>gb|AC108223.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0019A16,
              complete sequence
          Length = 175425

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                            
Query: 173    gccaaccagtggctcctcggcctacagcgctcgccgcaggcgtggg 218
              |||||||||||||||||||  || ||||| ||||||||||||||||
Sbjct: 148218 gccaaccagtggctcctcgcgctgcagcggtcgccgcaggcgtggg 148173



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                      
Query: 275    ctcttcttcgccgcccagatgcttcgccggatgatccagt 314
              |||||||||||||| |||||||| ||  ||| ||||||||
Sbjct: 148110 ctcttcttcgccgcgcagatgctccggaggaagatccagt 148071

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                              
Query: 173      gccaaccagtggctcctcggcctacagcgctcgccgcaggcgtggg 218
                |||||||||||||||||||  || ||||| ||||||||||||||||
Sbjct: 19279430 gccaaccagtggctcctcgcgctgcagcggtcgccgcaggcgtggg 19279385



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                        
Query: 275      ctcttcttcgccgcccagatgcttcgccggatgatccagt 314
                |||||||||||||| |||||||| ||  ||| ||||||||
Sbjct: 19279322 ctcttcttcgccgcgcagatgctccggaggaagatccagt 19279283

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 60.0 bits (30), Expect = 6e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                              
Query: 173      gccaaccagtggctcctcggcctacagcgctcgccgcaggcgtggg 218
                |||||||||||||||||||  || ||||| ||||||||||||||||
Sbjct: 19438979 gccaaccagtggctcctcgcgctgcagcggtcgccgcaggcgtggg 19438934



 Score = 40.1 bits (20), Expect = 5.3
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                        
Query: 275      ctcttcttcgccgcccagatgcttcgccggatgatccagt 314
                |||||||||||||| |||||||| ||  ||| ||||||||
Sbjct: 19438871 ctcttcttcgccgcgcagatgctccggaggaagatccagt 19438832

>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                             
Query: 342     ccgcgcagctcctcgacgcgctccttgtcg 371
               ||||||||| |||||||||||||| |||||
Sbjct: 1036561 ccgcgcagcacctcgacgcgctccatgtcg 1036532

>emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete genome; segment 6/16
          Length = 349876

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 340    cgccgcgcagctcctcgacgcgctc 364
              ||||||||||| |||||||||||||
Sbjct: 213185 cgccgcgcagcacctcgacgcgctc 213161

>emb|BX640430.1| Bordetella parapertussis strain 12822, complete genome; segment 8/14
          Length = 348014

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 340    cgccgcgcagctcctcgacgcgctc 364
              ||||||||||| |||||||||||||
Sbjct: 125211 cgccgcgcagcacctcgacgcgctc 125187

>gb|U77671.1|BBU77671 Bordetella bronchiseptica putative ferric siderophore receptor
           (bfrB) gene, complete cds
          Length = 2670

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 340 cgccgcgcagctcctcgacgcgctc 364
           ||||||||||| |||||||||||||
Sbjct: 715 cgccgcgcagcacctcgacgcgctc 691

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 341     gccgcgcagctcctcgacgcgctcc 365
               |||||||||| ||||||||||||||
Sbjct: 5454499 gccgcgcagcacctcgacgcgctcc 5454523

>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 112    tcagctcgccgcggccgtgca 132
              |||||||||||||||||||||
Sbjct: 370836 tcagctcgccgcggccgtgca 370856

>ref|XM_473266.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1338

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 116 ctcgccgcggccgtgcacgc 135
           ||||||||||||||||||||
Sbjct: 450 ctcgccgcggccgtgcacgc 469

>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 353     ctcgacgcgctccttgtcgcagcg 376
               ||||||||||||||||||| ||||
Sbjct: 1837977 ctcgacgcgctccttgtcgaagcg 1837954

>gb|BC053136.1| Danio rerio zgc:77398, mRNA (cDNA clone IMAGE:6789857), partial cds
          Length = 1361

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 343  cgcgcagctcctcgacgcgc 362
            ||||||||||||||||||||
Sbjct: 1002 cgcgcagctcctcgacgcgc 983

>ref|XM_838476.1| Leishmania major strain Friedlin hypothetical protein (LMJ_1394)
           partial mRNA
          Length = 1476

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 353 ctcgacgcgctccttgtcgcagcg 376
           ||||||||||||||||||| ||||
Sbjct: 783 ctcgacgcgctccttgtcgaagcg 760

>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 369     tcgcagcgcgccgtttctgccttg 392
               ||||||||||||| ||||||||||
Sbjct: 1169272 tcgcagcgcgccgattctgccttg 1169249

>emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete genome; segment 11/29
          Length = 313800

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 352    cctcgacgcgctccttgtcg 371
              ||||||||||||||||||||
Sbjct: 237562 cctcgacgcgctccttgtcg 237581

>emb|AL662984.3|OSJN00183 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0081C01,
             complete sequence
          Length = 140454

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   ctcgccgcggccgtgcacgc 135
             ||||||||||||||||||||
Sbjct: 15310 ctcgccgcggccgtgcacgc 15329

>gb|BC065604.1| Danio rerio zgc:77398, mRNA (cDNA clone MGC:77398 IMAGE:6969640),
            complete cds
          Length = 1402

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 343  cgcgcagctcctcgacgcgc 362
            ||||||||||||||||||||
Sbjct: 1025 cgcgcagctcctcgacgcgc 1006

>gb|AF440695.1| Virus PhiCh1, complete genome
          Length = 58498

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 347   cagctcctcgacgcgctcct 366
             ||||||||||||||||||||
Sbjct: 30756 cagctcctcgacgcgctcct 30737

>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 100     ggacatccaggctcagctcgccgc 123
               |||||||||||| |||||||||||
Sbjct: 2833843 ggacatccaggcgcagctcgccgc 2833820

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 116      ctcgccgcggccgtgcacgc 135
                ||||||||||||||||||||
Sbjct: 26478423 ctcgccgcggccgtgcacgc 26478442

>gb|AF139987.1|AF139987 Mus musculus LIM-kinase1 (Limk1) gene, complete cds; Wbscr1 (Wbscr1)
             gene, alternative splice products, complete cds; Wbscr5
             (Wbscr5) gene, alternative splice products, complete cds;
             and replication factor C, 40kDa subunit (Rfc2) gene,
             complete cds
          Length = 114898

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 3     caaatctcctctcgcttccccacc 26
             ||||||||||||| ||||||||||
Sbjct: 80000 caaatctcctctcccttccccacc 80023

>gb|AF289664.1|AF289664 Mus musculus CYLN2, RFC2, WBSCR15, and EIF4H genes, complete cds
          Length = 161852

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 3      caaatctcctctcgcttccccacc 26
              ||||||||||||| ||||||||||
Sbjct: 130994 caaatctcctctcccttccccacc 130971

>ref|NM_205664.1| Danio rerio zgc:77398 (zgc:77398), mRNA
          Length = 1402

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 343  cgcgcagctcctcgacgcgc 362
            ||||||||||||||||||||
Sbjct: 1025 cgcgcagctcctcgacgcgc 1006

>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome
          Length = 1849742

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 108    aggctcagctcgccgcggcc 127
              ||||||||||||||||||||
Sbjct: 697061 aggctcagctcgccgcggcc 697042

>dbj|AK121532.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033030P20, full
           insert sequence
          Length = 1683

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 116 ctcgccgcggccgtgcacgc 135
           ||||||||||||||||||||
Sbjct: 566 ctcgccgcggccgtgcacgc 585

>emb|X65098.1|HSVPHHPL H.salinarium virus phi H immunity conferring plasmid pPHIHL DNA
          Length = 12041

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 347 cagctcctcgacgcgctcct 366
           ||||||||||||||||||||
Sbjct: 707 cagctcctcgacgcgctcct 688

>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 205     gccgcaggcgtgggcgctgt 224
               ||||||||||||||||||||
Sbjct: 1957952 gccgcaggcgtgggcgctgt 1957933

>emb|AL662976.3|OSJN00177 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0074L08,
              complete sequence
          Length = 171551

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 116    ctcgccgcggccgtgcacgc 135
              ||||||||||||||||||||
Sbjct: 119063 ctcgccgcggccgtgcacgc 119082

>gb|AC166938.5| Mus musculus BAC clone RP23-85H24 from chromosome 5, complete sequence
          Length = 231866

 Score = 40.1 bits (20), Expect = 5.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 3     caaatctcctctcgcttccccacc 26
             ||||||||||||| ||||||||||
Sbjct: 97468 caaatctcctctcccttccccacc 97491


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,113,911
Number of Sequences: 3902068
Number of extensions: 2113911
Number of successful extensions: 46397
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45749
Number of HSP's gapped (non-prelim): 648
length of query: 394
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 372
effective length of database: 17,147,199,772
effective search space: 6378758315184
effective search space used: 6378758315184
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)