ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl12d02 |
|---|---|
| Clone Library Name | barley_pub |
>NCBP1_HUMAN (Q09161) Nuclear cap-binding protein subunit 1 (80 kDa nuclear| cap-binding protein) (NCBP 80 kDa subunit) (CBP80) Length = 790 Score = 50.1 bits (118), Expect = 2e-06 Identities = 31/119 (26%), Positives = 57/119 (47%) Frame = +2 Query: 62 TLLLRIGDRCPEYGGTADHKEHIEICYNVLSREYEHSKDDIFEFLLQCAEQLPHKIPFFG 241 +L+ ++G++ + ++E VL + + K I L A LP K+ + Sbjct: 33 SLICKVGEK-----SACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYT 87 Query: 242 VLIGLINLENEDFAKGIVDATQANLQDALHTENRDRIRILLRFLCGLMCSKVISPNSII 418 L+GL+N N +F V+A L+++L N + L+RFL L+ VI+ S++ Sbjct: 88 TLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAAPSMV 146
>ZN484_HUMAN (Q5JVG2) Zinc finger protein 484| Length = 852 Score = 32.7 bits (73), Expect = 0.37 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%) Frame = -2 Query: 269 FLNLSNLSKLQRKESCEVIVRHTEGETQKYHLWSVHIHEKAHC--NRFRCVPCGRLFPR 99 F+ S+L + QR S E ++E E +++IH+K H F C CG+ F R Sbjct: 337 FIQKSDLFRCQRIHSGEKPYEYSECEKNLPQNSNLNIHKKIHTGGKHFECTECGKAFTR 395
>ITT1_YEAST (Q04638) Translation termination inhibitor protein ITT1| Length = 464 Score = 30.4 bits (67), Expect = 1.8 Identities = 16/48 (33%), Positives = 21/48 (43%) Frame = -2 Query: 248 SKLQRKESCEVIVRHTEGETQKYHLWSVHIHEKAHCNRFRCVPCGRLF 105 S LQR C+V+V +EG CN+ +C CG LF Sbjct: 397 SNLQRCPKCKVVVERSEG-----------------CNKMKCEVCGTLF 427
>BINCA_HUMAN (Q96LW7) Bcl10-interacting CARD protein (BinCARD)| Length = 228 Score = 30.4 bits (67), Expect = 1.8 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -3 Query: 115 VGCSPVLGAPVADAKQQRPPASAHG 41 V CSP L +P+A A QRPP+ G Sbjct: 135 VCCSPGLASPLASAPPQRPPSGPEG 159
>SHCBA_XENLA (Q6GPE9) SHC SH2 domain-binding protein 1 homolog A| Length = 699 Score = 29.6 bits (65), Expect = 3.1 Identities = 11/38 (28%), Positives = 21/38 (55%) Frame = +2 Query: 98 YGGTADHKEHIEICYNVLSREYEHSKDDIFEFLLQCAE 211 Y TA EH+ Y + R ++ ++D F++ ++C E Sbjct: 189 YNQTALAIEHLRFFYQQIWRPWDEEEEDYFDYFVRCVE 226
>HUTH2_FUSNN (Q8RDU4) Histidine ammonia-lyase 2 (EC 4.3.1.3) (Histidase 2)| Length = 511 Score = 29.6 bits (65), Expect = 3.1 Identities = 16/51 (31%), Positives = 24/51 (47%) Frame = +2 Query: 164 EHSKDDIFEFLLQCAEQLPHKIPFFGVLIGLINLENEDFAKGIVDATQANL 316 E KD I E E L +K+P +G+ G EN ++ ++ Q NL Sbjct: 31 EKQKDKILESRKYVEEALSNKMPIYGINTGFGKFENVPISEEELELLQKNL 81
>VGLH_BHV1C (P27599) Glycoprotein H precursor| Length = 842 Score = 29.6 bits (65), Expect = 3.1 Identities = 16/35 (45%), Positives = 20/35 (57%) Frame = -3 Query: 109 CSPVLGAPVADAKQQRPPASAHGGGGGQQRAERDA 5 C+ +L A V A PA+A GG GG+ R RDA Sbjct: 6 CAALLAAAVL-ALAAGAPAAARGGAGGRSREHRDA 39
>ROBO2_MOUSE (Q7TPD3) Roundabout homolog 2 precursor| Length = 1470 Score = 29.6 bits (65), Expect = 3.1 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 5/56 (8%) Frame = -2 Query: 206 HTEGETQKYHLWSVHIHEKAHCNR-----FRCVPCGRLFPRTRGTCRRCEAAASSS 54 H G Q+Y +W + + H N+ R V G LFP G R E AAS+S Sbjct: 771 HQNGIIQEYKIWCLGNETRFHINKTVDAAIRSVVIGGLFP---GIQYRVEVAASTS 823
>SHCBB_XENLA (Q640F2) SHC SH2 domain-binding protein 1 homolog B| Length = 698 Score = 29.6 bits (65), Expect = 3.1 Identities = 11/38 (28%), Positives = 21/38 (55%) Frame = +2 Query: 98 YGGTADHKEHIEICYNVLSREYEHSKDDIFEFLLQCAE 211 Y TA EH+ Y + R ++ ++D F++ ++C E Sbjct: 189 YDQTALTIEHVRFFYQQIWRPWDEEEEDYFDYFVRCVE 226
>CP4B1_RAT (P15129) Cytochrome P450 4B1 (EC 1.14.14.1) (CYPIVB1) (P450-isozyme| 5) (P450 L-2) Length = 510 Score = 29.6 bits (65), Expect = 3.1 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%) Frame = +2 Query: 206 AEQLPHKIP-FFGVLIGLINLENEDFAKGI 292 A+Q PH P +FG +G +N+ D+AK + Sbjct: 73 AQQFPHAHPLWFGQFVGFLNIYEPDYAKAV 102
>ODD1_CAEEL (P41995) Zinc finger protein odd-1| Length = 242 Score = 29.3 bits (64), Expect = 4.0 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%) Frame = -2 Query: 251 LSKLQRKES-CEVIVRHTEGETQKYHLWSVHIHEKAHCNR--FRCVPCGRLFPR 99 + K +KE C+ RH T+ Y+L IHE+ H N F C CG+ F R Sbjct: 120 IRKRPKKEFICKYCARHF---TKSYNLM---IHERTHTNERPFHCETCGKSFRR 167
>ROBO2_HUMAN (Q9HCK4) Roundabout homolog 2 precursor| Length = 1378 Score = 29.3 bits (64), Expect = 4.0 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 5/56 (8%) Frame = -2 Query: 206 HTEGETQKYHLWSVHIHEKAHCNR-----FRCVPCGRLFPRTRGTCRRCEAAASSS 54 H G Q+Y +W + + H N+ R V G LFP G R E AAS+S Sbjct: 767 HQNGIIQEYKIWCLGNETRFHINKTVDAAIRSVIIGGLFP---GIQYRVEVAASTS 819
>PROD_CAEEL (O45228) Probable proline oxidase, mitochondrial precursor (EC| 1.5.3.-) (Proline dehydrogenase) Length = 616 Score = 29.3 bits (64), Expect = 4.0 Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%) Frame = +2 Query: 80 GDRCPEYGGT-ADHKEHIEICYNVLSREYEHSKD 178 GD Y T A+HK+ +E CYN L +E++K+ Sbjct: 33 GDTGKPYDCTSAEHKKELEECYNRLDLSFENTKE 66
>E2F5_HUMAN (Q15329) Transcription factor E2F5 (E2F-5)| Length = 346 Score = 29.3 bits (64), Expect = 4.0 Identities = 15/37 (40%), Positives = 16/37 (43%) Frame = -3 Query: 112 GCSPVLGAPVADAKQQRPPASAHGGGGGQQRAERDAG 2 G P P A A Q PP G GGG R E+ G Sbjct: 20 GQRPPPQPPQAQAPQPPPPPQLGGAGGGSSRHEKSLG 56
>SMC2_SCHPO (P41003) Structural maintenance of chromosome 2 (Chromosome| segregation protein cut14) (Cell untimely torn protein 14) Length = 1172 Score = 28.9 bits (63), Expect = 5.3 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 4/63 (6%) Frame = +2 Query: 182 IFEF----LLQCAEQLPHKIPFFGVLIGLINLENEDFAKGIVDATQANLQDALHTENRDR 349 IF+F + QC EQL + P F + IN + D G V+ +A L+ + T +RD+ Sbjct: 955 IFDFHSQNMRQCREQLHNLKPRFASMRKAINPKVMDMIDG-VEKKEAKLRSMIKTIHRDK 1013 Query: 350 IRI 358 +I Sbjct: 1014 KKI 1016
>RAF_MSV36 (P00532) Serine/threonine-protein kinase transforming protein raf| (EC 2.7.11.1) Length = 323 Score = 28.9 bits (63), Expect = 5.3 Identities = 17/64 (26%), Positives = 29/64 (45%) Frame = +2 Query: 149 LSREYEHSKDDIFEFLLQCAEQLPHKIPFFGVLIGLINLENEDFAKGIVDATQANLQDAL 328 LSR Y++ I + C +++ + P F ++ I L K A + +L A Sbjct: 245 LSRLYKNCPKAIKRLVADCVKKVKEERPLFPQILSSIELLQHSLPKINRSAPEPSLHRAA 304 Query: 329 HTEN 340 HTE+ Sbjct: 305 HTED 308
>HME1_HUMAN (Q05925) Homeobox protein engrailed-1 (Hu-En-1)| Length = 392 Score = 28.9 bits (63), Expect = 5.3 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 5/29 (17%) Frame = -3 Query: 73 KQQRPP-----ASAHGGGGGQQRAERDAG 2 K+Q PP A+A GG GG R ERD G Sbjct: 119 KEQPPPQLLVAAAARGGAGGGGRVERDRG 147
>RL40_AERPE (Q9YFY7) 50S ribosomal protein L40e| Length = 50 Score = 28.9 bits (63), Expect = 5.3 Identities = 14/33 (42%), Positives = 17/33 (51%) Frame = -2 Query: 167 VHIHEKAHCNRFRCVPCGRLFPRTRGTCRRCEA 69 V I EK N+ C CG L P + CRRC + Sbjct: 9 VAIFEKRVLNKKVCRRCGALNPMSATKCRRCRS 41
>ZBT17_HUMAN (Q13105) Zinc finger and BTB domain-containing protein 17 (Zinc| finger protein 151) (Myc-interacting zinc finger protein) (Miz-1 protein) Length = 803 Score = 28.5 bits (62), Expect = 6.9 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%) Frame = -2 Query: 188 QKYHLWSV-HIHEKAHCN--RFRCVPCGRLFPRTRGTCRRCEAAASSSQ 51 + Y L S+ ++H+K H R+RC CG+LF T G +R + S + Sbjct: 369 KSYRLISLLNLHKKRHSGEARYRCEDCGKLF-TTSGNLKRHQLVHSGEK 416
>Y563_LISMF (Q723B6) UPF0210 protein LMOf2365_0563| Length = 451 Score = 28.5 bits (62), Expect = 6.9 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = +2 Query: 146 VLSREYEHSKDDIFEFLLQCAEQLPHKIPFFGVLIGLINLENEDFAKGIVDATQA 310 V+ R E K + F+ + + +Q KI G L+G + E GIVD + A Sbjct: 222 VVKRAIEKVKGEPFDIVAETVKQTAFKITRMGQLVGQVASEKLGVPFGIVDLSLA 276
>Y538_LISIN (Q92EC2) UPF0210 protein lin0538| Length = 451 Score = 28.5 bits (62), Expect = 6.9 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = +2 Query: 146 VLSREYEHSKDDIFEFLLQCAEQLPHKIPFFGVLIGLINLENEDFAKGIVDATQA 310 V+ R E K + F+ + + +Q KI G L+G + E GIVD + A Sbjct: 222 VVKRAIEKVKGEPFDIVAETVKQTAFKITRMGQLVGQVASEKLGVPFGIVDLSLA 276
>Y534_LISMO (Q8Y9J3) UPF0210 protein lmo0534| Length = 451 Score = 28.5 bits (62), Expect = 6.9 Identities = 17/55 (30%), Positives = 26/55 (47%) Frame = +2 Query: 146 VLSREYEHSKDDIFEFLLQCAEQLPHKIPFFGVLIGLINLENEDFAKGIVDATQA 310 V+ R E K + F+ + + +Q KI G L+G + E GIVD + A Sbjct: 222 VVKRAIEKVKGEPFDIVAETVKQTAFKITRMGQLVGQVASEKLGVPFGIVDLSLA 276
>RAF1_RAT (P11345) RAF proto-oncogene serine/threonine-protein kinase (EC| 2.7.11.1) (Raf-1) (C-RAF) (cRaf) Length = 648 Score = 28.5 bits (62), Expect = 6.9 Identities = 16/64 (25%), Positives = 30/64 (46%) Frame = +2 Query: 149 LSREYEHSKDDIFEFLLQCAEQLPHKIPFFGVLIGLINLENEDFAKGIVDATQANLQDAL 328 LSR Y++ + + C +++ + P F ++ I L K A++ +L A Sbjct: 570 LSRLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLPKINRSASEPSLHRAA 629 Query: 329 HTEN 340 HTE+ Sbjct: 630 HTED 633
>RAF1_MOUSE (Q99N57) RAF proto-oncogene serine/threonine-protein kinase (EC| 2.7.11.1) (Raf-1) (C-RAF) (cRaf) Length = 648 Score = 28.5 bits (62), Expect = 6.9 Identities = 16/64 (25%), Positives = 30/64 (46%) Frame = +2 Query: 149 LSREYEHSKDDIFEFLLQCAEQLPHKIPFFGVLIGLINLENEDFAKGIVDATQANLQDAL 328 LSR Y++ + + C +++ + P F ++ I L K A++ +L A Sbjct: 570 LSRLYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLPKINRSASEPSLHRAA 629 Query: 329 HTEN 340 HTE+ Sbjct: 630 HTED 633
>SRC64_DROME (P00528) Tyrosine-protein kinase Src64B (EC 2.7.10.2) (Dsrc64)| Length = 552 Score = 28.5 bits (62), Expect = 6.9 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = +2 Query: 122 EHIEICYNVLSREYEHSKDDIFEFLLQCAEQLPHKIPFFGVL 247 E+IE + + + D+I++ LLQC + +P K P F L Sbjct: 491 ENIERGFRMPKPTNHYFPDNIYQLLLQCWDAVPEKRPTFEFL 532
>PYRG_OCEIH (Q8EM53) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP| synthetase) Length = 535 Score = 28.5 bits (62), Expect = 6.9 Identities = 12/31 (38%), Positives = 22/31 (70%) Frame = +2 Query: 221 HKIPFFGVLIGLINLENEDFAKGIVDATQAN 313 + IPFFG+ +G+ L + +FA+ +V +QA+ Sbjct: 373 NNIPFFGICLGM-QLASVEFARNVVGLSQAH 402
>PURK_AQUAE (O66608) Phosphoribosylaminoimidazole carboxylase ATPase subunit| (EC 4.1.1.21) (AIR carboxylase) (AIRC) Length = 365 Score = 28.1 bits (61), Expect = 9.0 Identities = 13/39 (33%), Positives = 24/39 (61%) Frame = +2 Query: 74 RIGDRCPEYGGTADHKEHIEICYNVLSREYEHSKDDIFE 190 R+ DRC G + E ++ C ++++ E+EH KD++ E Sbjct: 40 RVADRCFRTGQIS---EFVDSC-DIITYEFEHIKDEVLE 74
>MTM1_HUMAN (Q13496) Myotubularin (EC 3.1.3.48)| Length = 603 Score = 28.1 bits (61), Expect = 9.0 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +2 Query: 167 HSKDDIFEFLLQCAEQLPHKIPFFGVL 247 HS+ D+FE L + A L H +P F L Sbjct: 128 HSRRDMFEILTRYAFPLAHSLPLFAFL 154
>PA2G6_MOUSE (P97819) 85 kDa calcium-independent phospholipase A2 (EC 3.1.1.4)| (iPLA2) (CaI-PLA2) (Group VI phospholipase A2) (GVI PLA2) Length = 752 Score = 28.1 bits (61), Expect = 9.0 Identities = 16/58 (27%), Positives = 25/58 (43%) Frame = -2 Query: 296 PRYPWQSLHFLNLSNLSKLQRKESCEVIVRHTEGETQKYHLWSVHIHEKAHCNRFRCV 123 PRY LH+ + ++++ K C+V + G T +H NRF CV Sbjct: 284 PRYGASPLHWAKNAEMARMLLKRGCDVDSTSSSGNTA--------LHVAVMRNRFDCV 333
>ZBT17_MOUSE (Q60821) Zinc finger and BTB domain-containing protein 17 (Zinc| finger protein 151) (Zinc finger protein 100) (Zfp-100) (Polyomavirus late initiator promoter-binding protein) (LP-1) (Zinc finger protein Z13) Length = 794 Score = 28.1 bits (61), Expect = 9.0 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 3/49 (6%) Frame = -2 Query: 188 QKYHLWSV-HIHEKAHCN--RFRCVPCGRLFPRTRGTCRRCEAAASSSQ 51 + Y L S+ ++H+K H R+RC CG+LF T G +R + S + Sbjct: 360 KSYRLISLLNLHKKRHSGEARYRCGDCGKLF-TTSGNLKRHQLVHSGQK 407
>OR7A_DROME (Q9W3I5) Putative odorant receptor 7a| Length = 413 Score = 28.1 bits (61), Expect = 9.0 Identities = 15/52 (28%), Positives = 26/52 (50%) Frame = +3 Query: 66 CCFASATGAPSTGEQPTTRNTSKSVTMCFLVNMNTPKMIFLSFSFSVPNNYL 221 C +A AP G +PTT +T + + CF V M +++ + F + Y+ Sbjct: 26 CFYALGMQAPD-GSRPTTSSTWQRIYACFSVVMYVWQLLLVPTFFVISYRYM 76
>Y006_RICPR (Q9ZED6) Hypothetical protein RP006| Length = 706 Score = 28.1 bits (61), Expect = 9.0 Identities = 17/58 (29%), Positives = 30/58 (51%) Frame = -3 Query: 244 NSKERNLVR*LFGTLKEKLKNIIFGVFIFTRKHIVTDFDVFLVVGCSPVLGAPVADAK 71 +SK RN+ L LKE +IF + +KH +T D+ +++ SP + + + K Sbjct: 581 DSKYRNVG--LLKILKENKNKVIFATYPDIKKHKLTSVDI-VIINTSPEIAEELQELK 635 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,554,141 Number of Sequences: 219361 Number of extensions: 1376309 Number of successful extensions: 5240 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 5028 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5236 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
