Clone Information

BLAST Search Result

Clone Name	bastl12d11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	TNPO3_HUMAN (Q9Y5L0) Transportin 3 (Transportin-SR) (TRN-SR) (Im...	37	0.011
2	TNPO3_MOUSE (Q6P2B1) Transportin 3	37	0.011
3	EXTN_SORBI (P24152) Extensin precursor (Proline-rich glycoprotein)	34	0.096
4	KI13B_HUMAN (Q9NQT8) Kinesin-like protein KIF13B (Kinesin-like p...	33	0.21
5	EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline...	32	0.28
6	BAGS_BOMMO (Q9BLJ6) BAG domain-containing protein Samui	32	0.48
7	PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein	31	0.63
8	KAR9_YEAST (P32526) Karyogamy protein KAR9 (Cortical protein KAR9)	31	0.63
9	YNR7_SCHPO (Q9USZ2) Hypothetical protein C11G11.07 in chromosome II	31	0.82
10	SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1...	30	1.4
11	IDI2_CHLCH (Q3AQM4) Isopentenyl-diphosphate delta-isomerase (EC ...	30	1.4
12	EXTN_MAIZE (P14918) Extensin precursor (Proline-rich glycoprotein)	30	1.8
13	SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Spli...	30	1.8
14	SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Sp...	30	1.8
15	SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Sp...	30	1.8
16	SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Sp...	30	1.8
17	SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Sp...	29	3.1
18	SYP2L_HUMAN (Q9H987) Synaptopodin 2-like protein	29	3.1
19	SGS3_DROME (P02840) Salivary glue protein Sgs-3 precursor	29	3.1
20	CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22	29	3.1
21	SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1	28	4.1
22	PEXLP_TOBAC (Q03211) Pistil-specific extensin-like protein precu...	28	5.3
23	NO75_LUPLU (Q06841) Early nodulin 75 protein (N-75) (NGM-75) (Fr...	28	5.3
24	PACC_ASPPA (Q96UW0) pH-response transcription factor pacC/RIM101	28	5.3
25	PACC_ASPOR (Q9HFB3) pH-response transcription factor pacC/RIM101	28	5.3
26	SWR1_GIBZE (Q4IAK7) Helicase SWR1 (EC 3.6.1.-)	28	5.3
27	MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)	28	5.3
28	PDXH_RHILO (Q986A0) Pyridoxamine 5'-phosphate oxidase (EC 1.4.3....	28	5.3
29	REEP2_MOUSE (Q8VCD6) Receptor expression-enhancing protein 2	28	6.9
30	WBP11_BRARE (Q6P0D5) WW domain-binding protein 11 (WBP-11)	28	6.9
31	MTR10_YEAST (Q99189) mRNA transport regulator MTR10	27	9.0
32	CGLH_XANMA (P37126) Chorionicgonadotropic hormone-like protein (...	27	9.0
33	SPTA3_MOUSE (Q9D9T6) Spermatogenesis-associated protein 3 (Testi...	27	9.0
34	DREB_RAT (Q07266) Drebrin (Developmentally-regulated brain protein)	27	9.0
35	CWC22_MAGGR (Q52B63) Pre-mRNA-splicing factor CWC22	27	9.0
36	CT111_MOUSE (Q9D722) Protein C20orf111 homolog	27	9.0
37	LTBP3_MOUSE (Q61810) Latent transforming growth factor beta-bind...	27	9.0
38	DREB_MOUSE (Q9QXS6) Drebrin (Developmentally-regulated brain pro...	27	9.0
39	IPO13_RAT (Q9JM04) Importin-13 (Imp13) (Late gestation lung 2 pr...	27	9.0
40	IPO13_MOUSE (Q8K0C1) Importin-13 (Imp13)	27	9.0
41	IPO13_HUMAN (O94829) Importin-13 (Imp13) (Ran-binding protein 13...	27	9.0

>TNPO3_HUMAN (Q9Y5L0) Transportin 3 (Transportin-SR) (TRN-SR) (Importin 12)|
          Length = 975

 Score = 37.0 bits (84), Expect = 0.011
 Identities = 24/67 (35%), Positives = 31/67 (46%)
 Frame = +2

Query: 125 AVHALNHASHPSARLAANQWLLGLQRSPQAWXXXXXXXXXXDHPAPSVDLLFFAAQMLRR 304
           AV AL H   PS +  A+ WL  LQRS  AW                V+  +FAAQ ++ 
Sbjct: 14  AVQALYHDPDPSGKERASFWLGELQRSVHAWEISDQLLQIRQ----DVESCYFAAQTMKM 69

Query: 305 MIQSPDY 325
            IQ+  Y
Sbjct: 70  KIQTSFY 76

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>TNPO3_MOUSE (Q6P2B1) Transportin 3|
          Length = 923

 Score = 37.0 bits (84), Expect = 0.011
 Identities = 24/67 (35%), Positives = 31/67 (46%)
 Frame = +2

Query: 125 AVHALNHASHPSARLAANQWLLGLQRSPQAWXXXXXXXXXXDHPAPSVDLLFFAAQMLRR 304
           AV AL H   PS +  A+ WL  LQRS  AW                V+  +FAAQ ++ 
Sbjct: 14  AVQALYHDPDPSGKERASFWLGELQRSVHAWEISDQLLQIRQ----DVESCYFAAQTMKM 69

Query: 305 MIQSPDY 325
            IQ+  Y
Sbjct: 70  KIQTSFY 76

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>EXTN_SORBI (P24152) Extensin precursor (Proline-rich glycoprotein)|
          Length = 283

 Score = 33.9 bits (76), Expect = 0.096
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 21  PTRIHPPTHAPTSQPPGRQRWTSPSHRTS-RLSSPRPCTHLITPRIPPHV*PPT 179
           P    PPTH P+ +PP   + T P +  S +   P P T+  TP+ PP   PPT
Sbjct: 174 PPVTKPPTHTPSPKPP-TSKPTPPVYTPSPKPPKPSPPTYTPTPK-PPATKPPT 225



 Score = 33.9 bits (76), Expect = 0.096
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = +3

Query: 21  PTRIHPPTHAPTSQPPGRQRWTSPSHRTSRLSSPRPCTHLITPRIPPHV*PPT 179
           P    PPT+ P+ +PP  +  T P+ +      P P  +  +P+ PP   PPT
Sbjct: 109 PKASTPPTYTPSPKPPATKPPTYPTPKPPATKPPTPPVYTPSPK-PPVTKPPT 160



 Score = 33.5 bits (75), Expect = 0.13
 Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 21  PTRIHPPTHAPTSQPPGRQRWTS-PSHRTSRLSSPRPCTHLITPRIPPHV*PP 176
           P +  PPT+ PT +PP  +  TS P+H      +P P  H  T +  P   PP
Sbjct: 204 PPKPSPPTYTPTPKPPATKPPTSTPTHPKPTPHTPYPQAHPPTYKPAPKPSPP 256

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>KI13B_HUMAN (Q9NQT8) Kinesin-like protein KIF13B (Kinesin-like protein GAKIN)|
          Length = 1826

 Score = 32.7 bits (73), Expect = 0.21
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 36   PPTHAPTSQPPGRQRWTSPSHRTSRLSSPRP 128
            PPT  P  +PPG Q+  SP      L +P P
Sbjct: 1612 PPTAVPAEEPPGPQQLVSPGRERPDLEAPAP 1642

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>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich|
           glycoprotein)
          Length = 620

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
 Frame = +3

Query: 39  PTHAPTSQPPGRQRWTSPSHRTSRLSSPRPCTHLITPRI---PPH 164
           P  APT+ PP R    SP H   R + P P    + P +   PPH
Sbjct: 51  PPSAPTTTPPSRGHVPSPRHAPPRHAYPPPSHGHLPPSVGGPPPH 95

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>BAGS_BOMMO (Q9BLJ6) BAG domain-containing protein Samui|
          Length = 677

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 36  PPTHAPTSQPPGRQRWTSPSHRTSRLSSPRPCTHLIT 146
           PP  +P  QPP ++  T P  +T + SS  P T +++
Sbjct: 350 PPPKSPQQQPPPQREQTPPQPKTQQPSSNDPITQILS 386

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>PRF1_LYCES (Q00451) 36.4 kDa proline-rich protein|
          Length = 346

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
 Frame = +3

Query: 15  RFPTRIHPP-THAPTSQPPGRQRWTSPSHRTSRLSSPRPCTHL---ITPRIPPHV*PPT 179
           + P ++ PP T  P  +PP   +           S+P+   ++    TP+ PPHV PP+
Sbjct: 21  KLPPKVKPPSTQPPHVKPPSTPKHPKDPPHVKPPSTPKQPPYVKPPTTPKHPPHVKPPS 79

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>KAR9_YEAST (P32526) Karyogamy protein KAR9 (Cortical protein KAR9)|
          Length = 644

 Score = 31.2 bits (69), Expect = 0.63
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 36  PPTHAPTSQPPGRQRWTSPSHRTSRLSSPRPCTHLITPR 152
           PPT   T   P  Q W   + R +RL  P P + L++PR
Sbjct: 599 PPTKITT---PNSQVWVPSTRRRTRLRPPTPLSQLLSPR 634

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>YNR7_SCHPO (Q9USZ2) Hypothetical protein C11G11.07 in chromosome II|
          Length = 955

 Score = 30.8 bits (68), Expect = 0.82
 Identities = 21/65 (32%), Positives = 30/65 (46%)
 Frame = +2

Query: 116 LAAAVHALNHASHPSARLAANQWLLGLQRSPQAWXXXXXXXXXXDHPAPSVDLLFFAAQM 295
           L +A+  L   +    +L AN +L   Q+SP AW          D    S++   FAAQ 
Sbjct: 4   LLSALATLYANTDREQKLQANNYLEEFQKSPAAWQICFSILNQDD---SSIEAKLFAAQT 60

Query: 296 LRRMI 310
           LR+ I
Sbjct: 61  LRQKI 65

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>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +3

Query: 27  RIHPPTHAPTSQPPGRQRWTSPSHRTSRLSSPRPCTHLITPRIPP 161
           R H P+ + +  P  RQ+ TSP  R  R  SP P     +P   P
Sbjct: 521 RRHSPSRSASPSPRKRQKETSPRGRRRRSPSPPPTRRRRSPSPAP 565



 Score = 28.5 bits (62), Expect = 4.1
 Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
 Frame = +3

Query: 15  RFPTRIHPPTHAPTSQPPGRQRWTSPSHRTSRLSSPR----PCTHLITPRIPP 161
           R P+   PP    T  PP R+R  SP  R  R  SPR    P     +P  PP
Sbjct: 559 RSPSPAPPPRRRRTPTPPPRRRTPSPPPR-RRSPSPRRYSPPIQRRYSPSPPP 610

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>IDI2_CHLCH (Q3AQM4) Isopentenyl-diphosphate delta-isomerase (EC 5.3.3.2) (IPP|
           isomerase) (Isopentenyl pyrophosphate isomerase)
          Length = 357

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 80  MDVAESPDIQAQLAAAVHALNHASHPSARLAA-NQWLLGLQ 199
           MDVA+S  + AQLAA+   L HA H     A   QWL  L+
Sbjct: 295 MDVAKSLAMGAQLAASARHLLHALHAGTLTATIEQWLNDLK 335

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>EXTN_MAIZE (P14918) Extensin precursor (Proline-rich glycoprotein)|
          Length = 267

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
 Frame = +3

Query: 36  PPTHAPTSQPPGRQRWTSPSHRTSRLSSPRPCTHLITPRI------PPHV*PPT 179
           PPT+ P+ +PP  +  T      +   SP+P T   TP        PP   PPT
Sbjct: 71  PPTYTPSPKPPATKPPTPKPTPPTYTPSPKPPTPKPTPPTYTPSPKPPATKPPT 124



 Score = 29.6 bits (65), Expect = 1.8
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
 Frame = +3

Query: 36  PPTHAPTSQPPGRQRWTSPSHRTSRLSSPRPCTHLITPRI------PPHV*PPT 179
           PPT+ P+ +PP  +  T      +   SP+P T   TP        PP   PPT
Sbjct: 34  PPTYTPSPKPPASKPPTPKPTPPTYTPSPKPPTPKPTPPTYTPSPKPPATKPPT 87



 Score = 28.9 bits (63), Expect = 3.1
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +3

Query: 36  PPTHAPTSQPPGRQRWTSPSHRTSRLSSPRPCTHLITPRIPPHV*PPT 179
           PPT+ P+ +PP     T P         P P T+  TP+ PP   PPT
Sbjct: 212 PPTYTPSPKPPA----TKPP-----TPKPTPPTYTPTPK-PPATKPPT 249



 Score = 28.9 bits (63), Expect = 3.1
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +3

Query: 36  PPTHAPTSQPPGRQRWTSPSHRTS-RLSSPRPCTHLITPR-IPPHV*PPT 179
           PPT+ P+ +PP   + T P++  S +  +P+P     TP   PP   PPT
Sbjct: 180 PPTYTPSPKPP-TPKPTPPTYTPSPKPPTPKPTPPTYTPSPKPPATKPPT 228



 Score = 28.5 bits (62), Expect = 4.1
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +3

Query: 36  PPTHAPTSQPPGRQRWTSPSHRTSRLSSPRPCTHLIT-PRIPPHV*PPT 179
           PPT+ P+ +PP  +  T      +   SP+P T   T P   P   PPT
Sbjct: 108 PPTYTPSPKPPATKPPTPKPTPPTYTPSPKPPTPKPTPPTYTPSPKPPT 156

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>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa)
          Length = 220

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +1

Query: 22  PPESIHLRTRPPPSRLGGSDGRRR 93
           PP+S H R  PPP R GG    RR
Sbjct: 94  PPDSHHSRRGPPPRRYGGGGYGRR 117

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>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa)
          Length = 220

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +1

Query: 22  PPESIHLRTRPPPSRLGGSDGRRR 93
           PP+S H R  PPP R GG    RR
Sbjct: 94  PPDSHHSRRGPPPRRYGGGGYGRR 117

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>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa) (PR264
           protein) (Putative myelin regulatory factor 1) (MRF-1)
          Length = 220

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +1

Query: 22  PPESIHLRTRPPPSRLGGSDGRRR 93
           PP+S H R  PPP R GG    RR
Sbjct: 94  PPDSHHSRRGPPPRRYGGGGYGRR 117

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>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa) (PR264
           protein)
          Length = 220

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +1

Query: 22  PPESIHLRTRPPPSRLGGSDGRRR 93
           PP+S H R  PPP R GG    RR
Sbjct: 94  PPDSHHSRRGPPPRRYGGGGYGRR 117

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>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor|
           SC35) (SC-35) (Splicing component, 35 kDa) (PR264
           protein)
          Length = 221

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +1

Query: 22  PPESIHLRTRPPPSRLGGSDGRRR 93
           PP+S H R  PPP R G S   RR
Sbjct: 95  PPDSHHSRRGPPPRRYGSSGYGRR 118

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>SYP2L_HUMAN (Q9H987) Synaptopodin 2-like protein|
          Length = 977

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
 Frame = +3

Query: 6   ISSRFPTRIHP-----PTHAPTSQPPGRQRWTSPSHRTSRLSSPRPCTHLITPRIPPHV* 170
           +SS+ PT +       P+HAP S  P   R + P   TS L  P P   +     P    
Sbjct: 510 LSSQGPTPLPSFTSGVPSHAPVSGSPSTPRSSGPVTATSSLYIPAPSRPVTPGGAPEPPA 569

Query: 171 PPT 179
           PP+
Sbjct: 570 PPS 572

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>SGS3_DROME (P02840) Salivary glue protein Sgs-3 precursor|
          Length = 307

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +3

Query: 21  PTRIHPPTHAPTSQPPGRQRWTSPSHRTSRLSSPRPC 131
           PT   P T  PT+  P   + T+    T++ ++P+PC
Sbjct: 223 PTTTKPTTTKPTTTKPTTTKPTTTKPTTTKPTTPKPC 259

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>CWC22_NEUCR (Q7RX84) Pre-mRNA-splicing factor cwc-22|
          Length = 1010

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 14/71 (19%)
 Frame = +3

Query: 6   ISSRFPTRIHPPTHAPT--SQPPGRQ-------RWTSPSHRTSRLSSPR-----PCTHLI 143
           +S R     HP + +PT  SQ P R+       R  SP+ R  R SSPR     P  H  
Sbjct: 71  LSPRDQPHSHPRSRSPTPRSQSPSRRSVRSPSPRQGSPARRVDRSSSPRARSPPPRRHSR 130

Query: 144 TPRIPPHV*PP 176
           +P +     PP
Sbjct: 131 SPPLRGQPPPP 141



 Score = 27.3 bits (59), Expect = 9.0
 Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = +3

Query: 12  SRFPTRIHPPTHAPTSQPP---GRQRWTSPSHRTSRLSSPRP 128
           SR P+R    T +P + PP   GR    S S   SR  SP P
Sbjct: 814 SRSPSRSRSRTRSPAAAPPIRRGRSGTRSRSRSYSRSPSPPP 855

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>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 4/53 (7%)
 Frame = +3

Query: 15  RFPTRIHPPTHAPTSQPPGRQRWTSPSHRTSRLSSPR----PCTHLITPRIPP 161
           R P+   PP    T  PP R+R  SP  R  R  SPR    P     +P  PP
Sbjct: 573 RSPSPAPPPRRRRTPTPPPRRRTPSPPPR-RRSPSPRRYSPPIQRRYSPSPPP 624

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>PEXLP_TOBAC (Q03211) Pistil-specific extensin-like protein precursor (PELP)|
          Length = 426

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
 Frame = +3

Query: 21  PTRIHPPTHAPTSQPPGRQRWTSPSHRTSRLSSPRP---CTHLITPRIPPHV*PP 176
           P  +  P+ +P +QPP +Q    P  + S L  P P      ++TP   P   PP
Sbjct: 201 PPPVKAPSPSPATQPPTKQPPPPPRAKKSPLLPPPPPVAYPPVMTPSPSPAAEPP 255

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>NO75_LUPLU (Q06841) Early nodulin 75 protein (N-75) (NGM-75) (Fragment)|
          Length = 434

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 9/61 (14%)
 Frame = +3

Query: 21  PTRIHPPTHA--PTSQPPGRQRWTS-------PSHRTSRLSSPRPCTHLITPRIPPHV*P 173
           P  +HPP H   P  +PP  +   +       P H    +  P P T       PPHV P
Sbjct: 12  PPIVHPPPHEKPPLFEPPFEKPPPAHPPPVHPPPHEKPPIEYPPPHTKPPIEYPPPHVKP 71

Query: 174 P 176
           P
Sbjct: 72  P 72

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>PACC_ASPPA (Q96UW0) pH-response transcription factor pacC/RIM101|
          Length = 662

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +3

Query: 9   SSRFPTRIHPPTHAPTSQPPGRQRWTSPSHRTSRLSSPRPCTHLITPRI-PPH 164
           +S  P   +P TH+PT  P      T PS   S  S   P +   T R+ PPH
Sbjct: 394 TSAGPMMANPATHSPTGTP----ALTPPSSAQSYTSGRSPISLPSTSRVSPPH 442

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>PACC_ASPOR (Q9HFB3) pH-response transcription factor pacC/RIM101|
          Length = 662

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +3

Query: 9   SSRFPTRIHPPTHAPTSQPPGRQRWTSPSHRTSRLSSPRPCTHLITPRI-PPH 164
           +S  P   +P TH+PT  P      T PS   S  S   P +   T R+ PPH
Sbjct: 394 TSAGPIMANPATHSPTGTP----ALTPPSSAQSYTSGRSPISLPSTSRVSPPH 442

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>SWR1_GIBZE (Q4IAK7) Helicase SWR1 (EC 3.6.1.-)|
          Length = 1691

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 18/59 (30%), Positives = 20/59 (33%), Gaps = 22/59 (37%)
 Frame = +3

Query: 33  HPPTHAPTSQPPGRQRWTSP----------------------SHRTSRLSSPRPCTHLI 143
           H P   P + PP R   TSP                       H TSR  SP+P  H I
Sbjct: 743 HSPATEPATNPPSRVHSTSPPATSETKPSELDTASTEEMAVDKHDTSRSPSPQPSNHKI 801

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>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)|
          Length = 5179

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +3

Query: 36   PPTHAPTSQPPGRQRWTSPSHRTSRLSSPRPCTHLITPRIPPHV*PPT 179
            PPT   T+ PP     T+PS  T+  ++P P T    P   P + PPT
Sbjct: 1588 PPTITTTTPPP----TTTPSPPTTTTTTPPPTTTPSPPTTTP-ITPPT 1630



 Score = 27.3 bits (59), Expect = 9.0
 Identities = 19/53 (35%), Positives = 23/53 (43%)
 Frame = +3

Query: 21   PTRIHPPTHAPTSQPPGRQRWTSPSHRTSRLSSPRPCTHLITPRIPPHV*PPT 179
            PT +  P+   T  PP     T P   T   SSP     L T  +PP + PPT
Sbjct: 1725 PTTMTTPSPTTTPSPPTTTMTTLPPTTT---SSP-----LTTTPLPPSITPPT 1769

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>PDXH_RHILO (Q986A0) Pyridoxamine 5'-phosphate oxidase (EC 1.4.3.5) (PNP/PMP|
           oxidase) (PNPOx)
          Length = 205

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = -2

Query: 303 RRSIWAAKKSRSTEGAG*SAEARSETDSAHACGERCRPRSHWLAAR 166
           R   WA+K+SR  E      +A +E  + +A GE  RP+ HW   R
Sbjct: 124 RIGAWASKQSRPLESRFALEKAVAEYTARYAIGEIPRPK-HWSGFR 168

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>REEP2_MOUSE (Q8VCD6) Receptor expression-enhancing protein 2|
          Length = 254

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +1

Query: 4   KSPLASPPESIHLRTRPPPSRLGGSD 81
           K P A PP S  L+TRP     GG D
Sbjct: 227 KVPRAEPPASKTLKTRPKKKSSGGGD 252

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>WBP11_BRARE (Q6P0D5) WW domain-binding protein 11 (WBP-11)|
          Length = 640

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +3

Query: 36  PPTHAPTSQPPGRQRWTSPSHRTSRLSSPRPCTHLITPRIPP 161
           PP+  P   PPG   +  P    S L  P P   L+ P  PP
Sbjct: 391 PPSGPPPGPPPGAPPFLRPPGLPSALRGPMP--RLLPPGPPP 430

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>MTR10_YEAST (Q99189) mRNA transport regulator MTR10|
          Length = 972

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 21/77 (27%), Positives = 32/77 (41%)
 Frame = +2

Query: 80  MDVAESPDIQAQLAAAVHALNHASHPSARLAANQWLLGLQRSPQAWXXXXXXXXXXDHPA 259
           MD  +  DI+     A+  ++  +    +  A Q+L   QRS  AW          D   
Sbjct: 1   MDNLQVSDIET----ALQCISSTASQDDKNKALQFLEQFQRSTVAWSICNEILSKEDPTN 56

Query: 260 PSVDLLFFAAQMLRRMI 310
             ++L  FAAQ LR  +
Sbjct: 57  ALLELNIFAAQTLRNKV 73

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>CGLH_XANMA (P37126) Chorionicgonadotropic hormone-like protein (CG-like|
           protein)
          Length = 443

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 21  PTRIHPPTHAPTSQPPGRQRWTSPSHRTSRLSSPRPCTHLIT 146
           P  ++P   APT+ P G   + S + RT R      C H ++
Sbjct: 133 PRGVNPVPSAPTAPPAGLAAFPSANRRTERCLVWIACVHRLS 174

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>SPTA3_MOUSE (Q9D9T6) Spermatogenesis-associated protein 3 (Testis spermatocyte|
           apoptosis-related protein 1) (Testis and spermatogenesis
           cell-related protein 1) (mTSARG1)
          Length = 193

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +3

Query: 9   SSRFPTRIHPPTHAPTSQPPGRQRWTSPSHRTSRLSSPRPCTHLITP 149
           S R    I P T + +SQ P  +   S     S  S P+PC    TP
Sbjct: 11  SRRRRNSISPQTSSDSSQQPSSETPPSCPEPASPPSKPQPCQESTTP 57

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>DREB_RAT (Q07266) Drebrin (Developmentally-regulated brain protein)|
          Length = 706

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 23/79 (29%), Positives = 27/79 (34%)
 Frame = +3

Query: 54  TSQPPGRQRWTSPSHRTSRLSSPRPCTHLITPRIPPHV*PPTXXXXXXXXXXXXXXXXXX 233
           +S PP         HRT  LSS  PC+HL + R       PT                  
Sbjct: 339 SSSPPRTPFPYITCHRTPNLSSSLPCSHLDSHRRMAPTPIPT-------RSPSDSSTAST 391

Query: 234 XXXXXIIRPLPSIYSSSPP 290
                I R L  + SS PP
Sbjct: 392 PITEQIERALDEVTSSQPP 410

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>CWC22_MAGGR (Q52B63) Pre-mRNA-splicing factor CWC22|
          Length = 907

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = +3

Query: 12  SRFPTRIHPPTHAPTSQPPGRQRWTSPSHRT-----SRLSSPRPCTHLITP 149
           SR PT   PP     +Q  GRQR  +PS R+     SR  SPR  ++  +P
Sbjct: 744 SRSPT---PPRRQAPAQQRGRQRSYTPSDRSRSRSYSRSRSPRGRSYTRSP 791

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>CT111_MOUSE (Q9D722) Protein C20orf111 homolog|
          Length = 291

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 4   KSPLASPPESIHLRTRPPPS 63
           KSP+  PP+ IH  T  PPS
Sbjct: 83  KSPVLHPPKFIHCSTTAPPS 102

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>LTBP3_MOUSE (Q61810) Latent transforming growth factor beta-binding protein 3|
           precursor (LTBP-3)
          Length = 1268

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +3

Query: 54  TSQPP-GRQRWTSPSHRTSRLSSPRPCTHLITPRIPP 161
           T  PP   +R    SH T+  S PRP   LI+   PP
Sbjct: 509 TMDPPVSEERSVQQSHPTTTTSPPRPYPELISRPSPP 545

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>DREB_MOUSE (Q9QXS6) Drebrin (Developmentally-regulated brain protein)|
          Length = 705

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 23/79 (29%), Positives = 27/79 (34%)
 Frame = +3

Query: 54  TSQPPGRQRWTSPSHRTSRLSSPRPCTHLITPRIPPHV*PPTXXXXXXXXXXXXXXXXXX 233
           +S PP         HRT  LSS  PC+HL + R       PT                  
Sbjct: 341 SSSPPRTPFPYITCHRTPNLSSSLPCSHLDSHRRMAPTPIPT-------RSPSDSSTAST 393

Query: 234 XXXXXIIRPLPSIYSSSPP 290
                I R L  + SS PP
Sbjct: 394 PIAEQIERALDEVTSSQPP 412

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>IPO13_RAT (Q9JM04) Importin-13 (Imp13) (Late gestation lung 2 protein)|
          Length = 963

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 125 AVHALNHASHPSARLAANQWLLGLQRSPQAW 217
           A+H L +  +   +  A +WL+  Q SPQAW
Sbjct: 29  ALHQLYYDPNIENKNLAQKWLMQAQVSPQAW 59

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>IPO13_MOUSE (Q8K0C1) Importin-13 (Imp13)|
          Length = 963

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 125 AVHALNHASHPSARLAANQWLLGLQRSPQAW 217
           A+H L +  +   +  A +WL+  Q SPQAW
Sbjct: 29  ALHQLYYDPNIDNKNLAQKWLMQAQVSPQAW 59

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>IPO13_HUMAN (O94829) Importin-13 (Imp13) (Ran-binding protein 13) (RanBP13)|
           (Karyopherin 13) (Kap13)
          Length = 963

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 125 AVHALNHASHPSARLAANQWLLGLQRSPQAW 217
           A+H L +  +   +  A +WL+  Q SPQAW
Sbjct: 29  ALHQLYYDPNIENKNLAQKWLMQAQVSPQAW 59


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,492,261
Number of Sequences: 219361
Number of extensions: 745989
Number of successful extensions: 3033
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 2694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2995
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 1375720320
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result