plus Query: 125 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 184 ||||||||| | || || |||||||||||||||| ||| ||| ||||||||||||||||| Sbjct: 123 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 182 Query: 185 accgtcatggacggcgtcaccgagctccccggccgcggcgtcacctgccagctcatcagc 244 ||| |||| |||||| || |||| ||| |||| ||||||||||||||||| |||||| Sbjct: 183 accatcatcgacggcatcggcgagttcctcggcaagggcgtcacctgccagcttatcagc 242 Query: 245 tccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggcgaacctg 304 |||||| ||||||||| ||||||| || |||||||||||||||||||||||| | ||| Sbjct: 243 tccaccgccgtcgaccaagacaacggcggtcgcgggaaggtgggcgcggaggcggagctg 302 Query: 305 gagcagtgg 313 ||||||||| Sbjct: 303 gagcagtgg 311
>ref|XM_469409.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2601 Score = 165 bits (83), Expect = 1e-37 Identities = 164/191 (85%) Strand = Plus / Plus Query: 125 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 184 ||||||||| | || || |||||||||||||||| |||||| ||||||||||||||||| Sbjct: 52 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 111 Query: 185 accgtcatggacggcgtcaccgagctccccggccgcggcgtcacctgccagctcatcagc 244 |||||||| |||||| || |||| ||| |||| |||||||||||||||||||||||| Sbjct: 112 accgtcatcgacggcctcggcgagttcctcggcaagggcgtcacctgccagctcatcagc 171 Query: 245 tccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggcgaacctg 304 |||||| |||||||| |||||||| || ||||||||||| |||||||||| |||| Sbjct: 172 tccaccgccgtcgacccaaacaacggcaaccgggggaaggtgggggcggaggcgagcctg 231 Query: 305 gagcagtggct 315 ||||||||||| Sbjct: 232 gagcagtggct 242
>gb|AF329371.1|AF329371 Zea mays lipoxygenase mRNA, complete cds Length = 2595 Score = 143 bits (72), Expect = 5e-31 Identities = 209/255 (81%), Gaps = 6/255 (2%) Strand = Plus / Plus Query: 125 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 184 ||||||||| | || || |||||||||||||||| ||| ||| ||||||||||||||||| Sbjct: 52 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 111 Query: 185 accgtcatggacggcgtcaccgagctccccggccgcggcgtcacctgccagctcatcagc 244 |||||| | ||| || ||| |||| ||| |||| || ||||||||||||||||||||| Sbjct: 112 accgtcgttgacagcatcagcgagttcctcggcaagggggtcacctgccagctcatcagc 171 Query: 245 tccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggcgaacctg 304 |||||| ||||||| ||||||||| |||||| ||| || ||||||||||||||| Sbjct: 172 tccaccctcgtcgacgccaacaacggcaaccgcgggcgggtcggggcggaggcgaacctg 231 Query: 305 gagcagtggctcctgccgacgaacctgccgttcatcaccaccggcgagaacaagttcgcc 364 ||||||||||| ||||| |||||||| | || ||||||||| |||||||| | Sbjct: 232 gagcagtggct------gacgagcctgccgtcgctgacgaccggcgagtccaagttcggc 285 Query: 365 gtcaccttcgactgg 379 ||||| ||||||||| Sbjct: 286 gtcacgttcgactgg 300
>gb|AF457968.1| Zea mays clone cho1c.pk002.j23, mRNA sequence Length = 515 Score = 143 bits (72), Expect = 5e-31 Identities = 209/255 (81%), Gaps = 6/255 (2%) Strand = Plus / Plus Query: 125 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 184 ||||||||| | || || |||||||||||||||| ||| ||| ||||||||||||||||| Sbjct: 114 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 173 Query: 185 accgtcatggacggcgtcaccgagctccccggccgcggcgtcacctgccagctcatcagc 244 |||||| | ||| || ||| |||| ||| |||| || ||||||||||||||||||||| Sbjct: 174 accgtcgttgacagcatcagcgagttcctcggcaagggggtcacctgccagctcatcagc 233 Query: 245 tccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcggaggcgaacctg 304 |||||| ||||||| ||||||||| |||||| ||| || ||||||||||||||| Sbjct: 234 tccaccctcgtcgacgccaacaacggcaaccgcgggcgggtcggggcggaggcgaacctg 293 Query: 305 gagcagtggctcctgccgacgaacctgccgttcatcaccaccggcgagaacaagttcgcc 364 ||||||||||| ||||| |||||||| | || ||||||||| |||||||| | Sbjct: 294 gagcagtggct------gacgagcctgccgtcgctgacgaccggcgagtccaagttcggc 347 Query: 365 gtcaccttcgactgg 379 ||||| ||||||||| Sbjct: 348 gtcacgttcgactgg 362
>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16 map S2606, complete sequence Length = 124140 Score = 127 bits (64), Expect = 3e-26 Identities = 118/136 (86%) Strand = Plus / Plus Query: 125 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 184 ||||||||| | || || |||||||||||||||| |||||| ||||||||||||||||| Sbjct: 42887 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 42946 Query: 185 accgtcatggacggcgtcaccgagctccccggccgcggcgtcacctgccagctcatcagc 244 |||||||| |||||| || |||| ||| |||| |||||||||||||||||||||||| Sbjct: 42947 accgtcatcgacggcctcggcgagttcctcggcaagggcgtcacctgccagctcatcagc 43006 Query: 245 tccaccaacgtcgacc 260 |||||| |||||||| Sbjct: 43007 tccaccgccgtcgacc 43022 Score = 60.0 bits (30), Expect = 5e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 278 gggaaggtgggcgcggaggcgaacctggagcagtggct 315 ||||||||||| |||||||||| ||||||||||||||| Sbjct: 43438 gggaaggtgggggcggaggcgagcctggagcagtggct 43475
>gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete sequence Length = 119329 Score = 127 bits (64), Expect = 3e-26 Identities = 118/136 (86%) Strand = Plus / Minus Query: 125 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 184 ||||||||| | || || |||||||||||||||| |||||| ||||||||||||||||| Sbjct: 15136 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 15077 Query: 185 accgtcatggacggcgtcaccgagctccccggccgcggcgtcacctgccagctcatcagc 244 |||||||| |||||| || |||| ||| |||| |||||||||||||||||||||||| Sbjct: 15076 accgtcatcgacggcctcggcgagttcctcggcaagggcgtcacctgccagctcatcagc 15017 Query: 245 tccaccaacgtcgacc 260 |||||| |||||||| Sbjct: 15016 tccaccgccgtcgacc 15001 Score = 60.0 bits (30), Expect = 5e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 278 gggaaggtgggcgcggaggcgaacctggagcagtggct 315 ||||||||||| |||||||||| ||||||||||||||| Sbjct: 14585 gggaaggtgggggcggaggcgagcctggagcagtggct 14548
>gb|AF271894.1|AF271894 Zea mays lipoxygenase (LOX) mRNA, complete cds Length = 2845 Score = 117 bits (59), Expect = 3e-23 Identities = 98/111 (88%) Strand = Plus / Plus Query: 205 cgagctccccggccgcggcgtcacctgccagctcatcagctccaccaacgtcgaccacaa 264 |||| ||| |||||||||||||||||||||||| |||||||||||| |||||||| || Sbjct: 153 cgagttcctcggccgcggcgtcacctgccagcttatcagctccaccgtcgtcgaccctaa 212 Query: 265 caacggtgggcgcgggaaggtgggcgcggaggcgaacctggagcagtggct 315 |||||| ||||||||| ||||||||||||||| ||||||||||||||| Sbjct: 213 caacggcaaccgcgggaagttgggcgcggaggcgagcctggagcagtggct 263 Score = 40.1 bits (20), Expect = 5.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 348 gcgagaacaagttcgccgtcaccttcgactgg 379 |||||||| ||||| |||||||||||||||| Sbjct: 290 gcgagaaccagttccgcgtcaccttcgactgg 321
>gb|AF464895.1| Oryza sativa basmati-370 lipoxygenase (Lox) gene, partial cds Length = 1160 Score = 109 bits (55), Expect = 7e-21 Identities = 88/99 (88%) Strand = Plus / Plus Query: 149 cgcaagaacgcgctcgacttcaacgacttcggcgccaccgtcatggacggcgtcaccgag 208 ||||||||||| |||||| ||||||||||||||||||||||| | | ||||| ||||| Sbjct: 1 cgcaagaacgccctcgacatcaacgacttcggcgccaccgtcctcgggcgcgtctccgag 60 Query: 209 ctccccggccgcggcgtcacctgccagctcatcagctcc 247 ||| ||||||||||||||||||||||||| |||||||| Sbjct: 61 ttcctcggccgcggcgtcacctgccagctcgtcagctcc 99
>gb|AF465643.1| Zea mays B73 lipoxygenase gene, complete cds Length = 5013 Score = 109 bits (55), Expect = 7e-21 Identities = 115/135 (85%) Strand = Plus / Plus Query: 125 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 184 ||||||||| | || || |||||||||||||||| ||| ||| ||||||||||||||||| Sbjct: 200 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 259 Query: 185 accgtcatggacggcgtcaccgagctccccggccgcggcgtcacctgccagctcatcagc 244 |||||| | ||| || ||| |||| ||| |||| || ||||||||||||||||||||| Sbjct: 260 accgtcgttgacagcatcagcgagttcctcggcaagggggtcacctgccagctcatcagc 319 Query: 245 tccaccaacgtcgac 259 |||||| ||||||| Sbjct: 320 tccaccctcgtcgac 334 Score = 54.0 bits (27), Expect = 3e-04 Identities = 74/90 (82%), Gaps = 6/90 (6%) Strand = Plus / Plus Query: 290 gcggaggcgaacctggagcagtggctcctgccgacgaacctgccgttcatcaccaccggc 349 |||||||||||||||||||||||||| ||||| |||||||| | || |||||| Sbjct: 945 gcggaggcgaacctggagcagtggct------gacgagcctgccgtcgctgacgaccggc 998 Query: 350 gagaacaagttcgccgtcaccttcgactgg 379 ||| |||||||| |||||| ||||||||| Sbjct: 999 gagtccaagttcggcgtcacgttcgactgg 1028
>gb|U83904.1|HVU83904 Hordeum vulgare lipoxygenase isoenzyme 1 (Lox:Hv1) gene, promoter region and partial cds Length = 5236 Score = 107 bits (54), Expect = 3e-20 Identities = 108/126 (85%) Strand = Plus / Plus Query: 125 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 184 ||||||||| | || || |||||||||||||||| ||| ||| ||||||||||||||||| Sbjct: 3566 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 3625 Query: 185 accgtcatggacggcgtcaccgagctccccggccgcggcgtcacctgccagctcatcagc 244 ||| |||| |||||| || |||| ||| |||| ||||||||||||||||| |||||| Sbjct: 3626 accatcatcgacggcatcggcgagttcctcggcaagggcgtcacctgccagcttatcagc 3685 Query: 245 tccacc 250 |||||| Sbjct: 3686 tccacc 3691 Score = 67.9 bits (34), Expect = 2e-08 Identities = 46/50 (92%) Strand = Plus / Plus Query: 264 acaacggtgggcgcgggaaggtgggcgcggaggcgaacctggagcagtgg 313 ||||||| || |||||||||||||||||||||||| | |||||||||||| Sbjct: 4255 acaacggcggtcgcgggaaggtgggcgcggaggcggagctggagcagtgg 4304
>gb|AF465642.1| Zea mays Golden cross bantam-70 lipoxygenase gene, promoter region and partial cds Length = 3196 Score = 71.9 bits (36), Expect = 1e-09 Identities = 63/72 (87%) Strand = Plus / Plus Query: 189 tcatggacggcgtcaccgagctccccggccgcggcgtcacctgccagctcatcagctcca 248 ||||||||||| || |||| ||| ||||||||||||||||||||| ||| ||||||||| Sbjct: 2387 tcatggacggcctcggcgagttcctcggccgcggcgtcacctgccaactcgtcagctcca 2446 Query: 249 ccaacgtcgacc 260 || |||||||| Sbjct: 2447 ccgtcgtcgacc 2458 Score = 52.0 bits (26), Expect = 0.001 Identities = 41/46 (89%) Strand = Plus / Plus Query: 275 cgcgggaaggtgggcgcggaggcgaacctggagcagtggctcctgc 320 |||||||||||||| |||||||| ||||||||||||||| |||| Sbjct: 2744 cgcgggaaggtgggtcaggaggcgagcctggagcagtggctgctgc 2789
>gb|AE005807.1| Caulobacter crescentus CB15 section 133 of 359 of the complete genome Length = 8803 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Plus Query: 157 cgcgctcgacttcaacgacttcggcg 182 ||||| |||||||||||||||||||| Sbjct: 4469 cgcgcacgacttcaacgacttcggcg 4494
>ref|NM_003028.1| Homo sapiens Src homology 2 domain containing adaptor protein B (SHB), mRNA Length = 2306 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 cggggggcctccggggcgccc 122 ||||||||||||||||||||| Sbjct: 469 cggggggcctccggggcgccc 449
>gb|AY596511.1| Helicosporidium sp. ex Simulium jonesii gamma-carbonic anhydrase mRNA, partial cds Length = 775 Score = 42.1 bits (21), Expect = 1.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 178 cggcgccaccgtcatggacggcgtcaccg 206 ||||||||| ||||||||||||| ||||| Sbjct: 400 cggcgccacggtcatggacggcgccaccg 428
>emb|X75342.1|HSSHB H.sapiens SHB mRNA Length = 2306 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 102 cggggggcctccggggcgccc 122 ||||||||||||||||||||| Sbjct: 469 cggggggcctccggggcgccc 449
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 211 ccccggccgcggcgtcacctgccag 235 |||||||||||||| |||||||||| Sbjct: 3644880 ccccggccgcggcggcacctgccag 3644904
>gb|AF357202.1| Streptomyces nodosus amphotericin biosynthetic gene cluster, complete sequence Length = 113193 Score = 40.1 bits (20), Expect = 5.1 Identities = 32/36 (88%) Strand = Plus / Plus Query: 194 gacggcgtcaccgagctccccggccgcggcgtcacc 229 |||||||||||| ||| ||||||||||||||||| Sbjct: 82347 gacggcgtcaccaccctcgccggccgcggcgtcacc 82382
>gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0088L13 map near C50029S, complete sequence Length = 129900 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ggcgtcggcggcatcgtgag 93 |||||||||||||||||||| Sbjct: 52268 ggcgtcggcggcatcgtgag 52287
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 gctcctgccgacgaacctgc 332 |||||||||||||||||||| Sbjct: 137505 gctcctgccgacgaacctgc 137486
>gb|AE016853.1| Pseudomonas syringae pv. tomato str. DC3000 complete genome Length = 6397126 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 327 acctgccgttcatcaccaccggcg 350 ||||||||||||||| |||||||| Sbjct: 288875 acctgccgttcatcatcaccggcg 288852
>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome Length = 6093698 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 327 acctgccgttcatcaccaccggcg 350 ||||||||||||||| |||||||| Sbjct: 153202 acctgccgttcatcatcaccggcg 153225
>gb|AY316746.1| Rhizobium sp. NGR234 megaplasmid 2 contig 2, complete sequence Length = 236455 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 79 cggcggcatcgtgagcgacctgac 102 ||||||||||| |||||||||||| Sbjct: 205636 cggcggcatcgagagcgacctgac 205659
>emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete chromosome; segment 9/12 Length = 323450 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 79 cggcggcatcgtgagcgacctgac 102 ||||||||||| |||||||||||| Sbjct: 80122 cggcggcatcgagagcgacctgac 80099
>gb|AC124918.5| Rattus norvegicus 4 BAC CH230-4H1 (Children's Hospital Oakland Research Institute) complete sequence Length = 228052 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 agctcatcagctccaccaac 253 |||||||||||||||||||| Sbjct: 82121 agctcatcagctccaccaac 82102
>ref|XM_967239.1| PREDICTED: Tribolium castaneum similar to CG11980-PC, isoform C (LOC661050), mRNA Length = 1156 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 caccaacgtcgaccacaaca 266 |||||||||||||||||||| Sbjct: 239 caccaacgtcgaccacaaca 220
>emb|X58825.1|SYPSAAB Synechocystis 6803 psaA and psaB genes for P700 apoprotein Ia and Ib subunits Length = 4938 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 211 ccccggccgcggcgtcacctgcca 234 |||||||||||||| ||||||||| Sbjct: 1941 ccccggccgcggcggcacctgcca 1964
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 gccgttcatcaccaccggcg 350 |||||||||||||||||||| Sbjct: 1867059 gccgttcatcaccaccggcg 1867040
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 211 ccccggccgcggcgtcacctgcca 234 |||||||||||||| ||||||||| Sbjct: 769949 ccccggccgcggcggcacctgcca 769926
>emb|AL731878.4|CNS08C8I Oryza sativa chromosome 3, . BAC OSJNBb0116P11 of library OSJNBb from chromosome 3 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 128559 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 74 ggcgtcggcggcatcgtgag 93 |||||||||||||||||||| Sbjct: 103984 ggcgtcggcggcatcgtgag 104003
>gb|AC079160.5| Homo sapiens BAC clone RP11-176K15 from 4, complete sequence Length = 147727 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 300 acctggagcagtggctcctg 319 |||||||||||||||||||| Sbjct: 78731 acctggagcagtggctcctg 78750
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 177 tcggcgccaccgtcatggacggcg 200 ||||||||| |||||||||||||| Sbjct: 2990742 tcggcgccatcgtcatggacggcg 2990719
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 74 ggcgtcggcggcatcgtgagcgac 97 |||||||||||||||||| ||||| Sbjct: 5079435 ggcgtcggcggcatcgtgcgcgac 5079412
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 198 gcgtcaccgagctccccggccgcggcgt 225 ||||||||||| || ||||||||||||| Sbjct: 1576694 gcgtcaccgagatctccggccgcggcgt 1576721
>dbj|BA000022.2| Synechocystis sp. PCC 6803 DNA, complete genome Length = 3573470 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 211 ccccggccgcggcgtcacctgcca 234 |||||||||||||| ||||||||| Sbjct: 943413 ccccggccgcggcggcacctgcca 943436
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 74 ggcgtcggcggcatcgtgagcgac 97 |||||||||||||||||| ||||| Sbjct: 590306 ggcgtcggcggcatcgtgcgcgac 590329 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 147 tgcgcaagaacgcgctcgacttca 170 ||||||||||| |||||||||||| Sbjct: 206796 tgcgcaagaacccgctcgacttca 206773
>dbj|AK109329.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-B01, full insert sequence Length = 1556 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 74 ggcgtcggcggcatcgtgag 93 |||||||||||||||||||| Sbjct: 613 ggcgtcggcggcatcgtgag 594
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 74 ggcgtcggcggcatcgtgagcgac 97 |||||||||||||||||| ||||| Sbjct: 657733 ggcgtcggcggcatcgtgcgcgac 657756 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,171,951 Number of Sequences: 3902068 Number of extensions: 2171951 Number of successful extensions: 47098 Number of sequences better than 10.0: 44 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45821 Number of HSP's gapped (non-prelim): 1270 length of query: 382 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 360 effective length of database: 17,147,199,772 effective search space: 6172991917920 effective search space used: 6172991917920 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)