>TTL12_HUMAN (Q14166) Tubulin--tyrosine ligase-like protein 12|
          Length = 644

 Score = 68.2 bits (165), Expect = 9e-12
 Identities = 42/131 (32%), Positives = 61/131 (46%), Gaps = 23/131 (17%)
 Frame = +3

Query: 93  DDRIRSFEDFARVHQFLLIAAGVPSSLHRRLYRKLADEVFDGGESFSVEPCEEGRQRR-- 266
           ++  ++  +FA +H   L A+GVP     RL  KL  EVFD GE F +   EE  +    
Sbjct: 22  EEGAQALAEFAALHGPALRASGVPERYWGRLLHKLEHEVFDAGEVFGIMQVEEVEEEEDE 81

Query: 267 ---------------------LVLASGAPLGSEADVFLVDHAWSFRLSDALKQLREVPGL 383
                                +   SG        +FL+DHAW+ R+  A +QL++VPGL
Sbjct: 82  AAREVRKQQPNPGNELCYKVIVTRESGLQAAHPNSIFLIDHAWTCRVEHARQQLQQVPGL 141

Query: 384 AERMAALMCVD 416
             RMA LM ++
Sbjct: 142 LHRMANLMGIE 152

>YLN9_CAEEL (Q09512) Hypothetical protein D2013.9 in chromosome II|
          Length = 662

 Score = 63.5 bits (153), Expect = 2e-10
 Identities = 41/114 (35%), Positives = 58/114 (50%), Gaps = 4/114 (3%)
 Frame = +3

Query: 111 FEDFARVHQFLLIAAGVPSSLHRRLYRKLADEVFDGGESFSVEPCE--EGRQRRLVLASG 284
           F  F   H   L A+ VP  L   LY+KL+D+ FD G+ F +  CE  E  ++ L + + 
Sbjct: 10  FSTFLDQHSGQLNASDVPPELWHSLYKKLSDQTFDAGDHFQII-CEMNEDDEKTLFVRAL 68

Query: 285 APL--GSEADVFLVDHAWSFRLSDALKQLREVPGLAERMAALMCVDLDRRIEVE 440
             L    E ++FL+DH  SF    A K +    GL ER+A L  +D D   EV+
Sbjct: 69  EDLHNNDEDNIFLIDHFMSFSSESARKCVESTEGLVERLAGLFGIDTDSTEEVD 122

>SPH1_XENLA (Q09003) Sphere organelles protein SPH-1 (Sphere protein 1)|
          Length = 536

 Score = 35.8 bits (81), Expect = 0.049
 Identities = 22/83 (26%), Positives = 32/83 (38%)
 Frame = -3

Query: 340 RKDHAWSTRKTSASLPRGAPEASTRRRCLPSSQGSTEKLSPPSNTSSASLRYSRRCSDDG 161
           RK H     K  +  P   P     R+C P +     KLS    TSS+    +  CSD  
Sbjct: 170 RKTHKGKRTKKKSEAPIENPPDKHSRKCPPQASNKALKLSWKRQTSSSDSSDTSSCSDQP 229

Query: 160 TPAAISRNWCTLAKSSKLRMRSS 92
           TP    +   +  + ++   R S
Sbjct: 230 TPTTQQKPQSSAKRQNQAATRES 252

>PST1_SCHPO (Q09750) Paired amphipathic helix protein pst1 (SIN3 homolog 1)|
          Length = 1522

 Score = 33.9 bits (76), Expect = 0.18
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = -2

Query: 326 VVDEEDVRLAPKRRPGGEHEAALPP---FLAGLDGEALPAVEHLVGELAVQPPMQRRRHA 156
           VV +E     PKR P     +ALPP   F      +A PA E   GE    P +Q R H+
Sbjct: 429 VVPQESATATPKRSPSATPTSALPPIGKFAPPTTAKAQPAPEKRRGE----PAVQTRNHS 484

Query: 155 GRNQ 144
            R +
Sbjct: 485 KRTR 488

>ZN265_HUMAN (O95218) Zinc finger protein 265 (Zinc finger, splicing)|
          Length = 337

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 25/68 (36%), Positives = 34/68 (50%)
 Frame = -3

Query: 421 SRSTHIRAAILSANPGTSRSCLSASERRKDHAWSTRKTSASLPRGAPEASTRRRCLPSSQ 242
           SRS+H R++  S++P +SRS  S S  R   +  +R  S+S  R     S  R    SS 
Sbjct: 206 SRSSHSRSSSRSSSPSSSRS-RSRSRSRSSSSSQSRSRSSSRERSRSRGSKSR----SSS 260

Query: 241 GSTEKLSP 218
            ST  L P
Sbjct: 261 RSTGALLP 268

>HCN2_RAT (Q9JKA9) Potassium/sodium hyperpolarization-activated cyclic|
           nucleotide-gated channel 2
          Length = 863

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 21/53 (39%), Positives = 26/53 (49%)
 Frame = -3

Query: 301 SLPRGAPEASTRRRCLPSSQGSTEKLSPPSNTSSASLRYSRRCSDDGTPAAIS 143
           SLP GAP  S      P+S  ST +L P   T +A+    RR  D  +P A S
Sbjct: 798 SLPHGAPAPSPAASARPAS-SSTPRLGPAPTTRTAAPSPDRR--DSASPGAAS 847

>YB95_SCHPO (O42970) Hypothetical serine-rich protein C1E8.05 precursor|
          Length = 317

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 20/82 (24%), Positives = 41/82 (50%)
 Frame = -3

Query: 388 SANPGTSRSCLSASERRKDHAWSTRKTSASLPRGAPEASTRRRCLPSSQGSTEKLSPPSN 209
           S++  +S S  S+S  +   +  +  +S+S  + +  +S+  +   SS  S++  + PS+
Sbjct: 155 SSSSSSSSSSPSSSSSKSSSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPSS 214

Query: 208 TSSASLRYSRRCSDDGTPAAIS 143
           + S+S   S       TPA+ S
Sbjct: 215 SKSSSKFSSSSFITSTTPASSS 236

>CRLS1_MOUSE (Q80ZM8) Cardiolipin synthetase (EC 2.7.8.-) (Cardiolipin synthase)|
           (CLS)
          Length = 303

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 20/44 (45%), Positives = 25/44 (56%)
 Frame = +1

Query: 148 LRPACRRRCIGGCTASSPTRCSTAGRASPSSPARKGGSAASCSP 279
           LRPA     + G  A   T CS AG+A+P  PA  GG AA+ +P
Sbjct: 51  LRPAAFALRLPG--AGPRTHCSGAGKAAP-EPAAGGGGAAAQAP 91

>OTX2_MOUSE (P80206) Homeobox protein OTX2|
          Length = 289

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 21/66 (31%), Positives = 34/66 (51%)
 Frame = -3

Query: 292 RGAPEASTRRRCLPSSQGSTEKLSPPSNTSSASLRYSRRCSDDGTPAAISRNWCTLAKSS 113
           R A + S+  R + S  G++ + +PPS+TS  ++  S       +PA+IS     L+ SS
Sbjct: 109 RPAKKKSSPAREVSSESGTSGQFTPPSSTSVPTIASSSAPVSIWSPASISPLSDPLSTSS 168

Query: 112 KLRMRS 95
               RS
Sbjct: 169 SCMQRS 174

>ZN265_MOUSE (Q9R020) Zinc finger protein 265 (Zinc finger, splicing) (Fragment)|
          Length = 326

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 26/79 (32%), Positives = 35/79 (44%)
 Frame = -3

Query: 421 SRSTHIRAAILSANPGTSRSCLSASERRKDHAWSTRKTSASLPRGAPEASTRRRCLPSSQ 242
           SRS+H R++  S++P +SRS  S S  R   +  +R  S S        S  R    SS 
Sbjct: 206 SRSSHSRSSSRSSSPSSSRS-RSRSRSRSSSSSQSRSHSGSREHSRSRGSKSR----SSS 260

Query: 241 GSTEKLSPPSNTSSASLRY 185
            ST  L P        LR+
Sbjct: 261 RSTGALLPQEKDLIRVLRH 279

>TTBK2_MOUSE (Q3UVR3) Tau-tubulin kinase 2|
          Length = 1243

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 26/92 (28%), Positives = 33/92 (35%), Gaps = 19/92 (20%)
 Frame = -3

Query: 400  AAILSANPGTSRSCLSASERRKDHAWSTRKTSASLPRGAPEASTRRRCLPSSQGST---- 233
            A IL      SRS          H   T   S  +PR +P AS R   LP +  S+    
Sbjct: 1111 AQILQNGSQKSRSTTQCKSPGSPHNPKTPPKSPVVPRRSPSASPRSSSLPRTSSSSPSRA 1170

Query: 232  ---------------EKLSPPSNTSSASLRYS 182
                              SPPS++ S+S R S
Sbjct: 1171 GRPHHDQRSSSPHLGRSKSPPSHSGSSSSRRS 1202

>VIT2_CHICK (P02845) Vitellogenin-2 precursor (Vitellogenin II) (Major|
            vitellogenin) [Contains: Lipovitellin-1 (Lipovitellin I)
            (LVI); Phosvitin (PV); Lipovitellin-2 (Lipovitellin II)
            (LVII); YGP40]
          Length = 1850

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 10/110 (9%)
 Frame = -3

Query: 388  SANPGTSRSCLSAS---------ERRKDHAWSTR-KTSASLPRGAPEASTRRRCLPSSQG 239
            +++  TS S  SAS         E   D     R K ++S  R +  +++ +R    S  
Sbjct: 1129 ASSTATSSSSSSASSPNRKKPMDEEENDQVKQARNKDASSSSRSSKSSNSSKRSSSKSSN 1188

Query: 238  STEKLSPPSNTSSASLRYSRRCSDDGTPAAISRNWCTLAKSSKLRMRSSR 89
            S+++ S  S++SS+S R S   S        S N  + + SSK    SSR
Sbjct: 1189 SSKRSSSSSSSSSSSSRSSSSSSSS------SSNSKSSSSSSKSSSSSSR 1232

>DPOLL_MACFA (Q4R380) DNA polymerase lambda (EC 2.7.7.7) (EC 4.2.99.-) (Pol|
           Lambda)
          Length = 575

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = -3

Query: 322 STRKTSASLPRGAPEASTRRRCLPSSQGSTEKLSPPSNTSSASLRYSRRCSDD 164
           S  +  ASLP G  EA  +   LP     T  +SPP  T  A    ++  SDD
Sbjct: 145 SKAEQDASLPPGTHEALLQT-ALPPPPSPTRPVSPPQKTKEAPNTQAQPISDD 196

>OSBL7_HUMAN (Q9BZF2) Oxysterol-binding protein-related protein 7 (OSBP-related|
           protein 7) (ORP-7)
          Length = 842

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 20/64 (31%), Positives = 25/64 (39%)
 Frame = -3

Query: 430 ILLSRSTHIRAAILSANPGTSRSCLSASERRKDHAWSTRKTSASLPRGAPEASTRRRCLP 251
           +LLS S+            TS    S SE   D   + R        G P    RRRCLP
Sbjct: 409 VLLSASSSENEGSEEEESCTSEITTSLSEEMLDLRGAERCQKGGCVPGRPMGPPRRRCLP 468

Query: 250 SSQG 239
           ++ G
Sbjct: 469 AASG 472

>THRB_RAT (P18292) Prothrombin precursor (EC 3.4.21.5) (Coagulation factor|
           II) [Contains: Activation peptide fragment 1; Activation
           peptide fragment 2; Thrombin light chain; Thrombin heavy
           chain]
          Length = 617

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 322 STRKTSASLPRGAPEASTRRRCLPSSQGSTEKLSPP 215
           + R+   S+P    E  T  +  P S+GS E LSPP
Sbjct: 176 TVRREECSIPVCGQEGRTTVKMTPRSRGSKENLSPP 211

>ZN265_RAT (O35986) Zinc finger protein 265 (Zinc finger, splicing)|
          Length = 332

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 24/68 (35%), Positives = 32/68 (47%)
 Frame = -3

Query: 421 SRSTHIRAAILSANPGTSRSCLSASERRKDHAWSTRKTSASLPRGAPEASTRRRCLPSSQ 242
           SRS+H R++  S++P +SRS  S S  R   +  +R  S S        S  R    SS 
Sbjct: 206 SRSSHSRSSSRSSSPSSSRS-RSRSRSRSSSSSQSRSHSGSREHSRSRGSKSR----SSS 260

Query: 241 GSTEKLSP 218
            ST  L P
Sbjct: 261 RSTGALLP 268

>SLAP_BACCI (P35824) S-layer-related protein precursor|
          Length = 1616

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = +1

Query: 151  RPACRRRCIGGCTASSPTRCSTAGRASPSSPARKGGSAASCSP 279
            RP  RRR +    A  PTR S    ASP+         +SC P
Sbjct: 1419 RPGARRRPLSATEAGGPTRWSPPRSASPTLHPTGRARMSSCWP 1461

>MINT_HUMAN (Q96T58) Msx2-interacting protein (SPEN homolog)|
           (SMART/HDAC1-associated repressor protein)
          Length = 3664

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 27/88 (30%), Positives = 42/88 (47%)
 Frame = -3

Query: 370 SRSCLSASERRKDHAWSTRKTSASLPRGAPEASTRRRCLPSSQGSTEKLSPPSNTSSASL 191
           SRS    S + ++ +     + AS P  +P  S  R    S   S++ +S  S+TSS S 
Sbjct: 240 SRSRSPHSSQSRNQSPQRLASQASRPTRSPSGSGSR----SRSSSSDSISSSSSTSSDSS 295

Query: 190 RYSRRCSDDGTPAAISRNWCTLAKSSKL 107
             S   SDD +PA   ++    A +S+L
Sbjct: 296 DSSSSSSDD-SPARSVQSAAVPAPTSQL 322

>AMER1_MOUSE (Q9JHT5) AMME syndrome candidate gene 1 protein homolog|
          Length = 344

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 13/35 (37%), Positives = 14/35 (40%)
 Frame = +1

Query: 178 GGCTASSPTRCSTAGRASPSSPARKGGSAASCSPP 282
           GGC  S P  C   G       +  GG   S SPP
Sbjct: 69  GGCPLSPPQGCGGGGGGGGGGGSGSGGGGISLSPP 103

>YMD5_CAEEL (P34459) Hypothetical protein F54H12.5|
          Length = 880

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = -3

Query: 385 ANPGTSRSCLSASERRKDHAWSTRKTSASLPRGAPEASTRRRCLPSSQGSTEKLSPPSNT 206
           A+P T  + +S+S+   + +  T  T +S     PE ST      SS  S   L+  S T
Sbjct: 359 ASPTTPETTISSSDSTNESSSITSSTDSSTNSMLPETSTIDPGSQSSSYSGNSLTASSTT 418

Query: 205 SSASL 191
           S  S+
Sbjct: 419 SDPSI 423

>YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein PB15E9.01c|
           precursor
          Length = 943

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 29/97 (29%), Positives = 47/97 (48%)
 Frame = -3

Query: 439 STSILLSRSTHIRAAILSANPGTSRSCLSASERRKDHAWSTRKTSASLPRGAPEASTRRR 260
           S+S L S ST+   +  SA+P  + S L++S        S+  TS+SL   +  +S+   
Sbjct: 87  SSSSLASSSTN---STTSASP--TSSSLTSSSATSSSLASSSTTSSSLASSSITSSS--- 138

Query: 259 CLPSSQGSTEKLSPPSNTSSASLRYSRRCSDDGTPAA 149
            L SS  ++  L+  S TSS+    S   +   TP +
Sbjct: 139 -LASSSITSSSLASSSTTSSSLASSSTNSTTSATPTS 174

>OTX2_HUMAN (P32243) Homeobox protein OTX2|
          Length = 289

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 20/66 (30%), Positives = 34/66 (51%)
 Frame = -3

Query: 292 RGAPEASTRRRCLPSSQGSTEKLSPPSNTSSASLRYSRRCSDDGTPAAISRNWCTLAKSS 113
           R A + ++  R + S  G++ + +PPS+TS  ++  S       +PA+IS     L+ SS
Sbjct: 109 RPAKKKTSPAREVSSESGTSGQFTPPSSTSVPTIASSSAPVSIWSPASISPLSDPLSTSS 168

Query: 112 KLRMRS 95
               RS
Sbjct: 169 SCMQRS 174

>GAT1_YEAST (P43574) Transcriptional regulatory protein GAT1|
          Length = 510

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 27/95 (28%), Positives = 38/95 (40%)
 Frame = -3

Query: 439 STSILLSRSTHIRAAILSANPGTSRSCLSASERRKDHAWSTRKTSASLPRGAPEASTRRR 260
           +T+   S ST+  + +L  NP  S S +    RR     S RK   +L +          
Sbjct: 241 NTNTNTSASTNTNSPLLRRNP--SPSIVKPGSRRNS---SVRKKKPALKK---------- 285

Query: 259 CLPSSQGSTEKLSPPSNTSSASLRYSRRCSDDGTP 155
            + SS       +PPSNTSS        C+   TP
Sbjct: 286 -IKSSTSVQSSATPPSNTSSNPDIKCSNCTTSTTP 319

>TBX15_MOUSE (O70306) T-box transcription factor TBX15 (T-box protein 15)|
           (MmTBx8)
          Length = 602

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +1

Query: 178 GGCTASSPTRCSTAGRASPSSPARKGGSAASCSPP 282
           GG T +SPT  ST    +PS  A     + SCSPP
Sbjct: 342 GGSTGTSPTTSSTG---TPSPSASSHLLSPSCSPP 373

>TBX15_HUMAN (Q96SF7) T-box transcription factor TBX15 (T-box protein 15)|
          Length = 602

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +1

Query: 178 GGCTASSPTRCSTAGRASPSSPARKGGSAASCSPP 282
           GG T +SPT  ST    +PS  A     + SCSPP
Sbjct: 342 GGSTGTSPTTSSTG---TPSPSASSHLLSPSCSPP 373

>MECT1_HUMAN (Q6UUV9) Mucoepidermoid carcinoma translocated protein 1|
           (Transducer of regulated cAMP response element-binding
           protein 1) (Transducer of CREB protein 1)
          Length = 634

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
 Frame = -3

Query: 421 SRSTHIRAAILSANPGTSRSCLSASERRKDHAWSTRKTSASLPRGAPEASTRRRCLPSS- 245
           S+  H +  +L   PG   +   A +     AW T+KT  S P+            PS+ 
Sbjct: 172 SQDVHQKRVLLLTVPGMEETTSEADKNLSKQAWDTKKT-GSRPKSCEVPGI--NIFPSAD 228

Query: 244 QGSTEKLSPPSNTSSASL 191
           Q +T  L P ++ +  SL
Sbjct: 229 QENTTALIPATHNTGGSL 246

>GBF1_CRIGR (Q9R1D7) Golgi-specific brefeldin A-resistance guanine nucleotide|
            exchange factor 1 (BFA-resistant GEF 1)
          Length = 1856

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 16/35 (45%), Positives = 20/35 (57%)
 Frame = -3

Query: 319  TRKTSASLPRGAPEASTRRRCLPSSQGSTEKLSPP 215
            TR TS+S P G+P AS+  R  PS +G      PP
Sbjct: 1771 TRATSSSSP-GSPVASSPSRLSPSPEGPPPLAQPP 1804


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,662,886
Number of Sequences: 219361
Number of extensions: 879111
Number of successful extensions: 4584
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 4293
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4572
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)