ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl12e06 |
|---|---|
| Clone Library Name | barley_pub |
>EXO1_BRARE (Q803U7) Exonuclease 1 (EC 3.1.-.-) (Exonuclease I)| Length = 806 Score = 121 bits (303), Expect = 5e-28 Identities = 59/119 (49%), Positives = 77/119 (64%) Frame = +3 Query: 45 MGIQGLLPQLKSIMAPIRMEDLRGQTVAVDTYSWLHKGALSCGDRLCKGIPTTRHIEYCM 224 MGIQGLL +K P+ ++ RGQTVAVDTY WLHKGA SC ++L KG PT +++ YCM Sbjct: 1 MGIQGLLQFIKDASEPMHVKKYRGQTVAVDTYCWLHKGAFSCAEKLAKGEPTDQYVSYCM 60 Query: 225 HRVNLLRHHGVKPILVFDGGFLPMKSEQEVKRARSRKENLERAREHEAAGNSRAAFDCY 401 V++L GVKPILVFDG LP K E E R R+ NL++ ++ G A +C+ Sbjct: 61 KFVDMLLSFGVKPILVFDGRNLPSKQEVEKSRRERRQANLQKGKQLLREGKITEARECF 119
>EXO1_HUMAN (Q9UQ84) Exonuclease 1 (EC 3.1.-.-) (hExo1) (Exonuclease I) (hExoI)| Length = 846 Score = 120 bits (301), Expect = 8e-28 Identities = 58/119 (48%), Positives = 76/119 (63%) Frame = +3 Query: 45 MGIQGLLPQLKSIMAPIRMEDLRGQTVAVDTYSWLHKGALSCGDRLCKGIPTTRHIEYCM 224 MGIQGLL +K PI + +GQ VAVDTY WLHKGA++C ++L KG PT R++ +CM Sbjct: 1 MGIQGLLQFIKEASEPIHVRKYKGQVVAVDTYCWLHKGAIACAEKLAKGEPTDRYVGFCM 60 Query: 225 HRVNLLRHHGVKPILVFDGGFLPMKSEQEVKRARSRKENLERAREHEAAGNSRAAFDCY 401 VN+L HG+KPILVFDG LP K E E R R+ NL + ++ G A +C+ Sbjct: 61 KFVNMLLSHGIKPILVFDGCTLPSKKEVERSRRERRQANLLKGKQLLREGKVSEARECF 119
>EXO1_MOUSE (Q9QZ11) Exonuclease 1 (EC 3.1.-.-) (mExo1) (Exonuclease I)| Length = 837 Score = 118 bits (296), Expect = 3e-27 Identities = 56/119 (47%), Positives = 77/119 (64%) Frame = +3 Query: 45 MGIQGLLPQLKSIMAPIRMEDLRGQTVAVDTYSWLHKGALSCGDRLCKGIPTTRHIEYCM 224 MGIQGLL ++ P+ ++ +GQ VAVDTY WLHKGA++C ++L KG PT R++ +CM Sbjct: 1 MGIQGLLQFIQEASEPVNVKKYKGQAVAVDTYCWLHKGAIACAEKLAKGEPTDRYVGFCM 60 Query: 225 HRVNLLRHHGVKPILVFDGGFLPMKSEQEVKRARSRKENLERAREHEAAGNSRAAFDCY 401 VN+L +GVKPIL+FDG LP K E E R R+ NL + ++ G A DC+ Sbjct: 61 KFVNMLLSYGVKPILIFDGCTLPSKKEVERSRRERRQSNLLKGKQLLREGKVSEARDCF 119
>EXO1_XENLA (Q9W6K2) Exonuclease 1 (EC 3.1.-.-) (Exonuclease I)| Length = 734 Score = 117 bits (293), Expect = 7e-27 Identities = 55/119 (46%), Positives = 78/119 (65%) Frame = +3 Query: 45 MGIQGLLPQLKSIMAPIRMEDLRGQTVAVDTYSWLHKGALSCGDRLCKGIPTTRHIEYCM 224 MGIQGLL LK P+ ++ +G+TVAVDTY WLHKGA +C ++L KG PT +++++CM Sbjct: 1 MGIQGLLQFLKEASEPVHVKKYKGKTVAVDTYCWLHKGAFACAEKLAKGEPTDQYVQFCM 60 Query: 225 HRVNLLRHHGVKPILVFDGGFLPMKSEQEVKRARSRKENLERAREHEAAGNSRAAFDCY 401 V++L GVKPILVFDG LP K + E R R+ NL++ ++ G A +C+ Sbjct: 61 KLVHMLLSFGVKPILVFDGCTLPSKKDVEKARREKRQTNLQKGKQLLREGKLAEARECF 119
>EXO1_DROME (Q24558) Exonuclease 1 (EC 3.1.-.-) (Exonuclease I) (Protein tosca)| Length = 732 Score = 109 bits (272), Expect = 2e-24 Identities = 51/105 (48%), Positives = 71/105 (67%) Frame = +3 Query: 45 MGIQGLLPQLKSIMAPIRMEDLRGQTVAVDTYSWLHKGALSCGDRLCKGIPTTRHIEYCM 224 MGI GL+P + + + ++D+RG TVAVDTY WLHKG C ++L +G T +I+YC+ Sbjct: 1 MGITGLIPFVGKASSQLHLKDIRGSTVAVDTYCWLHKGVFGCAEKLARGEDTDVYIQYCL 60 Query: 225 HRVNLLRHHGVKPILVFDGGFLPMKSEQEVKRARSRKENLERARE 359 VN+L + +KPILVFDG LP K+ E +R SRK++ ERA E Sbjct: 61 KYVNMLLSYDIKPILVFDGQHLPAKALTEKRRRDSRKQSKERAAE 105
>EXO1_YEAST (P39875) Exodeoxyribonuclease 1 (EC 3.1.-.-) (Exodeoxyribonuclease| I) (Exonuclease I) (EXO I) (Protein DHS1) Length = 702 Score = 103 bits (258), Expect = 8e-23 Identities = 51/119 (42%), Positives = 71/119 (59%) Frame = +3 Query: 45 MGIQGLLPQLKSIMAPIRMEDLRGQTVAVDTYSWLHKGALSCGDRLCKGIPTTRHIEYCM 224 MGIQGLLPQLK I P+ + G+ +A+D Y+WLH+ A SC L G PT +++++ + Sbjct: 1 MGIQGLLPQLKPIQNPVSLRRYEGEVLAIDGYAWLHRAACSCAYELAMGKPTDKYLQFFI 60 Query: 225 HRVNLLRHHGVKPILVFDGGFLPMKSEQEVKRARSRKENLERAREHEAAGNSRAAFDCY 401 R +LL+ V+P LVFDG +P+K E KR RKEN A A G + A D + Sbjct: 61 KRFSLLKTFKVEPYLVFDGDAIPVKKSTESKRRDKRKENKAIAERLWACGEKKNAMDYF 119
>EXO1_SCHPO (P53695) Exodeoxyribonuclease 1 (EC 3.1.-.-) (Exodeoxyribonuclease| I) (Exonuclease I) (EXO I) Length = 571 Score = 91.3 bits (225), Expect = 5e-19 Identities = 42/105 (40%), Positives = 65/105 (61%) Frame = +3 Query: 45 MGIQGLLPQLKSIMAPIRMEDLRGQTVAVDTYSWLHKGALSCGDRLCKGIPTTRHIEYCM 224 MGI+GLL LK + +E+ G+T+ VD Y WLHK +C L T ++++Y + Sbjct: 1 MGIKGLLGLLKPMQKSSHVEEFSGKTLGVDGYVWLHKAVFTCAHELAFNKETDKYLKYAI 60 Query: 225 HRVNLLRHHGVKPILVFDGGFLPMKSEQEVKRARSRKENLERARE 359 H+ +L+++GVKP++VFDGG LP K+ E KR R+E E ++ Sbjct: 61 HQALMLQYYGVKPLIVFDGGPLPCKASTEQKRKERRQEAFELGKK 105
>DIN7_YEAST (Q12086) DNA damage-inducible protein DIN7| Length = 430 Score = 90.1 bits (222), Expect = 1e-18 Identities = 44/119 (36%), Positives = 72/119 (60%) Frame = +3 Query: 45 MGIQGLLPQLKSIMAPIRMEDLRGQTVAVDTYSWLHKGALSCGDRLCKGIPTTRHIEYCM 224 MGI GLLPQLK I + ++ QT+A+D Y+WLH+ + +C L PT +++++ + Sbjct: 1 MGIPGLLPQLKRIQKQVSLKKYMYQTLAIDGYAWLHRASCACAFELVMNKPTNKYLQFFI 60 Query: 225 HRVNLLRHHGVKPILVFDGGFLPMKSEQEVKRARSRKENLERAREHEAAGNSRAAFDCY 401 R+ LL+ +KP +VFDG L +K+ E +R + R EN A++ +AGN A + + Sbjct: 61 KRLQLLKRLKIKPYIVFDGDSLFVKNHTETRRRKKRLENEMIAKKLWSAGNRYNAMEYF 119
>RAD13_SCHPO (P28706) DNA-repair protein rad13| Length = 1112 Score = 52.4 bits (124), Expect = 3e-07 Identities = 29/103 (28%), Positives = 53/103 (51%) Frame = +3 Query: 45 MGIQGLLPQLKSIMAPIRMEDLRGQTVAVDTYSWLHKGALSCGDRLCKGIPTTRHIEYCM 224 MG+ GL L+ + P+++E L + +A+D W+++ + D+ + ++ H+ Sbjct: 1 MGVSGLWDILEPVKRPVKLETLVNKRLAIDASIWIYQFLKAVRDKEGNQLKSS-HVVGFF 59 Query: 225 HRVNLLRHHGVKPILVFDGGFLPMKSEQEVKRARSRKENLERA 353 R+ L G+KP+ VFDGG +K + KR R + E A Sbjct: 60 RRICKLLFFGIKPVFVFDGGAPSLKRQTIQKRQARRLDREENA 102
>FEN_METAC (Q8TIY5) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 338 Score = 49.7 bits (117), Expect = 2e-06 Identities = 33/107 (30%), Positives = 52/107 (48%), Gaps = 7/107 (6%) Frame = +3 Query: 93 IRMEDLRGQTVAVDTYSWLHKGALSCGDRLCKGIP-------TTRHIEYCMHRVNLLRHH 251 I + DL + VAVD ++ LH+ R G P T H+ ++R L Sbjct: 14 IELSDLSNRVVAVDAFNTLHQFLSIIRQR--DGSPLVNSRGKVTSHLSGLLYRTASLVEA 71 Query: 252 GVKPILVFDGGFLPMKSEQEVKRARSRKENLERAREHEAAGNSRAAF 392 G+KP+ +FDG +KSE +R R+ +LE+ +A G+ AA+ Sbjct: 72 GIKPVFIFDGKPPDLKSETLSRRKEVRETSLEKWENAKAEGDLEAAY 118
>ERCC5_XENLA (P14629) DNA-repair protein complementing XP-G cells homolog| (Xeroderma pigmentosum group G-complementing protein homolog) Length = 1196 Score = 48.9 bits (115), Expect = 3e-06 Identities = 32/98 (32%), Positives = 46/98 (46%) Frame = +3 Query: 45 MGIQGLLPQLKSIMAPIRMEDLRGQTVAVDTYSWLHKGALSCGDRLCKGIPTTRHIEYCM 224 MG+QGL L+ PI L G+ +AVD WL++ DR I H+ Sbjct: 1 MGVQGLWKLLECSGRPINPGTLEGKILAVDISIWLNQAVKGARDRQGNAIQNA-HLLTLF 59 Query: 225 HRVNLLRHHGVKPILVFDGGFLPMKSEQEVKRARSRKE 338 HR+ L ++PI VFDG P+ Q + + R R + Sbjct: 60 HRLCKLLFFRIRPIFVFDGE-APLLKRQTLAKRRQRTD 96
>ERCC5_HUMAN (P28715) DNA-repair protein complementing XP-G cells (Xeroderma| pigmentosum group G-complementing protein) (DNA excision repair protein ERCC-5) Length = 1186 Score = 48.5 bits (114), Expect = 4e-06 Identities = 32/98 (32%), Positives = 48/98 (48%) Frame = +3 Query: 45 MGIQGLLPQLKSIMAPIRMEDLRGQTVAVDTYSWLHKGALSCGDRLCKGIPTTRHIEYCM 224 MG+QGL L+ + E L G+ +AVD WL++ DR I H+ Sbjct: 1 MGVQGLWKLLECSGRQVSPEALEGKILAVDISIWLNQALKGVRDRHGNSIENP-HLLTLF 59 Query: 225 HRVNLLRHHGVKPILVFDGGFLPMKSEQEVKRARSRKE 338 HR+ L ++PI VFDG P+ +Q + + R RK+ Sbjct: 60 HRLCKLLFFRIRPIFVFDGD-APLLKKQTLVKRRQRKD 96
>RAD2_YEAST (P07276) DNA-repair protein RAD2| Length = 1031 Score = 48.1 bits (113), Expect = 5e-06 Identities = 30/105 (28%), Positives = 49/105 (46%) Frame = +3 Query: 45 MGIQGLLPQLKSIMAPIRMEDLRGQTVAVDTYSWLHKGALSCGDRLCKGIPTTRHIEYCM 224 MG+ P+R+E L + +AVD W+++ + D+ + + HI Sbjct: 1 MGVHSFWDIAGPTARPVRLESLEDKRMAVDASIWIYQFLKAVRDQEGNAVKNS-HITGFF 59 Query: 225 HRVNLLRHHGVKPILVFDGGFLPMKSEQEVKRARSRKENLERARE 359 R+ L + G++P+ VFDGG +K E R RKE + RE Sbjct: 60 RRICKLLYFGIRPVFVFDGGVPVLKRE----TIRQRKERRQGKRE 100
>FEN1B_ORYSA (Q75LI2) Flap endonuclease 1b (EC 3.1.-.-) (OsFEN-1b)| Length = 412 Score = 47.4 bits (111), Expect = 8e-06 Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 13/118 (11%) Frame = +3 Query: 45 MGIQGLLPQLKSIMAP-----IRMEDLRGQTVAVDTYSWLHKGALSCGDRLCKGIPT--- 200 MGI+GL +L + AP R+ED RG+ VA+DT +++ + G + + + Sbjct: 1 MGIKGLT-KLLAEHAPGAAVRRRVEDYRGRVVAIDTSLSIYQFLIVVGRKGTEVLTNEAG 59 Query: 201 --TRHIEYCMHRVNLLRHHGVKPILVFDGGFLPMKSEQEVKRARSR---KENLERARE 359 T H++ ++R + G+KP+ VFDG MK ++ KR+ R E+L RA E Sbjct: 60 EVTSHLQGMLNRTVRILEAGIKPVFVFDGEPPDMKKKELAKRSLKRDGSSEDLNRAIE 117
>FEN1_HUMAN (P39748) Flap endonuclease 1 (EC 3.1.-.-) (Maturation factor 1)| (MF1) Length = 380 Score = 47.0 bits (110), Expect = 1e-05 Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 8/118 (6%) Frame = +3 Query: 45 MGIQGLLPQLKSIM-APIRMEDLR---GQTVAVDTYSWLHKGALSC---GDRLCKGI-PT 200 MGIQGL + + + IR D++ G+ VA+D +++ ++ GD L T Sbjct: 1 MGIQGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGET 60 Query: 201 TRHIEYCMHRVNLLRHHGVKPILVFDGGFLPMKSEQEVKRARSRKENLERAREHEAAG 374 T H+ +R + +G+KP+ VFDG +KS + KR+ R E ++ ++ +AAG Sbjct: 61 TSHLMGMFYRTIRMMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQAAG 118
>FEN_METMA (Q8PYF6) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 338 Score = 47.0 bits (110), Expect = 1e-05 Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 7/107 (6%) Frame = +3 Query: 93 IRMEDLRGQTVAVDTYSWLHKGALSCGDRLCKGIP-------TTRHIEYCMHRVNLLRHH 251 I + DL + VAVD ++ LH+ R G P T H+ ++R L Sbjct: 14 IELSDLSNRVVAVDAFNTLHQFLSIIRQR--DGSPLVNSQGKVTSHLSGLLYRTASLVEA 71 Query: 252 GVKPILVFDGGFLPMKSEQEVKRARSRKENLERAREHEAAGNSRAAF 392 G+KP+ VFDG MK+ +R R+ + E+ +A GN AA+ Sbjct: 72 GIKPVFVFDGKPPEMKTGTLNRRKEIRESSKEKWENAKAEGNLEAAY 118
>FEN_METTH (O27670) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 328 Score = 47.0 bits (110), Expect = 1e-05 Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 9/100 (9%) Frame = +3 Query: 69 QLKSIMAP--IRMEDLRGQTVAVDTYSWLHKGALSCGDRLCKGIP-------TTRHIEYC 221 +L+ +++P IR+EDLRG+TVAVD + L++ S R G P T H+ Sbjct: 4 KLRDVVSPRRIRLEDLRGRTVAVDAANTLYQFLSSIRQR--DGTPLMDSRGRVTSHLSGI 61 Query: 222 MHRVNLLRHHGVKPILVFDGGFLPMKSEQEVKRARSRKEN 341 ++R + ++ I VFDG +K E +RA RK++ Sbjct: 62 LYRTAAVMEREIRVIYVFDGRSHHLKGETVSRRADIRKKS 101
>ERCC5_MOUSE (P35689) DNA-repair protein complementing XP-G cells homolog| (Xeroderma pigmentosum group G-complementing protein homolog) (DNA excision repair protein ERCC-5) Length = 1170 Score = 45.8 bits (107), Expect = 2e-05 Identities = 31/99 (31%), Positives = 48/99 (48%) Frame = +3 Query: 45 MGIQGLLPQLKSIMAPIRMEDLRGQTVAVDTYSWLHKGALSCGDRLCKGIPTTRHIEYCM 224 MG+QGL L+ + E L G+ +AVD WL++ D I H+ Sbjct: 1 MGVQGLWKLLECSGHRVSPEALEGKVLAVDISIWLNQALKGVRDSHGNVIENA-HLLTLF 59 Query: 225 HRVNLLRHHGVKPILVFDGGFLPMKSEQEVKRARSRKEN 341 HR+ L ++PI VFDG P+ +Q + + R RK++ Sbjct: 60 HRLCKLLFFRIRPIFVFDGD-APLLKKQTLAKRRQRKDS 97
>FEN_HALSA (Q9HQ27) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 327 Score = 43.1 bits (100), Expect = 2e-04 Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 6/101 (5%) Frame = +3 Query: 105 DLRGQTVAVDTYSWLHKGALSCGDRLCKGIPTTRHIEYCMHRVNLLR------HHGVKPI 266 DL G VAVD ++WL+K + + TT + V ++ HG+ P+ Sbjct: 19 DLEGSVVAVDAHNWLYKYLTTTVQWTGADVYTTSDGTEVANLVGAVQGLPKFFEHGLTPV 78 Query: 267 LVFDGGFLPMKSEQEVKRARSRKENLERAREHEAAGNSRAA 389 V+DGG +K ++ R R+ E+ + AG++ A Sbjct: 79 FVWDGGVTELKDDEIADRREQRERYEEQLDDAREAGDAAEA 119
>FEN_SULSO (Q980U8) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 349 Score = 42.4 bits (98), Expect = 3e-04 Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 7/103 (6%) Frame = +3 Query: 72 LKSIMAPIRMEDLRGQTVAVDTYSWLHKGALSCGDRLCKGIP-------TTRHIEYCMHR 230 +K + + +L+G+ V++D Y+ L++ + R G P T H+ +R Sbjct: 7 VKDVKRELSFSELKGKRVSIDGYNALYQFLAAI--RQPDGTPLMDSQGRVTSHLSGLFYR 64 Query: 231 VNLLRHHGVKPILVFDGGFLPMKSEQEVKRARSRKENLERARE 359 + GV PI VFDG KSE E++R R KE ER E Sbjct: 65 TINILEEGVIPIYVFDGKPPEQKSE-ELERRRKAKEEAERKLE 106
>FEN_AERPE (Q9YFY5) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 351 Score = 40.8 bits (94), Expect = 8e-04 Identities = 31/106 (29%), Positives = 46/106 (43%), Gaps = 7/106 (6%) Frame = +3 Query: 93 IRMEDLRGQTVAVDTYSWLHKGALSCGDRLCKGIP-------TTRHIEYCMHRVNLLRHH 251 + + L G +A+D Y+ L++ + R G P T H+ +R L Sbjct: 18 VELRALSGYVLALDAYNMLYQFLTAI--RQPDGTPLLDREGRVTSHLSGLFYRTINLVEE 75 Query: 252 GVKPILVFDGGFLPMKSEQEVKRARSRKENLERAREHEAAGNSRAA 389 G+KP+ VFDG MKS + +R R + E R R AG A Sbjct: 76 GIKPVYVFDGKPPEMKSREVEERLRRKAEAEARYRRAVEAGEVEEA 121
>FEN_SULAC (Q4JAN1) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 349 Score = 40.4 bits (93), Expect = 0.001 Identities = 25/103 (24%), Positives = 50/103 (48%), Gaps = 7/103 (6%) Frame = +3 Query: 72 LKSIMAPIRMEDLRGQTVAVDTYSWLHKGALSCGDRLCKGIPT-------TRHIEYCMHR 230 ++ + I + +++G+ +++D Y+ +++ + R G P T H+ +R Sbjct: 7 VEDVKREINLNEMKGKKISIDAYNTIYQFLAAI--RQPDGTPLIDSKGRITSHLNGLFYR 64 Query: 231 VNLLRHHGVKPILVFDGGFLPMKSEQEVKRARSRKENLERARE 359 + G+ PI VFDG P K +E++R + KE E+ E Sbjct: 65 TISIIESGIIPIFVFDGK-PPEKKSEEIERRKRAKEEAEKKLE 106
>FEN_PYRAE (Q8ZYN2) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 346 Score = 40.0 bits (92), Expect = 0.001 Identities = 32/121 (26%), Positives = 54/121 (44%), Gaps = 15/121 (12%) Frame = +3 Query: 75 KSIMAPIRMEDLRGQTVAVDTYSWLHKGALSCGDRLCKGIPT-------TRHIEYCMHRV 233 K + +++E L G+ +A+D Y+ L++ S R G P T H+ +R Sbjct: 12 KEVRREVKLESLSGKCIALDAYNALYQFLASI--RQPDGTPLMDRAGRITSHLSGLFYRT 69 Query: 234 NLLRHHGVKPILVFDGGFLPMKSEQEVKRARSRKENLERA--------REHEAAGNSRAA 389 L G++P+ VFDG K + +R ++R++ +E RE A RA Sbjct: 70 INLLEAGIRPVYVFDGKPPEFKLAEIEERRKTREKAMEEVLRAIKEGRREDVAKYAKRAV 129 Query: 390 F 392 F Sbjct: 130 F 130
>FEN_PYRFU (O93634) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 340 Score = 39.7 bits (91), Expect = 0.002 Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 7/96 (7%) Frame = +3 Query: 93 IRMEDLRGQTVAVDTYSWLHKGALSCGDRLCKGIPT-------TRHIEYCMHRVNLLRHH 251 I +E+L G+ +A+D + +++ + + G P T H+ +R L Sbjct: 14 IELENLYGKKIAIDALNAIYQFLSTIRQK--DGTPLMDSKGRITSHLSGLFYRTINLMEA 71 Query: 252 GVKPILVFDGGFLPMKSEQEVKRARSRKENLERARE 359 G+KP+ VFDG K ++ KR +R+E E+ RE Sbjct: 72 GIKPVYVFDGEPPEFKKKELEKRREAREEAEEKWRE 107
>FEN_NANEQ (P61942) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 339 Score = 39.7 bits (91), Expect = 0.002 Identities = 33/115 (28%), Positives = 54/115 (46%), Gaps = 9/115 (7%) Frame = +3 Query: 72 LKSIMAPIRME----DLRGQTVAVDTYSWLHKGALSCGD-----RLCKGIPTTRHIEYCM 224 LK I+ P++ E L G+ +A+D ++ L++ S R KG T H+ Sbjct: 5 LKEIVDPVKKEIEFKQLFGKVIAIDAFNALYQFLFSIRQDGEPLRDSKG-RITSHLSGLF 63 Query: 225 HRVNLLRHHGVKPILVFDGGFLPMKSEQEVKRARSRKENLERAREHEAAGNSRAA 389 +R L +G+KPI VFDG K KR + +++ + +E GN + A Sbjct: 64 YRTINLLEYGIKPIYVFDGTPPKFKIVAWEKRKKHKEQLESKYKEALKKGNIQEA 118
>RAD27_YEAST (P26793) Structure-specific endonuclease RAD27| Length = 382 Score = 39.7 bits (91), Expect = 0.002 Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 9/114 (7%) Frame = +3 Query: 45 MGIQGLLPQLKS-IMAPIRMEDLR---GQTVAVDTYSWLHKGALSC-----GDRLCKGIP 197 MGI+GL + + + IR D++ G+ VA+D L++ ++ G + Sbjct: 1 MGIKGLNAIISEHVPSAIRKSDIKSFFGRKVAIDASMSLYQFLIAVRQQDGGQLTNEAGE 60 Query: 198 TTRHIEYCMHRVNLLRHHGVKPILVFDGGFLPMKSEQEVKRARSRKENLERARE 359 TT H+ +R + +G+KP VFDG +KS + KR+ R E ++ E Sbjct: 61 TTSHLMGMFYRTLRMIDNGIKPCYVFDGKPPDLKSHELTKRSSRRVETEKKLAE 114
>UVH3_ARATH (Q9ATY5) DNA-repair protein UVH3 (EC 3.1.-.-) (UV hypersensitive| protein 3) (XPG homolog) (ERCC5 homolog) (RAD2 homolog) (AtUVH3) (AtXPG) (AtRAD2) Length = 1479 Score = 39.3 bits (90), Expect = 0.002 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 1/106 (0%) Frame = +3 Query: 45 MGIQGLLPQLKSIMAPIRMEDLRGQTVAVDTYSWLHKGALSCGDRLCKG-IPTTRHIEYC 221 MG+QGL L + + +E L + +A+D W+ + + D KG + H+ Sbjct: 1 MGVQGLWELLAPVGRRVSVETLANKRLAIDASIWMVQFIKAMRDE--KGDMVQNAHLIGF 58 Query: 222 MHRVNLLRHHGVKPILVFDGGFLPMKSEQEVKRARSRKENLERARE 359 R+ L KPI VFDG +K + R R R+ + R+ Sbjct: 59 FRRICKLLFLRTKPIFVFDGATPALKRRTVIARRRQRENAQTKIRK 104
>FEN_PYRAB (Q9V0P9) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 343 Score = 38.9 bits (89), Expect = 0.003 Identities = 29/106 (27%), Positives = 50/106 (47%), Gaps = 7/106 (6%) Frame = +3 Query: 93 IRMEDLRGQTVAVDTYSWLHKGALSCGDRLCKGIPT-------TRHIEYCMHRVNLLRHH 251 I +E+L G+ +A+D + +++ + R G P T H+ +R L Sbjct: 14 IELENLYGKKIAIDALNAIYQFLSTIRQR--DGTPLMDSKGRITSHLSGLFYRTINLMEA 71 Query: 252 GVKPILVFDGGFLPMKSEQEVKRARSRKENLERAREHEAAGNSRAA 389 G+KP+ VFDG K ++ KR +R+E + +E A G+ A Sbjct: 72 GIKPVYVFDGKPPAFKKKELEKRREAREEAEIKWKEALAKGDIEEA 117
>FEN_THEVO (Q97B98) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 335 Score = 38.5 bits (88), Expect = 0.004 Identities = 28/91 (30%), Positives = 43/91 (47%), Gaps = 8/91 (8%) Frame = +3 Query: 99 MEDLRGQTVAVDTYSWLHKGALSCGDRLCKGIP-------TTRHIEYCMHRVNLLRHHGV 257 ++D Q A+DTY+ L++ L R G P T H+ +R L +G+ Sbjct: 16 LKDQANQVFAIDTYNILYQ--LLSNVRQYDGTPLMDSSGNVTSHLYGIFYRTVNLVENGI 73 Query: 258 KPILVFDGGFLPMKSEQ-EVKRARSRKENLE 347 KPI VFDG P+K+ E+++ K E Sbjct: 74 KPIFVFDGKPSPLKNRTLEIRQLAKEKAKAE 104
>FEN_SULTO (Q976H6) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 351 Score = 38.5 bits (88), Expect = 0.004 Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 7/103 (6%) Frame = +3 Query: 72 LKSIMAPIRMEDLRGQTVAVDTYSWLHKGALSCGDRLCKGIP-------TTRHIEYCMHR 230 ++ I + +L+G+ +++D Y+ L++ + R G P T H+ +R Sbjct: 7 VEEIKKELSFAELKGKKISIDAYNALYQFLAAI--RQPDGTPLMDSQGRVTSHLNGLFYR 64 Query: 231 VNLLRHHGVKPILVFDGGFLPMKSEQEVKRARSRKENLERARE 359 + G+ PI VFDG P + QE++R + KE E+ E Sbjct: 65 TISILEEGIIPIYVFDGK-PPEQKAQELERRKKVKEEAEKKLE 106
>FEN_PYRKO (Q5JGN0) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 340 Score = 38.1 bits (87), Expect = 0.005 Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 9/124 (7%) Frame = +3 Query: 45 MGIQ--GLLPQLKSIMAPIRMEDLRGQTVAVDTYSWLHKGALSCGDRLCKGIPT------ 200 MG+Q L+P+ + I +E L G+ VA+D ++ +++ + R G P Sbjct: 1 MGVQIGELIPRKE-----IELESLYGKKVAIDAFNAMYQFLSTIRQR--DGTPLMDSQGR 53 Query: 201 -TRHIEYCMHRVNLLRHHGVKPILVFDGGFLPMKSEQEVKRARSRKENLERAREHEAAGN 377 T H+ +R L G+KP VFDG K + KR +R+E E+ E G+ Sbjct: 54 ITSHLSGFFYRTINLMEAGIKPAYVFDGKPPDFKKRELEKRREAREEAEEKWYEALEKGD 113 Query: 378 SRAA 389 A Sbjct: 114 LEEA 117
>FEN_PYRHO (O50123) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 343 Score = 38.1 bits (87), Expect = 0.005 Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 7/106 (6%) Frame = +3 Query: 93 IRMEDLRGQTVAVDTYSWLHKGALSCGDRLCKGIPT-------TRHIEYCMHRVNLLRHH 251 I +E+L G+ +A+D + +++ + R G P T H+ +R L Sbjct: 14 IDLENLYGKKIAIDALNAIYQFLSTIRQR--DGTPLMDSKGRITSHLSGLFYRTINLMEA 71 Query: 252 GVKPILVFDGGFLPMKSEQEVKRARSRKENLERAREHEAAGNSRAA 389 G+KP VFDG K ++ KR +R+E + +E A GN A Sbjct: 72 GIKPAYVFDGKPPEFKRKELEKRREAREEAELKWKEALAKGNLEEA 117
>FEN1_MOUSE (P39749) Flap endonuclease 1 (EC 3.1.-.-)| Length = 378 Score = 38.1 bits (87), Expect = 0.005 Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 7/117 (5%) Frame = +3 Query: 45 MGIQGLLPQLKSIM-APIRMEDLR---GQTVAVDTYSWLHKGALSC---GDRLCKGIPTT 203 MGI GL + + + IR D++ G+ VA+D +++ ++ GD L T Sbjct: 1 MGIHGLAKLIADVAPSAIRENDIKSYFGRKVAIDASMSIYQFLIAVRQGGDVLQNEEGET 60 Query: 204 RHIEYCMHRVNLLRHHGVKPILVFDGGFLPMKSEQEVKRARSRKENLERAREHEAAG 374 + +R + +G+KP+ VFDG +KS + KR+ R E ++ ++ + AG Sbjct: 61 TSLMGMFYRT-IRMENGIKPVYVFDGKPPQLKSGELAKRSERRAEAEKQLQQAQEAG 116
>RAD2_SCHPO (P39750) DNA-repair protein rad2| Length = 380 Score = 37.7 bits (86), Expect = 0.007 Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 9/121 (7%) Frame = +3 Query: 45 MGIQGLLPQLKS-IMAPIRMEDLR---GQTVAVDT----YSWLHKGALSCGDRLCKGI-P 197 MGI+GL L A ++ D++ G+ VA+D Y +L + G +L Sbjct: 1 MGIKGLAQVLSEHAPASVKHNDIKNYFGRKVAIDASMSLYQFLIQVRSQDGQQLMNEQGE 60 Query: 198 TTRHIEYCMHRVNLLRHHGVKPILVFDGGFLPMKSEQEVKRARSRKENLERAREHEAAGN 377 TT H+ +R + +G+KP VFDG +KS + KR ++ E E + G Sbjct: 61 TTSHLMGMFYRTLRIVDNGIKPCFVFDGKPPTLKSGELAKRVARHQKAREDQEETKEVGT 120 Query: 378 S 380 + Sbjct: 121 A 121
>FEN1A_ORYSA (Q9SXQ6) Flap endonuclease 1a (EC 3.1.-.-) (OsFEN-1a)| Length = 380 Score = 37.7 bits (86), Expect = 0.007 Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 9/123 (7%) Frame = +3 Query: 45 MGIQGLLPQLKS----IMAPIRMEDLRGQTVAVDTYSWLHKGALSCGDRLCKGIPT---- 200 MGI+GL L M + E G+ +AVD +++ + G + + Sbjct: 1 MGIKGLTKLLADNAPKAMKEQKFESYFGRRIAVDASMSIYQFLIVVGRTGMETLTNEAGE 60 Query: 201 -TRHIEYCMHRVNLLRHHGVKPILVFDGGFLPMKSEQEVKRARSRKENLERAREHEAAGN 377 T H++ +R L G+KP+ VFDG +K ++ KR R++ + E G+ Sbjct: 61 VTSHLQGMFNRTIRLLEAGIKPVYVFDGKPPDLKKQELAKRYSKREDATKELTEAVEEGD 120 Query: 378 SRA 386 A Sbjct: 121 KDA 123
>FEN_PICTO (Q6L2I9) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 338 Score = 37.7 bits (86), Expect = 0.007 Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 8/101 (7%) Frame = +3 Query: 99 MEDLRGQTVAVDTYSWLHKGALSC-GDRLCKGIPT-------TRHIEYCMHRVNLLRHHG 254 ++D G V+VD Y+ +++ S GD G P T H+ +R + L + Sbjct: 16 LKDNSGSIVSVDAYNIIYQFLSSIRGD---DGEPLKDSNGNITSHLSGIFYRTSNLLENN 72 Query: 255 VKPILVFDGGFLPMKSEQEVKRARSRKENLERAREHEAAGN 377 +KP+ VFDG +KSE +R+ +++N+ + E A+ + Sbjct: 73 IKPVYVFDGKPFHLKSETLRERSLIKEKNIMKLEEAIASND 113
>FEN_METKA (Q8TXU4) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 348 Score = 37.4 bits (85), Expect = 0.009 Identities = 27/107 (25%), Positives = 52/107 (48%), Gaps = 9/107 (8%) Frame = +3 Query: 63 LPQLKSIMAPIR--MEDLRGQTVAVDTYSWLHKGALSCGDRLCKGIPT-------TRHIE 215 L +L+ ++ P + L G+ +A+D ++ L++ + + G P T H+ Sbjct: 3 LAELRELIEPEETDLRALAGREIAIDAFNALYQFLTTI---MKDGRPLMDSRGRITSHLN 59 Query: 216 YCMHRVNLLRHHGVKPILVFDGGFLPMKSEQEVKRARSRKENLERAR 356 ++R L G+KP+ VFDG +K E +R ++E +E+ R Sbjct: 60 GLLYRTVNLVEEGIKPVYVFDGEPPDLKRETLERRRERKEEAMEKLR 106
>FEN_THEAC (Q9HJD4) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 336 Score = 37.0 bits (84), Expect = 0.011 Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 11/98 (11%) Frame = +3 Query: 99 MEDLRGQTVAVDTYSWLHKGALSCGDRLCKGIP-------TTRHIEYCMHRVNLLRHHGV 257 ++D QT ++DTY+ L++ L R G+P T H+ +R L + + Sbjct: 16 LKDQGNQTFSIDTYNILYQ--LLSNVRQYDGMPLMDSHGNVTSHLYGIFYRTINLLENRI 73 Query: 258 KPILVFDGGFLPMK----SEQEVKRARSRKENLERARE 359 +P+ VFDG P+K SE+++ + +++ E LE A E Sbjct: 74 RPVYVFDGKPSPLKNRTISERQMMKEKAKAE-LEEAIE 110
>FEN_ARCFU (O29975) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 336 Score = 33.1 bits (74), Expect = 0.16 Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 7/89 (7%) Frame = +3 Query: 93 IRMEDLRGQTVAVDTYSWLHKGALSCGDRLCKGIPT-------TRHIEYCMHRVNLLRHH 251 + +E G+ +AVD ++ L++ R G P T H+ ++RV+ + Sbjct: 14 VELEYFSGKKIAVDAFNTLYQFISII--RQPDGTPLKDSQGRITSHLSGILYRVSNMVEV 71 Query: 252 GVKPILVFDGGFLPMKSEQEVKRARSRKE 338 G++P+ VFDG K + +R + R E Sbjct: 72 GIRPVFVFDGEPPEFKKAEIEERKKRRAE 100
>FEN_METJA (Q58839) Flap structure-specific endonuclease (EC 3.1.-.-)| Length = 326 Score = 30.4 bits (67), Expect = 1.1 Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 6/98 (6%) Frame = +3 Query: 93 IRMEDLRGQTVAVD----TYSWLHKGALSCGD--RLCKGIPTTRHIEYCMHRVNLLRHHG 254 I EDL+G+ VA+D Y +L L G R KG T+ + ++LL + Sbjct: 14 ISFEDLKGKKVAIDGMNALYQFLTSIRLRDGSPLRNRKGEITSAYNGVFYKTIHLL-END 72 Query: 255 VKPILVFDGGFLPMKSEQEVKRARSRKENLERAREHEA 368 + PI VFDG P K +++ ++ R + + EA Sbjct: 73 ITPIWVFDGE--PPKLKEKTRKVRREMKEKAELKMKEA 108
>CHDM_DROME (O97159) Chromodomain helicase-DNA-binding protein Mi-2 homolog (EC| 3.6.1.-) (ATP-dependent helicase Mi-2) (dMi-2) Length = 1982 Score = 30.0 bits (66), Expect = 1.4 Identities = 14/47 (29%), Positives = 21/47 (44%) Frame = +3 Query: 180 LCKGIPTTRHIEYCMHRVNLLRHHGVKPILVFDGGFLPMKSEQEVKR 320 L G P ++E H +N L + F G F + E++VKR Sbjct: 901 LLTGTPLQNNLEELFHLLNFLSRDKFNDLQAFQGEFADVSKEEQVKR 947
>APBA3_MOUSE (O88888) Amyloid beta A4 precursor protein-binding family A member| 3 (Neuron-specific X11L2 protein) (Neuronal Munc18-1-interacting protein 3) (Mint-3) (Adapter protein X11gamma) Length = 571 Score = 29.3 bits (64), Expect = 2.3 Identities = 16/47 (34%), Positives = 26/47 (55%) Frame = -2 Query: 358 SLARSRFSFRDLARLTSCSLFIGRKPPSNTRIGFTPWCRNKLTLCMQ 218 SLA + + R++ RL+S +L I PP T + P R +L C++ Sbjct: 453 SLAACQAAVREVRRLSSVTLSIIHCPPVTTAVIRRPHVREQLGFCVE 499
>BEX1_HUMAN (Q9HBH7) Protein BEX1 (Brain-expressed X-linked protein 1)| Length = 125 Score = 28.5 bits (62), Expect = 4.0 Identities = 18/49 (36%), Positives = 25/49 (51%) Frame = +3 Query: 213 EYCMHRVNLLRHHGVKPILVFDGGFLPMKSEQEVKRARSRKENLERARE 359 EYC+ R N R +PIL + + E + AR R+EN+ER E Sbjct: 42 EYCVPRGNRRRFRVRQPILQYRWDMMHRLGEPQ---ARMREENMERIGE 87
>FREM1_MOUSE (Q684R7) FRAS1-related extracellular matrix protein 1 precursor| (QBRICK protein) Length = 2191 Score = 28.5 bits (62), Expect = 4.0 Identities = 14/38 (36%), Positives = 22/38 (57%) Frame = -1 Query: 116 PPQVLHPDGRHYRLELRQQTLDPHRRRRSAPLSLPVSL 3 PP HP+ RHY +EL + RSAP+++ +S+ Sbjct: 378 PPNSSHPERRHYTMELE---VYDFFFERSAPITVHISI 412
>BEX2_HUMAN (Q9BXY8) Protein BEX2 (Brain-expressed X-linked protein 2) (hBex2)| Length = 128 Score = 28.5 bits (62), Expect = 4.0 Identities = 18/49 (36%), Positives = 25/49 (51%) Frame = +3 Query: 213 EYCMHRVNLLRHHGVKPILVFDGGFLPMKSEQEVKRARSRKENLERARE 359 EYC+ R N R +PIL + + E + AR R+EN+ER E Sbjct: 45 EYCVPRGNRRRFRVRQPILQYRWDIMHRLGEPQ---ARMREENMERIGE 90
>BEX1_MACFA (Q2PG52) Protein BEX1 (Brain-expressed X-linked protein 1 homolog)| Length = 128 Score = 28.5 bits (62), Expect = 4.0 Identities = 18/49 (36%), Positives = 25/49 (51%) Frame = +3 Query: 213 EYCMHRVNLLRHHGVKPILVFDGGFLPMKSEQEVKRARSRKENLERARE 359 EYC+ R N R +PIL + + E + AR R+EN+ER E Sbjct: 45 EYCVPRGNRRRFRVRQPILQYRWDMMHRLGEPQ---ARMREENMERIGE 90
>DXS_ORYSA (O22567) Probable 1-deoxy-D-xylulose-5-phosphate synthase,| chloroplast precursor (EC 2.2.1.7) (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS) Length = 720 Score = 27.7 bits (60), Expect = 6.8 Identities = 15/55 (27%), Positives = 25/55 (45%) Frame = +3 Query: 210 IEYCMHRVNLLRHHGVKPILVFDGGFLPMKSEQEVKRARSRKENLERAREHEAAG 374 ++YC+ +L+ HG+K + V D F + ++R S E L E G Sbjct: 594 VQYCLAAASLVERHGLK-VTVADARFCKPLDQTLIRRLASSHEVLLTVEEGSIGG 647
>DGTL1_BIFLO (Q8G572) Deoxyguanosinetriphosphate triphosphohydrolase-like| protein Length = 475 Score = 27.7 bits (60), Expect = 6.8 Identities = 11/24 (45%), Positives = 15/24 (62%) Frame = -1 Query: 122 RLPPQVLHPDGRHYRLELRQQTLD 51 RL P++ HPDGR + L + LD Sbjct: 187 RLEPKIFHPDGRSAGVNLTRAALD 210
>INT2_CHICK (Q5ZKU4) Integrator complex subunit 2 (Int2)| Length = 1192 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/42 (26%), Positives = 21/42 (50%) Frame = -1 Query: 338 FLS*PCTFDLLFALHWQKASIKYKNWLHAMVPQQVNPMHAVL 213 FL C + LL + + K + K+W++ + + P+H L Sbjct: 543 FLPIHCIYQLLRSRSFTKHKVSIKDWIYRQLCETTTPLHPQL 584
>APBA3_RAT (O70248) Amyloid beta A4 precursor protein-binding family A member| 3 (Neuron-specific X11L2 protein) (Neuronal Munc18-1-interacting protein 3) (Mint-3) (Adapter protein X11gamma) Length = 569 Score = 27.3 bits (59), Expect = 8.9 Identities = 15/47 (31%), Positives = 25/47 (53%) Frame = -2 Query: 358 SLARSRFSFRDLARLTSCSLFIGRKPPSNTRIGFTPWCRNKLTLCMQ 218 SLA + + R++ R +S +L I PP T + P R +L C++ Sbjct: 451 SLAACQAAVREVRRHSSVTLSIIHCPPVTTAVIHRPHVREQLGFCVE 497 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,757,655 Number of Sequences: 219361 Number of extensions: 896018 Number of successful extensions: 2773 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 2715 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2762 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 1359926328 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
