>ref|XM_419250.1| PREDICTED: Gallus gallus similar to RAB-interacting factor
           (LOC421170), mRNA
          Length = 687

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 343 ggagccgcccggcggggggtgc 364
           ||||||||||||||||||||||
Sbjct: 530 ggagccgcccggcggggggtgc 509

>gb|AF498372.1| Amycolatopsis mediterranei alanine dehydrogenase (ald) gene,
           complete cds
          Length = 1784

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 328 ggaccaggtcgcgccggagccgcccg 353
           ||||| ||||||||||||||||||||
Sbjct: 512 ggacctggtcgcgccggagccgcccg 487

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                         
Query: 180     aggtccgccttcgctgccggccgccg 205
               |||||||||||||| |||||||||||
Sbjct: 7872831 aggtccgccttcgccgccggccgccg 7872856

>dbj|AP003201.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1066G12
          Length = 136263

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 180   aggtccgccttcgctgccggccgccg 205
             |||||||||||||| |||||||||||
Sbjct: 67777 aggtccgccttcgccgccggccgccg 67802

>emb|CR936257.1| Natronomonas pharaonis DSM 2160 complete genome
          Length = 2595221

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 337    cgcgccggagccgcccggcggg 358
              ||||||||||||||||||||||
Sbjct: 534688 cgcgccggagccgcccggcggg 534709

>emb|BX572607.1| Rhodopseudomonas palustris CGA009 complete genome; segment 15/16
          Length = 345012

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 337    cgcgccggagccgcccggcgg 357
              |||||||||||||||||||||
Sbjct: 226354 cgcgccggagccgcccggcgg 226334

>gb|AE004447.1| Pseudomonas aeruginosa PAO1, section 8 of 529 of the complete genome
          Length = 18088

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 211   cgcacctcgccttcgcccagc 231
             |||||||||||||||||||||
Sbjct: 14909 cgcacctcgccttcgcccagc 14889

>gb|AC109196.12| Mus musculus chromosome 5, clone RP23-313F5, complete sequence
          Length = 205369

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 26     cccgccggcggcccgagccc 45
              ||||||||||||||||||||
Sbjct: 156711 cccgccggcggcccgagccc 156692

>gb|AY437879.1| Homo sapiens PX ser/thr kinase v2 mRNA, complete cds, alternatively
            spliced
          Length = 2736

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 302  gacctgcccccctcaaaccc 321
            ||||||||||||||||||||
Sbjct: 2448 gacctgcccccctcaaaccc 2429

>gb|AC167561.3| Culex pipiens quinquefasciatus, clone Culex pipiens
             quinquefasciatus-3940117D9, complete sequence
          Length = 143368

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 337   cgcgccggagccgcccggcg 356
             ||||||||||||||||||||
Sbjct: 94947 cgcgccggagccgcccggcg 94966

>gb|AC132489.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0537C11,
             complete sequence
          Length = 146677

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    cgcatcgccacccgccggcg 35
             ||||||||||||||||||||
Sbjct: 21352 cgcatcgccacccgccggcg 21333

>gb|AC121362.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0009N21,
              complete sequence
          Length = 164925

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 16     cgcatcgccacccgccggcg 35
              ||||||||||||||||||||
Sbjct: 126062 cgcatcgccacccgccggcg 126043

>ref|XM_604162.2| PREDICTED: Bos taurus hypothetical LOC525806 (LOC525806), mRNA
          Length = 2748

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 185  cgccttcgctgccggccgccgcag 208
            ||||||||||||||||| ||||||
Sbjct: 1022 cgccttcgctgccggccaccgcag 1045

>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 339     cgccggagccgcccggcggg 358
               ||||||||||||||||||||
Sbjct: 2424422 cgccggagccgcccggcggg 2424441

>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 332     caggtcgcgccggagccgcccggc 355
               |||||||||||||||||| |||||
Sbjct: 1567416 caggtcgcgccggagccggccggc 1567439

>emb|AL591786.1|SME591786 Sinorhizobium meliloti 1021 complete chromosome; segment 5/12
          Length = 299350

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 174    ccggccaggtccgccttcgc 193
              ||||||||||||||||||||
Sbjct: 273400 ccggccaggtccgccttcgc 273419

>gb|AY281354.1| Uncultured Acidobacteria bacterium clone 38c7 genomic sequence
          Length = 39263

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 358   ggggtgcggcggaagcggaa 377
             ||||||||||||||||||||
Sbjct: 23920 ggggtgcggcggaagcggaa 23901

>gb|AC116036.3| Homo sapiens chromosome 3 clone RP11-359I18, complete sequence
          Length = 178119

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 302   gacctgcccccctcaaaccc 321
             ||||||||||||||||||||
Sbjct: 38628 gacctgcccccctcaaaccc 38609

>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome
          Length = 5064019

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 221     cttcgcccagcagcgccgca 240
               ||||||||||||||||||||
Sbjct: 4452520 cttcgcccagcagcgccgca 4452501

>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 339    cgccggagccgcccggcggg 358
              ||||||||||||||||||||
Sbjct: 604426 cgccggagccgcccggcggg 604445

>emb|AL669902.8| Mouse DNA sequence from clone RP23-459P8 on chromosome 11 Contains the
             5' end of the Rad51c gene for Rad51 homolog c (S.
             cerevisiae), the 5' end of the Tex14 gene for testis
             expressed gene 14, a cellular nucleic acid binding protein
             (Cnbp) pseudogene and five CpG islands, complete sequence
          Length = 137243

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   gccactgaccctcccccgcg 128
             ||||||||||||||||||||
Sbjct: 18116 gccactgaccctcccccgcg 18097

>emb|AL162754.2|NMA3Z2491 Neisseria meningitidis serogroup A strain Z2491 complete genome;
             segment 3/7
          Length = 311321

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 156   ccctctccttcgccctcacc 175
             ||||||||||||||||||||
Sbjct: 44459 ccctctccttcgccctcacc 44440

>emb|CR615699.1| full-length cDNA clone CS0DF010YG17 of Fetal brain of Homo sapiens
            (human)
          Length = 2151

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 302  gacctgcccccctcaaaccc 321
            ||||||||||||||||||||
Sbjct: 1859 gacctgcccccctcaaaccc 1840

>gb|AC013564.7| Homo sapiens chromosome 15, clone RP11-321F6, complete sequence
          Length = 210133

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 270    cggcccgcccctcccgcgcc 289
              ||||||||||||||||||||
Sbjct: 104469 cggcccgcccctcccgcgcc 104450

>dbj|AK131385.1| Homo sapiens cDNA FLJ16460 fis, clone BRCAN2018240
          Length = 2817

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 302  gacctgcccccctcaaaccc 321
            ||||||||||||||||||||
Sbjct: 2526 gacctgcccccctcaaaccc 2507

>dbj|AK124775.1| Homo sapiens cDNA FLJ42785 fis, clone BRAWH3006548
          Length = 3842

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 302  gacctgcccccctcaaaccc 321
            ||||||||||||||||||||
Sbjct: 3551 gacctgcccccctcaaaccc 3532

>emb|CR592387.1| full-length cDNA clone CS0DJ011YN01 of T cells (Jurkat cell line)
           Cot 10-normalized of Homo sapiens (human)
          Length = 824

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 302 gacctgcccccctcaaaccc 321
           ||||||||||||||||||||
Sbjct: 529 gacctgcccccctcaaaccc 510

>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 213     cacctcgccttcgcccagca 232
               ||||||||||||||||||||
Sbjct: 1383291 cacctcgccttcgcccagca 1383272

>gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV,
              complete sequence
          Length = 1466886

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 45     cggtcctctgccgctcgccc 64
              ||||||||||||||||||||
Sbjct: 756850 cggtcctctgccgctcgccc 756869

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 16      cgcatcgccacccgccggcg 35
               ||||||||||||||||||||
Sbjct: 9249407 cgcatcgccacccgccggcg 9249388

>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 341     ccggagccgcccggcggggg 360
               ||||||||||||||||||||
Sbjct: 7408938 ccggagccgcccggcggggg 7408957



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 210     ccgcacctcgccttcgcccagcagcgcc 237
               ||||| |||||| |||||||||||||||
Sbjct: 2834177 ccgcaactcgccgtcgcccagcagcgcc 2834204



 Score = 40.1 bits (20), Expect = 5.6
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 258     cgccccgtccgtcggcccgcccctcccgcgcc 289
               |||| |||| |||| |||||||||||||||||
Sbjct: 2472276 cgccgcgtcagtcgtcccgcccctcccgcgcc 2472307

>gb|AC135507.2| Homo sapiens chromosome 3 clone RP11-802O23, complete sequence
          Length = 171175

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 302    gacctgcccccctcaaaccc 321
              ||||||||||||||||||||
Sbjct: 126986 gacctgcccccctcaaaccc 126967

>emb|BX537600.1|HSM806302 Homo sapiens mRNA; cDNA DKFZp686O16145 (from clone DKFZp686O16145)
          Length = 4237

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 302  gacctgcccccctcaaaccc 321
            ||||||||||||||||||||
Sbjct: 3924 gacctgcccccctcaaaccc 3905

>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 218     cgccttcgcccagcagcgccgcac 241
               |||| |||||||||||||||||||
Sbjct: 1109357 cgccctcgcccagcagcgccgcac 1109334

>gb|AC145916.3| Gallus gallus BAC clone CH261-82F15 from chromosome unknown, complete
              sequence
          Length = 209299

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 338    gcgccggagccgcccggcgggggg 361
              ||||||| ||||||||||||||||
Sbjct: 131671 gcgccggggccgcccggcgggggg 131648

>emb|AL137938.1|HSM802129 Homo sapiens mRNA; cDNA DKFZp761M0223 (from clone DKFZp761M0223)
          Length = 3764

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 302  gacctgcccccctcaaaccc 321
            ||||||||||||||||||||
Sbjct: 3348 gacctgcccccctcaaaccc 3329


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,580,989
Number of Sequences: 3902068
Number of extensions: 2580989
Number of successful extensions: 58547
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57377
Number of HSP's gapped (non-prelim): 1170
length of query: 420
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 398
effective length of database: 17,147,199,772
effective search space: 6824585509256
effective search space used: 6824585509256
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)