>ref|XM_515369.1| PREDICTED: Pan troglodytes LOC459112 (LOC459112), mRNA
          Length = 2067

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 78   cacatcagcagcagagtgagt 98
            |||||||||||||||||||||
Sbjct: 1883 cacatcagcagcagagtgagt 1863

>gb|BC001251.1| Homo sapiens brain and reproductive organ-expressed (TNFRSF1A
           modulator), transcript variant 3, mRNA (cDNA clone
           MGC:4974 IMAGE:3456561), complete cds
          Length = 1577

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 78  cacatcagcagcagagtgagt 98
           |||||||||||||||||||||
Sbjct: 930 cacatcagcagcagagtgagt 910

>ref|XM_532918.2| PREDICTED: Canis familiaris similar to brain and reproductive
           organ-expressed protein, transcript variant 1
           (LOC475711), mRNA
          Length = 1442

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 78  cacatcagcagcagagtgagt 98
           |||||||||||||||||||||
Sbjct: 959 cacatcagcagcagagtgagt 939

>ref|XM_845588.1| PREDICTED: Canis familiaris similar to brain and reproductive
            organ-expressed protein, transcript variant 2
            (LOC475711), mRNA
          Length = 1548

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 78   cacatcagcagcagagtgagt 98
            |||||||||||||||||||||
Sbjct: 1065 cacatcagcagcagagtgagt 1045

>gb|AY438031.1| Homo sapiens BRCA1/BRCA2-containing complex subunit 45 (BRE) mRNA,
           complete cds
          Length = 1152

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 78  cacatcagcagcagagtgagt 98
           |||||||||||||||||||||
Sbjct: 908 cacatcagcagcagagtgagt 888

>emb|CR857384.1| Pongo pygmaeus mRNA; cDNA DKFZp469C1732 (from clone DKFZp469C1732)
          Length = 1649

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 78   cacatcagcagcagagtgagt 98
            |||||||||||||||||||||
Sbjct: 1005 cacatcagcagcagagtgagt 985

>dbj|AK123076.1| Homo sapiens cDNA FLJ41081 fis, clone ADRGL2009755, highly  similar
            to Homo sapiens brain and reproductive organ-expressed
            protein (BRE) mRNA
          Length = 1650

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 78   cacatcagcagcagagtgagt 98
            |||||||||||||||||||||
Sbjct: 1021 cacatcagcagcagagtgagt 1001

>emb|CR594132.1| full-length cDNA clone CS0DK012YO24 of HeLa cells Cot 25-normalized
           of Homo sapiens (human)
          Length = 840

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 78  cacatcagcagcagagtgagt 98
           |||||||||||||||||||||
Sbjct: 228 cacatcagcagcagagtgagt 208

>gb|AC093690.5| Homo sapiens BAC clone RP11-731I19 from 2, complete sequence
          Length = 201467

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 78     cacatcagcagcagagtgagt 98
              |||||||||||||||||||||
Sbjct: 106218 cacatcagcagcagagtgagt 106198

>gb|AF420605.1|AF420605 Homo sapiens BRE alpha a' isoform (BRE) mRNA, complete cds;
           alternatively spliced
          Length = 1401

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 78  cacatcagcagcagagtgagt 98
           |||||||||||||||||||||
Sbjct: 982 cacatcagcagcagagtgagt 962

>gb|AF420604.1|AF420604 Homo sapiens truncated BRE alpha a3+ isoform (BRE) mRNA, complete
           cds; alternatively spliced
          Length = 1438

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 78  cacatcagcagcagagtgagt 98
           |||||||||||||||||||||
Sbjct: 991 cacatcagcagcagagtgagt 971

>gb|AF420603.1|AF420603 Homo sapiens upstream ORF and BRE beta b isoform (BRE) mRNAs,
            complete cds; alternatively spliced
          Length = 1567

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 78   cacatcagcagcagagtgagt 98
            |||||||||||||||||||||
Sbjct: 1048 cacatcagcagcagagtgagt 1028

>gb|AF420602.1|AF420602 Homo sapiens BRE alpha b isoform (BRE) mRNA, complete cds;
           alternatively spliced
          Length = 1501

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 78  cacatcagcagcagagtgagt 98
           |||||||||||||||||||||
Sbjct: 982 cacatcagcagcagagtgagt 962

>gb|AF440753.1|AF440753 Saguinus oedipus brain and reproductive organ-expressed protein
           (BRE) mRNA, complete cds
          Length = 1434

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 78  cacatcagcagcagagtgagt 98
           |||||||||||||||||||||
Sbjct: 988 cacatcagcagcagagtgagt 968

>gb|U19178.1|HSU19178 Human (Hin-3)/HIV1 promoter region chimeric mRNA, complete cds
          Length = 1654

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 78  cacatcagcagcagagtgagt 98
           |||||||||||||||||||||
Sbjct: 850 cacatcagcagcagagtgagt 830

>dbj|AK000097.1| Homo sapiens cDNA FLJ20090 fis, clone COL04151
          Length = 1865

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 78   cacatcagcagcagagtgagt 98
            |||||||||||||||||||||
Sbjct: 1046 cacatcagcagcagagtgagt 1026

>gb|AY893668.1| Synthetic construct Homo sapiens clone FLH057915.01L brain and
           reproductive organ-expressed (BRE) mRNA, partial cds
          Length = 1152

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 78  cacatcagcagcagagtgagt 98
           |||||||||||||||||||||
Sbjct: 908 cacatcagcagcagagtgagt 888

>gb|AF015767.1|AF015767 Homo sapiens brain and reproductive organ-expressed protein (BRE)
            mRNA, complete cds
          Length = 1664

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 78   cacatcagcagcagagtgagt 98
            |||||||||||||||||||||
Sbjct: 1035 cacatcagcagcagagtgagt 1015

>gb|L38616.1|HUMBRE Homo sapiens brain and reproductive organ-expressed protein (BRE)
            gene, complete cds
          Length = 1683

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 78   cacatcagcagcagagtgagt 98
            |||||||||||||||||||||
Sbjct: 1054 cacatcagcagcagagtgagt 1034

>ref|NM_199194.1| Homo sapiens brain and reproductive organ-expressed (TNFRSF1A
            modulator) (BRE), transcript variant 2, mRNA
          Length = 1860

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 78   cacatcagcagcagagtgagt 98
            |||||||||||||||||||||
Sbjct: 1226 cacatcagcagcagagtgagt 1206

>ref|NM_199193.1| Homo sapiens brain and reproductive organ-expressed (TNFRSF1A
            modulator) (BRE), transcript variant 4, mRNA
          Length = 1932

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 78   cacatcagcagcagagtgagt 98
            |||||||||||||||||||||
Sbjct: 1226 cacatcagcagcagagtgagt 1206

>ref|NM_004899.3| Homo sapiens brain and reproductive organ-expressed (TNFRSF1A
            modulator) (BRE), transcript variant 1, mRNA
          Length = 1893

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 78   cacatcagcagcagagtgagt 98
            |||||||||||||||||||||
Sbjct: 1085 cacatcagcagcagagtgagt 1065

>ref|NM_199192.1| Homo sapiens brain and reproductive organ-expressed (TNFRSF1A
            modulator) (BRE), transcript variant 5, mRNA
          Length = 1791

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 78   cacatcagcagcagagtgagt 98
            |||||||||||||||||||||
Sbjct: 1085 cacatcagcagcagagtgagt 1065

>ref|NM_199191.1| Homo sapiens brain and reproductive organ-expressed (TNFRSF1A
            modulator) (BRE), transcript variant 3, mRNA
          Length = 1720

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 78   cacatcagcagcagagtgagt 98
            |||||||||||||||||||||
Sbjct: 1085 cacatcagcagcagagtgagt 1065

>ref|XM_584555.2| PREDICTED: Bos taurus similar to translocated promoter region
            protein, transcript variant 1 (LOC507869), mRNA
          Length = 7235

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 42   cccaccacacccacttcccc 61
            ||||||||||||||||||||
Sbjct: 6222 cccaccacacccacttcccc 6241

>ref|XM_875047.1| PREDICTED: Bos taurus similar to translocated promoter region
           protein, transcript variant 3 (LOC507869), mRNA
          Length = 1148

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 42  cccaccacacccacttcccc 61
           ||||||||||||||||||||
Sbjct: 141 cccaccacacccacttcccc 160

>ref|XM_751855.1| Ustilago maydis 521 hypothetical protein (UM00801.1) partial mRNA
          Length = 5760

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 330  gcgagacacatcatggcgga 349
            ||||||||||||||||||||
Sbjct: 5447 gcgagacacatcatggcgga 5466

>emb|AL442125.13| Human DNA sequence from clone RP11-230F18 on chromosome 13 Contains
            the 5' end of the gene for FLJ10704 (FLJ20092), a  novel
            gene, a novel gene (FLJ20623), the TFDP1 gene for
            transcription factor Dp-1 (DP-1, DRTF1) and 5 CpG
            islands, complete sequence
          Length = 184889

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 30   accagccgcgaccccaccac 49
            ||||||||||||||||||||
Sbjct: 8054 accagccgcgaccccaccac 8073

>emb|AL121879.14|HSDJ961O8 Human DNA sequence from clone RP5-961O8 on chromosome Xq23-24, complete
             sequence
          Length = 104695

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    acagcacatcagcagcagag 93
             ||||||||||||||||||||
Sbjct: 50105 acagcacatcagcagcagag 50086

>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29
          Length = 339650

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 206    cgccccggcgaccgcgtcag 225
              ||||||||||||||||||||
Sbjct: 276743 cgccccggcgaccgcgtcag 276724

>gb|AF436128.1| Human papillomavirus type 91, complete genome
          Length = 8078

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 40   accccaccacacccacttcc 59
            ||||||||||||||||||||
Sbjct: 3294 accccaccacacccacttcc 3313

>dbj|AB229950.1| Aspergillus oryzae cDNA, contig sequence: AoEST6836
          Length = 543

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 295 gaaagaagtaagagggggag 314
           ||||||||||||||||||||
Sbjct: 54  gaaagaagtaagagggggag 35

>dbj|AP007157.1| Aspergillus oryzae RIB40 genomic DNA, SC023
          Length = 2661830

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 295     gaaagaagtaagagggggag 314
               ||||||||||||||||||||
Sbjct: 2089453 gaaagaagtaagagggggag 2089472

>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 134     tgcgcacgtgctcgccggag 153
               ||||||||||||||||||||
Sbjct: 4961445 tgcgcacgtgctcgccggag 4961464

>gb|AC139299.3| Mus musculus BAC clone RP23-335D20 from 1, complete sequence
          Length = 204848

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 79     acatcagcagcagagtgagtagat 102
              ||||| ||||||||||||||||||
Sbjct: 204579 acatctgcagcagagtgagtagat 204556

>gb|AC160762.4| Mus musculus BAC clone RP24-330E8 from chromosome 1, complete sequence
          Length = 149232

 Score = 40.1 bits (20), Expect = 5.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 79    acatcagcagcagagtgagtagat 102
             ||||| ||||||||||||||||||
Sbjct: 54536 acatctgcagcagagtgagtagat 54513


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,652,357
Number of Sequences: 3902068
Number of extensions: 2652357
Number of successful extensions: 58629
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58505
Number of HSP's gapped (non-prelim): 124
length of query: 380
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 358
effective length of database: 17,147,199,772
effective search space: 6138697518376
effective search space used: 6138697518376
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)