ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl12e11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_468330.1| Oryza sativa (japonica cultivar-group), mRNA 62 1e-06
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
3dbj|AP004081.3| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
4dbj|AP003996.3| Oryza sativa (japonica cultivar-group) genomic D... 62 1e-06
5gb|AC135643.2| Oryza sativa (japonica cultivar-group) chromosome... 44 0.25
6emb|AL731626.4|OSJN00271 Oryza sativa genomic DNA, chromosome 4,... 44 0.25
7emb|AL662969.3|OSJN00169 Oryza sativa genomic DNA, chromosome 4,... 44 0.25
8dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.25
9dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.25
10dbj|AK067306.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.25
11gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 44 0.25
12gb|DQ429871.1| Sorghum propinquum locus pSB1459 genomic sequence 42 0.99
13gb|DQ429870.1| Sorghum bicolor voucher PI585454 locus pSB1459 ge... 42 0.99
14gb|DQ429869.1| Sorghum bicolor voucher PI267539 locus pSB1459 ge... 42 0.99
15gb|DQ429868.1| Sorghum bicolor voucher PI267408 locus pSB1459 ge... 42 0.99
16gb|DQ429867.1| Sorghum bicolor voucher PI221607 locus pSB1459 ge... 42 0.99
17gb|DQ429866.1| Sorghum bicolor voucher PI152702 locus pSB1459 ge... 42 0.99
18gb|DQ429865.1| Sorghum bicolor voucher NSL92371 locus pSB1459 ge... 42 0.99
19gb|DQ429864.1| Sorghum bicolor voucher NSL87902 locus pSB1459 ge... 42 0.99
20gb|DQ429863.1| Sorghum bicolor voucher NSL87666 locus pSB1459 ge... 42 0.99
21gb|DQ429862.1| Sorghum bicolor voucher NSL77217 locus pSB1459 ge... 42 0.99
22gb|DQ429861.1| Sorghum bicolor voucher NSL77034 locus pSB1459 ge... 42 0.99
23gb|DQ429860.1| Sorghum bicolor voucher NSL56174 locus pSB1459 ge... 42 0.99
24gb|DQ429859.1| Sorghum bicolor voucher NSL56003 locus pSB1459 ge... 42 0.99
25gb|DQ429858.1| Sorghum bicolor voucher NSL55243 locus pSB1459 ge... 42 0.99
26gb|DQ429857.1| Sorghum bicolor voucher NSL51365 locus pSB1459 ge... 42 0.99
27gb|DQ429856.1| Sorghum bicolor voucher NSL51030 locus pSB1459 ge... 42 0.99
28gb|DQ429855.1| Sorghum bicolor voucher BTx623 locus pSB1459 geno... 42 0.99
29dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 42 0.99
30gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 3.9
31gb|AY960120.1| Protacanthamoeba bohemica small subunit ribosomal... 40 3.9
32gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 40 3.9
33gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete ... 40 3.9
34ref|XM_755792.1| Ustilago maydis 521 hypothetical protein (UM047... 40 3.9
35emb|AL591791.1|SME591791 Sinorhizobium meliloti 1021 complete ch... 40 3.9
36gb|BT009329.1| Triticum aestivum clone wlm24.pk0021.h1:fis, full... 40 3.9
37emb|BX842574.1| Mycobacterium tuberculosis H37Rv complete genome... 40 3.9
38emb|BX248336.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 3.9
39gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 3.9
40gb|CP000249.1| Frankia sp. CcI3, complete genome 40 3.9
41gb|AY242058.1| Oryza sativa (japonica cultivar-group) MONOCULM 1... 40 3.9
42gb|AF281817.1|AF281817 Tupaia herpesvirus strain 2, complete genome 40 3.9
43dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
44dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 3.9
45gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 3.9
46dbj|AP003616.4| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
47dbj|AP005316.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
48gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome 40 3.9
49gb|M77475.1|BLYSIP1A Hordeum vulgare seed imbitition protein (Si... 40 3.9 
>ref|XM_468330.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2748

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                          
Query: 193 cgaccccgttcaggacgcccgcctccaagcaccgcctccatttcccg 239
           |||||||| ||| ||||||||| ||||||||||||||||| ||||||
Sbjct: 62  cgaccccgctcaagacgcccgcatccaagcaccgcctccacttcccg 108
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                               
Query: 193      cgaccccgttcaggacgcccgcctccaagcaccgcctccatttcccg 239
                |||||||| ||| ||||||||| ||||||||||||||||| ||||||
Sbjct: 34650805 cgaccccgctcaagacgcccgcatccaagcaccgcctccacttcccg 34650851



 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 235      tcccgcccgcctccaccccc 254
                ||||||||||||||||||||
Sbjct: 16466627 tcccgcccgcctccaccccc 16466608
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>dbj|AP004081.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1116_E04
          Length = 94096

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                           
Query: 193  cgaccccgttcaggacgcccgcctccaagcaccgcctccatttcccg 239
            |||||||| ||| ||||||||| ||||||||||||||||| ||||||
Sbjct: 7756 cgaccccgctcaagacgcccgcatccaagcaccgcctccacttcccg 7802
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>dbj|AP003996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1112_G06
          Length = 122580

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 43/47 (91%)
 Strand = Plus / Plus

                                                             
Query: 193    cgaccccgttcaggacgcccgcctccaagcaccgcctccatttcccg 239
              |||||||| ||| ||||||||| ||||||||||||||||| ||||||
Sbjct: 117420 cgaccccgctcaagacgcccgcatccaagcaccgcctccacttcccg 117466
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>gb|AC135643.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0023F01, complete sequence
          Length = 145009

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 124   tggcgccggtgccgacgccgtcgtcg 149
             ||||| ||||||||||||||||||||
Sbjct: 57389 tggcgacggtgccgacgccgtcgtcg 57414
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>emb|AL731626.4|OSJN00271 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0002J11,
              complete sequence
          Length = 143582

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 38/42 (90%), Gaps = 1/42 (2%)
 Strand = Plus / Plus

                                                        
Query: 211    ccgcctccaagcaccgcctccatttcccgcccgcctccaccc 252
              ||||||||| || ||||||||||||||| |||||| ||||||
Sbjct: 118283 ccgcctcca-gcgccgcctccatttcccccccgcccccaccc 118323
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>emb|AL662969.3|OSJN00169 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0043L24,
             complete sequence
          Length = 164577

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 38/42 (90%), Gaps = 1/42 (2%)
 Strand = Plus / Plus

                                                       
Query: 211   ccgcctccaagcaccgcctccatttcccgcccgcctccaccc 252
             ||||||||| || ||||||||||||||| |||||| ||||||
Sbjct: 60903 ccgcctcca-gcgccgcctccatttcccccccgcccccaccc 60943
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 38/42 (90%), Gaps = 1/42 (2%)
 Strand = Plus / Plus

                                                          
Query: 211      ccgcctccaagcaccgcctccatttcccgcccgcctccaccc 252
                ||||||||| || ||||||||||||||| |||||| ||||||
Sbjct: 25334344 ccgcctcca-gcgccgcctccatttcccccccgcccccaccc 25334384
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 124      tggcgccggtgccgacgccgtcgtcg 149
                ||||| ||||||||||||||||||||
Sbjct: 26532331 tggcgacggtgccgacgccgtcgtcg 26532306
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>dbj|AK067306.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013100C22, full
           insert sequence
          Length = 5032

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 38/42 (90%), Gaps = 1/42 (2%)
 Strand = Plus / Minus

                                                     
Query: 211 ccgcctccaagcaccgcctccatttcccgcccgcctccaccc 252
           ||||||||| || ||||||||||||||| |||||| ||||||
Sbjct: 172 ccgcctcca-gcgccgcctccatttcccccccgcccccaccc 132
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                          
Query: 124      tggcgccggtgccgacgccgtcgtcg 149
                ||||| ||||||||||||||||||||
Sbjct: 26857595 tggcgacggtgccgacgccgtcgtcg 26857570
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>gb|DQ429871.1| Sorghum propinquum locus pSB1459 genomic sequence
          Length = 697

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 127 cgccggtgccgacgccgtcgtcgcg 151
           ||||||||||| |||||||||||||
Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
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>gb|DQ429870.1| Sorghum bicolor voucher PI585454 locus pSB1459 genomic sequence
          Length = 697

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 127 cgccggtgccgacgccgtcgtcgcg 151
           ||||||||||| |||||||||||||
Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
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>gb|DQ429869.1| Sorghum bicolor voucher PI267539 locus pSB1459 genomic sequence
          Length = 697

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 127 cgccggtgccgacgccgtcgtcgcg 151
           ||||||||||| |||||||||||||
Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
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>gb|DQ429868.1| Sorghum bicolor voucher PI267408 locus pSB1459 genomic sequence
          Length = 697

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 127 cgccggtgccgacgccgtcgtcgcg 151
           ||||||||||| |||||||||||||
Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
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>gb|DQ429867.1| Sorghum bicolor voucher PI221607 locus pSB1459 genomic sequence
          Length = 697

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 127 cgccggtgccgacgccgtcgtcgcg 151
           ||||||||||| |||||||||||||
Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
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>gb|DQ429866.1| Sorghum bicolor voucher PI152702 locus pSB1459 genomic sequence
          Length = 697

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 127 cgccggtgccgacgccgtcgtcgcg 151
           ||||||||||| |||||||||||||
Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
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>gb|DQ429865.1| Sorghum bicolor voucher NSL92371 locus pSB1459 genomic sequence
          Length = 697

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 127 cgccggtgccgacgccgtcgtcgcg 151
           ||||||||||| |||||||||||||
Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
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>gb|DQ429864.1| Sorghum bicolor voucher NSL87902 locus pSB1459 genomic sequence
          Length = 697

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 127 cgccggtgccgacgccgtcgtcgcg 151
           ||||||||||| |||||||||||||
Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
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>gb|DQ429863.1| Sorghum bicolor voucher NSL87666 locus pSB1459 genomic sequence
          Length = 697

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 127 cgccggtgccgacgccgtcgtcgcg 151
           ||||||||||| |||||||||||||
Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
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>gb|DQ429862.1| Sorghum bicolor voucher NSL77217 locus pSB1459 genomic sequence
          Length = 697

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 127 cgccggtgccgacgccgtcgtcgcg 151
           ||||||||||| |||||||||||||
Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
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>gb|DQ429861.1| Sorghum bicolor voucher NSL77034 locus pSB1459 genomic sequence
          Length = 697

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 127 cgccggtgccgacgccgtcgtcgcg 151
           ||||||||||| |||||||||||||
Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
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>gb|DQ429860.1| Sorghum bicolor voucher NSL56174 locus pSB1459 genomic sequence
          Length = 697

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 127 cgccggtgccgacgccgtcgtcgcg 151
           ||||||||||| |||||||||||||
Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
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>gb|DQ429859.1| Sorghum bicolor voucher NSL56003 locus pSB1459 genomic sequence
          Length = 697

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 127 cgccggtgccgacgccgtcgtcgcg 151
           ||||||||||| |||||||||||||
Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
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>gb|DQ429858.1| Sorghum bicolor voucher NSL55243 locus pSB1459 genomic sequence
          Length = 697

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 127 cgccggtgccgacgccgtcgtcgcg 151
           ||||||||||| |||||||||||||
Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
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>gb|DQ429857.1| Sorghum bicolor voucher NSL51365 locus pSB1459 genomic sequence
          Length = 697

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 127 cgccggtgccgacgccgtcgtcgcg 151
           ||||||||||| |||||||||||||
Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
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>gb|DQ429856.1| Sorghum bicolor voucher NSL51030 locus pSB1459 genomic sequence
          Length = 697

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 127 cgccggtgccgacgccgtcgtcgcg 151
           ||||||||||| |||||||||||||
Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
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>gb|DQ429855.1| Sorghum bicolor voucher BTx623 locus pSB1459 genomic sequence
          Length = 697

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 127 cgccggtgccgacgccgtcgtcgcg 151
           ||||||||||| |||||||||||||
Sbjct: 218 cgccggtgccgtcgccgtcgtcgcg 242
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 220     agcaccgcctccatttcccgc 240
               |||||||||||||||||||||
Sbjct: 3489631 agcaccgcctccatttcccgc 3489611
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 250     ccccccgcggcgcgggcggggccg 273
               ||||||| ||||||||||||||||
Sbjct: 2344309 ccccccggggcgcgggcggggccg 2344286
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>gb|AY960120.1| Protacanthamoeba bohemica small subunit ribosomal RNA gene,
           complete sequence
          Length = 2028

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 236 cccgcccgcctccacccccc 255
           ||||||||||||||||||||
Sbjct: 203 cccgcccgcctccacccccc 184
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 256    gcggcgcgggcggggccgccacgg 279
              |||||||||||||||||| |||||
Sbjct: 926621 gcggcgcgggcggggccgtcacgg 926644
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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 169     cgccgcaggcgacggcgggg 188
               ||||||||||||||||||||
Sbjct: 2473274 cgccgcaggcgacggcgggg 2473293
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>ref|XM_755792.1| Ustilago maydis 521 hypothetical protein (UM04738.1) partial mRNA
          Length = 1794

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 130 cggtgccgacgccgtcgtcg 149
           ||||||||||||||||||||
Sbjct: 334 cggtgccgacgccgtcgtcg 315
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>emb|AL591791.1|SME591791 Sinorhizobium meliloti 1021 complete chromosome; segment 10/12
          Length = 340900

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 218   caagcaccgcctccatttcc 237
             ||||||||||||||||||||
Sbjct: 57501 caagcaccgcctccatttcc 57520
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>gb|BT009329.1| Triticum aestivum clone wlm24.pk0021.h1:fis, full insert mRNA
            sequence
          Length = 2668

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 160  cgccgtcgacgccgcaggcg 179
            ||||||||||||||||||||
Sbjct: 1314 cgccgtcgacgccgcaggcg 1295
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>emb|BX842574.1| Mycobacterium tuberculosis H37Rv complete genome; segment 3/13
          Length = 349564

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 256    gcggcgcgggcggggccgccacgg 279
              |||||||||||||||||| |||||
Sbjct: 242439 gcggcgcgggcggggccgtcacgg 242462
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>emb|BX248336.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 3/14
          Length = 320050

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 256    gcggcgcgggcggggccgccacgg 279
              |||||||||||||||||| |||||
Sbjct: 260542 gcggcgcgggcggggccgtcacgg 260565
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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 161     gccgtcgacgccgcaggcga 180
               ||||||||||||||||||||
Sbjct: 1548024 gccgtcgacgccgcaggcga 1548043
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>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 258     ggcgcgggcggggccgccac 277
               ||||||||||||||||||||
Sbjct: 5304076 ggcgcgggcggggccgccac 5304095



 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 148     cgcggacgggcccgccgtcgacgc 171
               |||||||||| |||||||||||||
Sbjct: 4639930 cgcggacggggccgccgtcgacgc 4639907



 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 158     cccgccgtcgacgccgcaggcgac 181
               ||||||||||||||||| ||||||
Sbjct: 3760681 cccgccgtcgacgccgcgggcgac 3760704
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>gb|AY242058.1| Oryza sativa (japonica cultivar-group) MONOCULM 1 (MOC1) gene,
            complete cds
          Length = 3176

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 252  ccccgcggcgcgggcggggccgcc 275
            ||||||||||||||||| ||||||
Sbjct: 2689 ccccgcggcgcgggcggcgccgcc 2666
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>gb|AF281817.1|AF281817 Tupaia herpesvirus strain 2, complete genome
          Length = 195859

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 140   gccgtcgtcgcggacgggcccgccgtcg 167
             |||||||||| || ||||||||||||||
Sbjct: 15652 gccgtcgtcgtggccgggcccgccgtcg 15679
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 252      ccccgcggcgcgggcggggccgcc 275
                ||||||||||||||||| ||||||
Sbjct: 23932559 ccccgcggcgcgggcggcgccgcc 23932536
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 259     gcgcgggcggggccgccacg 278
               ||||||||||||||||||||
Sbjct: 7808230 gcgcgggcggggccgccacg 7808211



 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 127     cgccggtgccgacgccgtcg 146
               ||||||||||||||||||||
Sbjct: 4999793 cgccggtgccgacgccgtcg 4999774
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 254     ccgcggcgcgggcggggccg 273
               ||||||||||||||||||||
Sbjct: 4358086 ccgcggcgcgggcggggccg 4358067
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>dbj|AP003616.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0490F09
          Length = 149542

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 252   ccccgcggcgcgggcggggccgcc 275
             ||||||||||||||||| ||||||
Sbjct: 62170 ccccgcggcgcgggcggcgccgcc 62147
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>dbj|AP005316.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0527E02
          Length = 176826

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 235   tcccgcccgcctccaccccc 254
             ||||||||||||||||||||
Sbjct: 40042 tcccgcccgcctccaccccc 40023
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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 262     cgggcggggccgccacggag 281
               ||||||||||||||||||||
Sbjct: 3031653 cgggcggggccgccacggag 3031672
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>gb|M77475.1|BLYSIP1A Hordeum vulgare seed imbitition protein (Sip1) gene, complete cds
          Length = 4788

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 160  cgccgtcgacgccgcaggcg 179
            ||||||||||||||||||||
Sbjct: 2858 cgccgtcgacgccgcaggcg 2839


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,688,915
Number of Sequences: 3902068
Number of extensions: 1688915
Number of successful extensions: 42240
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40268
Number of HSP's gapped (non-prelim): 1972
length of query: 299
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 277
effective length of database: 17,147,199,772
effective search space: 4749774336844
effective search space used: 4749774336844
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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