ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl12e02 |
|---|---|
| Clone Library Name | barley_pub |
>Y2162_ARATH (O22224) Protein At2g41620| Length = 861 Score = 148 bits (373), Expect = 3e-36 Identities = 75/95 (78%), Positives = 86/95 (90%) Frame = +2 Query: 107 WSELLNTSTKLLEQAALTPHFPALQRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAR 286 W++LL++S+KLLEQAA + FP LQRNLDQLE LS KLKAKT+R EAPSQS++ATRLLAR Sbjct: 10 WTDLLHSSSKLLEQAAPSSQFPPLQRNLDQLEALSKKLKAKTLRNEAPSQSIAATRLLAR 69 Query: 287 EGINAEQLTRDLKSFELKTTFEDVFPSGSTSVEEY 391 EGINAEQL RDLKSFELKTTFEDVFP+ +TSVEEY Sbjct: 70 EGINAEQLARDLKSFELKTTFEDVFPAEATSVEEY 104
>NUP93_XENLA (Q7ZX96) Nuclear pore complex protein Nup93 (Nucleoporin Nup93) (93| kDa nucleoporin) (An4a) Length = 820 Score = 47.4 bits (111), Expect = 8e-06 Identities = 25/96 (26%), Positives = 51/96 (53%), Gaps = 1/96 (1%) Frame = +2 Query: 107 WSELLNTSTKLLEQAALTPHFPALQRNLDQLEVLSTKLKAKTI-RAEAPSQSLSATRLLA 283 + ELL + +L + P ++RNL +++ +L++KT+ R S ++ A+ LL Sbjct: 6 FGELLQQAEQLAAETEGVTELPHVERNLQEIQQAGERLRSKTMTRTSQESANVKASVLLG 65 Query: 284 REGINAEQLTRDLKSFELKTTFEDVFPSGSTSVEEY 391 G++ +++ L+S TTFE + P T ++ + Sbjct: 66 SRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGF 101
>NUP93_BRARE (Q7ZU29) Nuclear pore complex protein Nup93 (Nucleoporin Nup93) (93| kDa nucleoporin) (Dead eye protein) Length = 820 Score = 45.1 bits (105), Expect = 4e-05 Identities = 23/96 (23%), Positives = 50/96 (52%), Gaps = 1/96 (1%) Frame = +2 Query: 107 WSELLNTSTKLLEQAALTPHFPALQRNLDQLEVLSTKLKAKTI-RAEAPSQSLSATRLLA 283 + ELL + +L + P ++RNL +++ +L+++T+ R + + A+ LL Sbjct: 6 FGELLQQAEQLAAETEAVSELPHVERNLQEIQQAGERLRSRTLTRTSQDTADVKASILLG 65 Query: 284 REGINAEQLTRDLKSFELKTTFEDVFPSGSTSVEEY 391 G++ +++ L+S TTFE + P T ++ + Sbjct: 66 SRGLDIFHISQRLESLSAATTFEPLEPVKDTDIQGF 101
>NUP93_MOUSE (Q8BJ71) Nuclear pore complex protein Nup93 (Nucleoporin Nup93) (93| kDa nucleoporin) (CBP-interacting protein 4) Length = 819 Score = 44.7 bits (104), Expect = 5e-05 Identities = 23/96 (23%), Positives = 50/96 (52%), Gaps = 1/96 (1%) Frame = +2 Query: 107 WSELLNTSTKLLEQAALTPHFPALQRNLDQLEVLSTKLKAKTI-RAEAPSQSLSATRLLA 283 + ELL + +L + P ++RNL +++ +L+++T+ R + + A+ LL Sbjct: 6 FGELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRSRTLTRTSQETADVKASVLLG 65 Query: 284 REGINAEQLTRDLKSFELKTTFEDVFPSGSTSVEEY 391 G++ +++ L+S TTFE + P T ++ + Sbjct: 66 SRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGF 101
>NUP93_HUMAN (Q8N1F7) Nuclear pore complex protein Nup93 (Nucleoporin Nup93) (93| kDa nucleoporin) Length = 819 Score = 44.7 bits (104), Expect = 5e-05 Identities = 23/96 (23%), Positives = 50/96 (52%), Gaps = 1/96 (1%) Frame = +2 Query: 107 WSELLNTSTKLLEQAALTPHFPALQRNLDQLEVLSTKLKAKTI-RAEAPSQSLSATRLLA 283 + ELL + +L + P ++RNL +++ +L+++T+ R + + A+ LL Sbjct: 6 FGELLQQAEQLAAETEGISELPHVERNLQEIQQAGERLRSRTLTRTSQETADVKASVLLG 65 Query: 284 REGINAEQLTRDLKSFELKTTFEDVFPSGSTSVEEY 391 G++ +++ L+S TTFE + P T ++ + Sbjct: 66 SRGLDISHISQRLESLSAATTFEPLEPVKDTDIQGF 101
>ARGC_CORGL (Q59279) N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38)| (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase) (NAGSA dehydrogenase) Length = 347 Score = 35.0 bits (79), Expect = 0.043 Identities = 19/70 (27%), Positives = 31/70 (44%) Frame = +2 Query: 164 HFPALQRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAREGINAEQLTRDLKSFELKT 343 H P + +NL ++ K+ + A P L+ +EG+ AEQ + F + Sbjct: 212 HTPEIAQNLGEVSDKPVKVSFTPVLAPLPRGILTTATAPLKEGVTAEQARAVYEEFYAQE 271 Query: 344 TFEDVFPSGS 373 TF V P G+ Sbjct: 272 TFVHVLPEGA 281
>NP106_SCHPO (O14310) Nucleoporin npp106 (Nuclear pore protein npp106)| Length = 933 Score = 34.3 bits (77), Expect = 0.073 Identities = 20/68 (29%), Positives = 34/68 (50%) Frame = +2 Query: 155 LTPHFPALQRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAREGINAEQLTRDLKSFE 334 L P P +Q L+QLE + L++K + A LLA G+NAEQ + + S Sbjct: 40 LEPQVPVIQYGLNQLEEKARNLESKVLLTR--DGDTKAHYLLAESGMNAEQTRQKIYSIH 97 Query: 335 LKTTFEDV 358 + + ++ + Sbjct: 98 IHSPWDQL 105
>TSKS_HUMAN (Q9UJT2) Testis-specific serine kinase substrate (Testis-specific| kinase substrate) (STK22 substrate 1) Length = 592 Score = 31.2 bits (69), Expect = 0.62 Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 2/73 (2%) Frame = +2 Query: 140 LEQAALTPHFPALQRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAREGINAEQ--LT 313 ++Q LTP P+ QR ++ L + AK +RAEA S +L RL E + A+ LT Sbjct: 479 VKQRGLTPACPSCQRLHKKILELERQALAKHVRAEALSSTL---RLAQDEALRAKNLLLT 535 Query: 314 RDLKSFELKTTFE 352 +K E T + Sbjct: 536 DKMKPEEKMATLD 548
>UBP24_HUMAN (Q9UPU5) Ubiquitin carboxyl-terminal hydrolase 24 (EC 3.1.2.15)| (Ubiquitin thioesterase 24) (Ubiquitin-specific-processing protease 24) (Deubiquitinating enzyme 24) Length = 1870 Score = 30.8 bits (68), Expect = 0.81 Identities = 25/74 (33%), Positives = 37/74 (50%) Frame = +2 Query: 155 LTPHFPALQRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAREGINAEQLTRDLKSFE 334 L P PA+Q LDQL+ L K KT+ +E+ SQS + L +++Q + S Sbjct: 357 LIPTDPAIQEALDQLDSLGRK---KTLLSESSSQSSKSPSL------SSKQQHQPSASSI 407 Query: 335 LKTTFEDVFPSGST 376 L++ F P ST Sbjct: 408 LESLFRSFAPGMST 421
>DRL20_ARATH (Q9SH22) Putative disease resistance protein At1g63360| Length = 884 Score = 30.4 bits (67), Expect = 1.1 Identities = 20/67 (29%), Positives = 33/67 (49%) Frame = +2 Query: 188 LDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAREGINAEQLTRDLKSFELKTTFEDVFPS 367 L+ LE+L+T + + + + + LS +RLL G + L R L+S + T F Sbjct: 663 LEHLEILTTTIDPRAKQFLSSHRLLSHSRLLEIYGSSVSSLNRHLESLSVSTDKLREFQI 722 Query: 368 GSTSVEE 388 S S+ E Sbjct: 723 KSCSISE 729
>AMC1_ORYSA (P27940) Alpha-amylase isozyme C (EC 3.2.1.1) (1,4-alpha-D-glucan| glucanohydrolase) (Isozyme 1B) Length = 348 Score = 30.0 bits (66), Expect = 1.4 Identities = 12/24 (50%), Positives = 14/24 (58%) Frame = -2 Query: 293 SPRAPATWWRRATVTAPRRGSSWP 222 SPRA W+R+T P R S WP Sbjct: 192 SPRATPPTWQRSTSMPPSRASPWP 215
>DNAS1_CHICK (Q9YGI5) Deoxyribonuclease-1 precursor (EC 3.1.21.1)| (Deoxyribonuclease I) (DNase I) Length = 282 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/24 (54%), Positives = 14/24 (58%) Frame = -1 Query: 324 LRSLVSCSALIPSRASNLVAESDC 253 LRSL SC LIP A V +DC Sbjct: 206 LRSLSSCEWLIPDSADTTVTSTDC 229
>PHZI_PSEFL (Q51785) Autoinducer synthesis protein phzI| Length = 196 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 3/42 (7%) Frame = -1 Query: 351 SKVVLSSNDLRSLVSCSALIPSRASNL---VAESDCDGASAR 235 ++ +L+ N+ RS+V C+ LIP+ NL V C GA R Sbjct: 54 ARYLLAFNEHRSIVGCARLIPTTFPNLLEGVFSHACAGAPPR 95
>PDXT_METAC (Q8TQH7) Glutamine amidotransferase subunit pdxT (EC 2.6.-.-)| (Glutamine amidotransferase glutaminase subunit pdxT) Length = 199 Score = 28.1 bits (61), Expect = 5.3 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 8/61 (13%) Frame = +2 Query: 146 QAALTPHFPALQRNLDQ--LEVLSTKLKAKTIRAEAPS------QSLSATRLLAREGINA 301 Q A++ H AL+R L + +E ++K K I E +S + RLLAREGI Sbjct: 9 QGAVSEHVDALRRALAERGVEAEVVEIKHKGIVPECSGIVIPGGESTTLCRLLAREGIGE 68 Query: 302 E 304 E Sbjct: 69 E 69
>PDXT_METMA (Q8PUA4) Glutamine amidotransferase subunit pdxT (EC 2.6.-.-)| (Glutamine amidotransferase glutaminase subunit pdxT) Length = 199 Score = 27.7 bits (60), Expect = 6.9 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 8/61 (13%) Frame = +2 Query: 146 QAALTPHFPALQRNLDQ--LEVLSTKLKAKTIRAEAPS------QSLSATRLLAREGINA 301 Q A++ H AL+R L + +E ++K K I E +S + RLLAREGI Sbjct: 9 QGAVSEHVDALRRALKERGVEAEVVEIKHKGIVPECSGIVIPGGESTTLCRLLAREGIAE 68 Query: 302 E 304 E Sbjct: 69 E 69
>RPOA1_METTH (O27125) DNA-directed RNA polymerase subunit A' (EC 2.7.7.6)| Length = 870 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +1 Query: 223 GQDDPRRGAVTVALRHQVAGARGDQC 300 G DPR G + +LR + GA+G +C Sbjct: 45 GLMDPRLGVIDPSLRCRTCGAKGGEC 70
>METK_WOLSU (Q7M7Z2) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine| adenosyltransferase) (AdoMet synthetase) (MAT) Length = 386 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = -1 Query: 282 ASNLVAESDCDGASARIVLALSLVESTS 199 A NLVA CD A+ +I A+ +VE S Sbjct: 283 AKNLVASGVCDKATIQIAYAIGVVEPVS 310
>RPOB_MESFL (Q6F0L7) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1284 Score = 27.3 bits (59), Expect = 9.0 Identities = 18/53 (33%), Positives = 29/53 (54%) Frame = +2 Query: 143 EQAALTPHFPALQRNLDQLEVLSTKLKAKTIRAEAPSQSLSATRLLAREGINA 301 E+ + F ++ + LEV +TK A+ I +E P+ S +A + L EGI A Sbjct: 849 ERVIMEDKFTSVHIDEYVLEVRNTKQGAEEITSEIPNISDNAKKYLDNEGIVA 901
>ISPF_PORGI (Q7MXX0) 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC| 4.6.1.12) (MECPS) (MECDP-synthase) Length = 162 Score = 27.3 bits (59), Expect = 9.0 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 3/38 (7%) Frame = +2 Query: 128 STKLLEQAALTPHFPALQRNLD---QLEVLSTKLKAKT 232 +T EQ L PH P +QR L Q+EV LKA T Sbjct: 100 ATIAAEQPKLNPHIPDMQRVLAEVIQVEVSDISLKATT 137
>FAF_DROME (P55824) Probable ubiquitin carboxyl-terminal hydrolase FAF (EC| 3.1.2.15) (Ubiquitin thioesterase FAF) (Ubiquitin specific-processing protease FAF) (Deubiquitinating enzyme FAF) (Protein fat facets) Length = 2778 Score = 27.3 bits (59), Expect = 9.0 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 5/74 (6%) Frame = +2 Query: 134 KLLEQAALTPHF-PALQRNLDQLEVLSTKLKAKTIRAEAPSQSLS----ATRLLAREGIN 298 +LL A + +F P LD L+ + + + ++ E + ++ + RLLA Sbjct: 337 ELLMPATIAKYFMPTWNVVLDLLDSFTDEELKREVKPEGRNDYINGIVKSARLLASRLTG 396 Query: 299 AEQLTRDLKSFELK 340 E+L RDL+ F LK Sbjct: 397 QEELIRDLEMFRLK 410
>YKM1_SCHPO (Q9C0Z1) Putative transcriptional regulatory protein PB24D3.01| Length = 594 Score = 27.3 bits (59), Expect = 9.0 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 1/82 (1%) Frame = +2 Query: 116 LLNTSTKLLEQAALTPHFPALQRNL-DQLEVLSTKLKAKTIRAEAPSQSLSATRLLAREG 292 LL S++ L++ FP+L + D +++TKLK + R E PSQ S L + Sbjct: 104 LLKNSSEPLDRTE-RKDFPSLAMQIRDANSLVNTKLKEYSRRFELPSQKTSFDDLFSSTF 162 Query: 293 INAEQLTRDLKSFELKTTFEDV 358 N + +D+ E FE+V Sbjct: 163 PNFDAAFKDIPDKE--WAFENV 182 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,829,347 Number of Sequences: 219361 Number of extensions: 543050 Number of successful extensions: 1897 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 1880 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1897 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 1365190992 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
