ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl12e11 |
|---|---|
| Clone Library Name | barley_pub |
>MCRA_STRLA (P43485) Mitomycin radical oxidase (EC 1.5.3.-)| Length = 447 Score = 31.6 bits (70), Expect = 0.54 Identities = 15/33 (45%), Positives = 20/33 (60%) Frame = -2 Query: 286 GCSVAAPPAPRGVEAGGKWRRCLEAGVLNGVAP 188 G SV A A +EAG +WR+ LE +G+AP Sbjct: 82 GVSVDAARATAWIEAGARWRKVLEHTAPHGLAP 114
>HRG_BOVIN (P33433) Histidine-rich glycoprotein (Histidine-proline-rich| glycoprotein) (HPRG) (Fragments) Length = 396 Score = 31.2 bits (69), Expect = 0.70 Identities = 14/40 (35%), Positives = 17/40 (42%) Frame = +1 Query: 4 GHQSRGFAPPDSASHHPDPATQPDSRPPPGTLDRTDPCQG 123 GH G PPD+ + P P RPPP P +G Sbjct: 278 GHHPHGHHPPDNDFYDHGPCDPPPHRPPPRHSKERGPGKG 317
>SF01_MOUSE (Q64213) Splicing factor 1 (Zinc finger protein 162) (Transcription| factor ZFM1) (mZFM) (Zinc finger gene in MEN1 locus) (Mammalian branch point-binding protein mBBP) (BBP) (CW17) Length = 653 Score = 30.0 bits (66), Expect = 1.6 Identities = 11/28 (39%), Positives = 13/28 (46%) Frame = +1 Query: 7 HQSRGFAPPDSASHHPDPATQPDSRPPP 90 HQ +G PP P P P +PPP Sbjct: 464 HQGKGMMPPPPMGMMPPPPPPPSGQPPP 491
>SF01_HUMAN (Q15637) Splicing factor 1 (Zinc finger protein 162) (Transcription| factor ZFM1) (Zinc finger gene in MEN1 locus) (Mammalian branch point-binding protein mBBP) (BBP) Length = 639 Score = 30.0 bits (66), Expect = 1.6 Identities = 11/28 (39%), Positives = 13/28 (46%) Frame = +1 Query: 7 HQSRGFAPPDSASHHPDPATQPDSRPPP 90 HQ +G PP P P P +PPP Sbjct: 464 HQGKGMMPPPPMGMMPPPPPPPSGQPPP 491
>PO3F2_HUMAN (P20265) POU domain, class 3, transcription factor 2 (Nervous| system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2) Length = 443 Score = 29.6 bits (65), Expect = 2.0 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = +1 Query: 31 PDSASHHPDPATQPDSRPPP 90 P A HHP P + P +PPP Sbjct: 222 PHHADHHPHPHSHPHQQPPP 241
>PO3F2_RAT (P56222) POU domain, class 3, transcription factor 2 (Nervous| system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2) Length = 445 Score = 29.6 bits (65), Expect = 2.0 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = +1 Query: 31 PDSASHHPDPATQPDSRPPP 90 P A HHP P + P +PPP Sbjct: 224 PHHADHHPHPHSHPHQQPPP 243
>PO3F2_MOUSE (P31360) POU domain, class 3, transcription factor 2 (Nervous| system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2) Length = 445 Score = 29.6 bits (65), Expect = 2.0 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = +1 Query: 31 PDSASHHPDPATQPDSRPPP 90 P A HHP P + P +PPP Sbjct: 224 PHHADHHPHPHSHPHQQPPP 243
>PKWA_THECU (P49695) Probable serine/threonine-protein kinase pkwA (EC| 2.7.11.1) Length = 742 Score = 29.3 bits (64), Expect = 2.7 Identities = 13/24 (54%), Positives = 14/24 (58%) Frame = +3 Query: 48 PPRSGDPARFATAPGNPRSDRPLP 119 PPR +PAR A P NPR P P Sbjct: 361 PPRPREPARGAIKPKNPRPAAPQP 384
>SCNNB_CANFA (Q95165) Amiloride-sensitive sodium channel beta-subunit| (Epithelial Na+ channel beta subunit) (Beta ENaC) (Nonvoltage-gated sodium channel 1 beta subunit) (SCNEB) (Beta NaCH) (Fragment) Length = 88 Score = 28.9 bits (63), Expect = 3.5 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%) Frame = +1 Query: 1 DGHQSRGFAPPDSASHHPDPATQPDSR--PPPGT 96 + H + GF P D A PDP T PD + P PGT Sbjct: 54 EAHTNFGFQP-DVARPGPDPGTYPDEQTLPIPGT 86
>PP1RA_PIG (Q767K9) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (MHC class I region proline-rich protein CAT53) (Protein FB19) Length = 925 Score = 28.9 bits (63), Expect = 3.5 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = +3 Query: 45 PPPRSGDPARFATAPGNPRSDRPLPG 122 PPPR GDP F PG+P P+ G Sbjct: 674 PPPRGGDP--FWDGPGDPMRGGPMRG 697
>PRB4S_HUMAN (P10163) Basic salivary proline-rich protein 4 allele S precursor| (Salivary proline-rich protein Po) (Parotid o protein) [Contains: Protein N1; Glycosylated protein A] Length = 247 Score = 28.9 bits (63), Expect = 3.5 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 3/43 (6%) Frame = +1 Query: 4 GHQSRGFAPPDSASHHPDPATQPDSR---PPPGTLDRTDPCQG 123 G+QS+G PP P P S PPPG +R P G Sbjct: 107 GNQSQGTPPPPGKPERPPPQGGNQSHRPPPPPGKPERPPPQGG 149
>PP1RA_PANTR (Q7YR38) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (MHC class I region proline-rich protein CAT53) (Protein FB19) Length = 940 Score = 28.9 bits (63), Expect = 3.5 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = +3 Query: 45 PPPRSGDPARFATAPGNPRSDRPLPG 122 PPPR GDP F PG+P P+ G Sbjct: 671 PPPRGGDP--FWDGPGDPMRGGPMRG 694
>PP1RA_MACMU (Q5TM61) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (MHC class I region proline-rich protein CAT53) Length = 940 Score = 28.9 bits (63), Expect = 3.5 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = +3 Query: 45 PPPRSGDPARFATAPGNPRSDRPLPG 122 PPPR GDP F PG+P P+ G Sbjct: 671 PPPRGGDP--FWDGPGDPMRGGPMRG 694
>PP1RA_HUMAN (Q96QC0) Serine/threonine-protein phosphatase 1 regulatory subunit| 10 (Phosphatase 1 nuclear targeting subunit) (MHC class I region proline-rich protein CAT53) (FB19 protein) (PP1-binding protein of 114 kDa) (p99) Length = 940 Score = 28.9 bits (63), Expect = 3.5 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = +3 Query: 45 PPPRSGDPARFATAPGNPRSDRPLPG 122 PPPR GDP F PG+P P+ G Sbjct: 671 PPPRGGDP--FWDGPGDPMRGGPMRG 694
>RGDSR_HUMAN (Q8IZJ4) Ral-GDS-related protein (hRGR)| Length = 473 Score = 28.5 bits (62), Expect = 4.5 Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 7/39 (17%) Frame = +1 Query: 28 PPDSASHHPDPATQPDSRPPPGTL-------DRTDPCQG 123 PP P PA P PPPGT+ + + PC+G Sbjct: 164 PPGYLHSAPGPAPAPGEGPPPGTVLEPQSAPESSCPCRG 202
>NID2_HUMAN (Q14112) Nidogen-2 precursor (NID-2) (Osteonidogen)| Length = 1375 Score = 28.5 bits (62), Expect = 4.5 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%) Frame = +1 Query: 1 DGHQSRGF-APPDSASHHPDPATQPDSRPP 87 DGH+ G PP S H P+ +P RPP Sbjct: 987 DGHEVPGTQTPPGSTPPHCGPSPEPTQRPP 1016
>BRM_DROME (P25439) Homeotic gene regulator (EC 3.6.1.-) (ATP-dependent| helicase brm) (Protein brahma) Length = 1638 Score = 28.5 bits (62), Expect = 4.5 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +3 Query: 39 RQPPPRSGDPARFATAPGNPRSDRPLPG 122 +QPPP +G P + +T P + P+PG Sbjct: 246 QQPPPSAGTPPQCSTPPASNPYGPPVPG 273
>TBCD3_HUMAN (Q8IZP1) TBC1 domain family member 3 (Rab GTPase-activating protein| PRC17) (Prostate cancer gene 17 protein) (TRE17 alpha protein) Length = 549 Score = 28.5 bits (62), Expect = 4.5 Identities = 18/36 (50%), Positives = 19/36 (52%), Gaps = 6/36 (16%) Frame = +3 Query: 39 RQPPPRSGDPARF------ATAPGNPRSDRPLPGMA 128 RQ PP G PARF A+ P PRS P PG A Sbjct: 387 RQAPP--GPPARFPRPIWSASPPRAPRSSTPCPGGA 420
>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22| Length = 1010 Score = 28.5 bits (62), Expect = 4.5 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = +3 Query: 36 LRQPPPRSGDPARFATAPGNPRSDRPLP 119 +R P PR G PAR +PR+ P P Sbjct: 98 VRSPSPRQGSPARRVDRSSSPRARSPPP 125
>TMPS9_HUMAN (Q7Z410) Transmembrane protease, serine 9 (EC 3.4.21.-)| (Polyserase-1) (Polyserase-I) (Polyserine protease 1) [Contains: Serase-1; Serase-2; Serase-3] Length = 1059 Score = 28.1 bits (61), Expect = 5.9 Identities = 23/71 (32%), Positives = 26/71 (36%), Gaps = 6/71 (8%) Frame = +3 Query: 81 TAPGNPRSDRPLPGMAXXXXXXXXXXXXXXXQATAGGATPF-RTPASKHRLHFP-----P 242 T PG S RP PG A TA G TPF P + P P Sbjct: 763 TVPGATPS-RPTPGAASRVTGQPANSTLSAVSTTARGQTPFPDAPEATTHTQLPDCGLAP 821 Query: 243 ASTPRGAGGAA 275 A+ R GG+A Sbjct: 822 AALTRIVGGSA 832
>KIF1C_HUMAN (O43896) Kinesin-like protein KIF1C| Length = 1103 Score = 27.7 bits (60), Expect = 7.7 Identities = 28/92 (30%), Positives = 34/92 (36%), Gaps = 10/92 (10%) Frame = +3 Query: 36 LRQPPPRSGDP----ARFATAPGNPRSDRPLPGMAXXXXXXXXXXXXXXXQATAGGATPF 203 +R+PP R P RF NP+ PGM + T ATP Sbjct: 962 VRRPPARFVPPHDCNVRFPFK-SNPQHRESWPGMGSGEAPTPLQPPE---EVTPHPATPA 1017 Query: 204 RTPASKHRLHFPPAST------PRGAGGAATE 281 R P S R H P ++ RGAG A E Sbjct: 1018 RRPPSPRRSHHPRRNSLDGGGRSRGAGSAQPE 1049
>ATX2_MOUSE (O70305) Ataxin-2 (Spinocerebellar ataxia type 2 protein homolog)| Length = 1285 Score = 27.7 bits (60), Expect = 7.7 Identities = 13/28 (46%), Positives = 15/28 (53%) Frame = +3 Query: 18 RICASRLRQPPPRSGDPARFATAPGNPR 101 R C +R PPRSG + APG PR Sbjct: 112 RACPPGVRASPPRSGVSSSARPAPGCPR 139
>Y301_ENCCU (Q8SW85) Hypothetical protein ECU03_0010| Length = 276 Score = 27.7 bits (60), Expect = 7.7 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = +3 Query: 9 PITRICASRLRQPPPRSGDPARFATAPGNPRSDRPLPG 122 P R ++RLR PPR+ + F P + RP PG Sbjct: 48 PDFRSKSARLRCQPPRTNNCGTFKQPPSVAATSRPKPG 85
>PO6F2_HUMAN (P78424) POU domain, class 6, transcription factor 2| (Retina-derived POU-domain factor 1) (RPF-1) Length = 684 Score = 27.7 bits (60), Expect = 7.7 Identities = 13/31 (41%), Positives = 15/31 (48%) Frame = +1 Query: 28 PPDSASHHPDPATQPDSRPPPGTLDRTDPCQ 120 PP S + HP PA Q S+ L T P Q Sbjct: 190 PPPSTNQHPQPAPQAPSQSQQQPLQPTPPQQ 220
>TEGU_HHV11 (P10220) Large tegument protein (Virion protein UL36)| Length = 3164 Score = 27.7 bits (60), Expect = 7.7 Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 5/28 (17%) Frame = +3 Query: 45 PPPRSGDPARFAT-----APGNPRSDRP 113 PPP SG P + T APG P S RP Sbjct: 2857 PPPTSGPPPTYLTLEGGVAPGGPVSRRP 2884
>PO6F2_MOUSE (Q8BJI4) POU domain, class 6, transcription factor 2| Length = 691 Score = 27.7 bits (60), Expect = 7.7 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%) Frame = +1 Query: 28 PPDSASHHPDPATQ--PDSRPPP 90 PP S HP PA+Q P S+P P Sbjct: 200 PPPPTSQHPQPASQAPPQSQPTP 222
>Y503_ENCCU (Q8ST70) Hypothetical protein ECU05_0030/ECU10_1870| Length = 489 Score = 27.7 bits (60), Expect = 7.7 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = +3 Query: 9 PITRICASRLRQPPPRSGDPARFATAPGNPRSDRPLPG 122 P R ++RLR PPR+ + F P + RP PG Sbjct: 48 PDFRSKSARLRCQPPRTNNCGTFKQPPSVAATSRPKPG 85
>Y105_ENCCU (Q8STH9) Hypothetical protein ECU01_0050/ECU01_1560/ECU07_0010| Length = 238 Score = 27.7 bits (60), Expect = 7.7 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = +3 Query: 9 PITRICASRLRQPPPRSGDPARFATAPGNPRSDRPLPG 122 P R ++RLR PPR+ + F P + RP PG Sbjct: 48 PDFRSKSARLRCQPPRTNNCGTFKQPPSVAATSRPKPG 85
>LTBP4_MOUSE (Q8K4G1) Latent transforming growth factor beta-binding protein 4| precursor (LTBP-4) Length = 1666 Score = 27.7 bits (60), Expect = 7.7 Identities = 11/24 (45%), Positives = 12/24 (50%) Frame = +1 Query: 19 GFAPPDSASHHPDPATQPDSRPPP 90 GF P PDP QP+ RP P Sbjct: 502 GFLPTRRPEPRPDPGPQPEPRPRP 525
>V70K_TYMVA (P20131) 69 kDa protein| Length = 628 Score = 27.7 bits (60), Expect = 7.7 Identities = 13/27 (48%), Positives = 13/27 (48%) Frame = +3 Query: 39 RQPPPRSGDPARFATAPGNPRSDRPLP 119 RQPPP S DP P P S R P Sbjct: 229 RQPPPLSDDPGILGPCPLAPNSTRDPP 255
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 27.7 bits (60), Expect = 7.7 Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 1/31 (3%) Frame = +3 Query: 39 RQPPPRSGDPARFATAPGNP-RSDRPLPGMA 128 R PPPRSG P +AP P RS + G A Sbjct: 151 RGPPPRSGGPPPKRSAPSGPVRSSSGMGGRA 181 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.312 0.136 0.476 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 31,965,823 Number of Sequences: 219361 Number of extensions: 591439 Number of successful extensions: 3496 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 2688 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3436 length of database: 80,573,946 effective HSP length: 75 effective length of database: 64,121,871 effective search space used: 1538924904 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits)
