Clone Information

BLAST Search Result

Clone Name	bastl12d01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	YEU6_YEAST (P40072) Hypothetical 30.8 kDa protein in SPR6-RPL23B...	35	0.032
2	TRAF2_HUMAN (Q12933) TNF receptor-associated factor 2 (Tumor nec...	35	0.032
3	UB7I3_RAT (Q62921) Ubiquitin-conjugating enzyme 7-interacting pr...	35	0.055
4	TRAF6_MOUSE (P70196) TNF receptor-associated factor 6	35	0.055
5	UB7I3_HUMAN (Q9BYM8) Ubiquitin-conjugating enzyme 7-interacting ...	35	0.055
6	DG17_DICDI (P11467) Protein DG17	34	0.072
7	TRAF6_HUMAN (Q9Y4K3) TNF receptor-associated factor 6 (Interleuk...	34	0.072
8	UB7I3_MOUSE (Q9WUB0) Ubiquitin-conjugating enzyme 7-interacting ...	34	0.094
9	TRI50_MOUSE (Q810I2) Tripartite motif protein 50	34	0.094
10	TRAF2_MOUSE (P39429) TNF receptor-associated factor 2	33	0.12
11	TRI50_RAT (Q810I1) Tripartite motif protein 50	33	0.12
12	TRI74_HUMAN (Q86UV6) Tripartite motif protein 74 (Tripartite mot...	32	0.27
13	TRI73_HUMAN (Q86UV7) Tripartite motif protein 73 (Tripartite mot...	32	0.27
14	BRCA1_RAT (O54952) Breast cancer type 1 susceptibility protein h...	32	0.27
15	TRI50_PIG (Q865W2) Tripartite motif protein 50	32	0.27
16	BRE1_CAEBR (Q60YN5) Ubiquitin-protein ligase bre-1 (EC 6.3.2.-) ...	32	0.36
17	TRI49_HUMAN (Q9NS80) Tripartite motif protein 49 (RING finger pr...	32	0.36
18	TRI50_HUMAN (Q86XT4) Tripartite motif protein 50	32	0.36
19	BRE1_CAEEL (P34537) Ubiquitin-protein ligase bre-1 (EC 6.3.2.-) ...	32	0.36
20	TRI40_HUMAN (Q6P9F5) Tripartite motif 40 protein (RING finger pr...	32	0.47
21	TRI30_MOUSE (P15533) Tripartite motif protein 30 (Down regulator...	32	0.47
22	TRI40_PANTR (Q1XHT8) Tripartite motif 40 protein	32	0.47
23	RAG1_ONCMY (Q91187) V(D)J recombination-activating protein 1 (RA...	31	0.61
24	HELC1_HUMAN (Q8N3C0) Activating signal cointegrator 1 complex su...	31	0.61
25	BRCA1_MOUSE (P48754) Breast cancer type 1 susceptibility protein...	31	0.80
26	BRCA1_CANFA (Q95153) Breast cancer type 1 susceptibility protein...	31	0.80
27	TRAF5_MOUSE (P70191) TNF receptor-associated factor 5	31	0.80
28	BRCA1_BOVIN (Q864U1) Breast cancer type 1 susceptibility protein...	31	0.80
29	BRCA1_PONPY (Q6J6J0) Breast cancer type 1 susceptibility protein...	31	0.80
30	BRCA1_PANTR (Q9GKK8) Breast cancer type 1 susceptibility protein...	31	0.80
31	BRCA1_HUMAN (P38398) Breast cancer type 1 susceptibility protein...	31	0.80
32	BRCA1_GORGO (Q6J6I8) Breast cancer type 1 susceptibility protein...	31	0.80
33	SINA1_ARATH (P93748) Putative ubiquitin ligase SINAT1 (EC 6.3.2....	30	1.4
34	TRI40_RAT (Q6MFY8) Tripartite motif protein 40 (RING finger prot...	30	1.4
35	SINA2_ARATH (Q9M2P4) Ubiquitin ligase SINAT2 (EC 6.3.2.-) (Seven...	30	1.8
36	ZN313_PIG (Q6J1I8) Zinc finger protein 313	30	1.8
37	ZN313_PANTR (Q6J212) Zinc finger protein 313	30	1.8
38	ZN313_HUMAN (Q9Y508) Zinc finger protein 313 (RING finger protei...	30	1.8
39	TRAF3_MOUSE (Q60803) TNF receptor-associated factor 3 (CD40 rece...	30	1.8
40	A33_PLEWA (Q02084) Zinc-binding protein A33	30	1.8
41	ZN313_BOVIN (Q4U5R4) Zinc finger protein 313	30	1.8
42	BRCA1_MACMU (Q6J6I9) Breast cancer type 1 susceptibility protein...	30	1.8
43	TRI12_MOUSE (Q99PQ1) Tripartite motif protein 12	29	2.3
44	RAD18_CANAL (Q5A4N5) Postreplication repair ubiquitin-protein li...	29	2.3
45	Y411_BUCBP (Q89AA9) Hypothetical transport protein bbp_411	29	2.3
46	RAD5_KLULA (Q6CJM4) DNA repair protein RAD5 (EC 3.6.1.-)	29	2.3
47	E41L1_MOUSE (Q9Z2H5) Band 4.1-like protein 1 (Neuronal protein 4...	29	2.3
48	SM3L1_ARATH (Q9FF61) Putative SWI/SNF-related matrix-associated ...	29	3.0
49	E41L1_HUMAN (Q9H4G0) Band 4.1-like protein 1 (Neuronal protein 4...	29	3.0
50	TRI10_PANTR (Q7YR32) Tripartite motif protein 10 (RING finger pr...	29	3.0
51	TRI10_HUMAN (Q9UDY6) Tripartite motif protein 10 (RING finger pr...	29	3.0
52	TRI22_HUMAN (Q8IYM9) Tripartite motif protein 22 (RING finger pr...	29	3.0
53	PCGF6_HUMAN (Q9BYE7) Polycomb group RING finger protein 6 (RING ...	29	3.0
54	TRIM7_HUMAN (Q9C029) Tripartite motif protein 7 (Glycogenin-inte...	29	3.0
55	TRIM6_HUMAN (Q9C030) Tripartite motif protein 6 (RING finger pro...	29	3.0
56	SMRA3_MOUSE (Q6PCN7) SWI/SNF-related matrix-associated actin-dep...	28	4.0
57	YB1B_SCHPO (P87176) Hypothetical RING finger protein C3D6.11c in...	28	4.0
58	CCG8_NEUCR (Q01306) Clock-controlled protein 8	28	4.0
59	DTX3_MOUSE (Q80V91) Protein deltex-3 (Deltex-3) (Deltex3) (mDTX3)	28	4.0
60	DTX3_HUMAN (Q8N9I9) Protein deltex-3 (Deltex-3) (Deltex3)	28	4.0
61	TRIM4_HUMAN (Q9C037) Tripartite motif protein 4 (RING finger pro...	28	4.0
62	RNF41_XENLA (Q5FWL3) RING finger protein 41	28	4.0
63	RNF41_MOUSE (Q8BH75) RING finger protein 41	28	4.0
64	RNF41_HUMAN (Q9H4P4) RING finger protein 41	28	4.0
65	VPS8_YEAST (P39702) Vacuolar protein sorting-associated protein ...	28	4.0
66	TRIM6_MOUSE (Q8BGE7) Tripartite motif protein 6	28	4.0
67	ICP0_PRVIF (P29129) Trans-acting transcriptional protein ICP0 (E...	28	4.0
68	TRIM5_HUMAN (Q9C035) Tripartite motif protein 5 (EC 6.3.2.-) (RI...	28	4.0
69	TRAF3_HUMAN (Q13114) TNF receptor-associated factor 3 (CD40 rece...	28	5.2
70	TRIM7_MOUSE (Q923T7) Tripartite motif protein 7 (Glycogenin-inte...	28	5.2
71	PCGF6_MOUSE (Q99NA9) Polycomb group RING finger protein 6 (RING ...	28	5.2
72	IBRD2_HUMAN (Q7Z419) E3 ubiquitin ligase IBRDC2 (EC 6.3.2.-) (IB...	28	5.2
73	RPOBC_HELHP (Q7VJ82) Bifunctional DNA-directed RNA polymerase, b...	28	5.2
74	PCGF6_RAT (Q5XI70) Polycomb group RING finger protein 6 (RING fi...	28	5.2
75	LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor	28	5.2
76	TRI48_HUMAN (Q8IWZ4) Tripartite motif protein 48 (RING finger pr...	28	5.2
77	RAG1_BRARE (O13033) V(D)J recombination-activating protein 1 (RA...	28	6.8
78	TRI27_HUMAN (P14373) Zinc-finger protein RFP (Ret finger protein...	28	6.8
79	ZN313_RAT (Q6J2U6) Zinc finger protein 313	28	6.8
80	ZN313_MOUSE (Q9ET26) Zinc finger protein 313	28	6.8
81	RNF41_BRARE (Q7ZW16) RING finger protein 41	28	6.8
82	IBRD2_MOUSE (Q8BKD6) E3 ubiquitin ligase IBRDC2 (EC 6.3.2.-) (IB...	28	6.8
83	RFP2_MOUSE (Q9CYB0) Ret finger protein 2 (Putative tumor suppres...	28	6.8
84	RFP2_HUMAN (O60858) Ret finger protein 2 (Leukemia-associated pr...	28	6.8
85	DHR25_ORYSA (P30287) Dehydrin Rab25 (Drought-resistant protein 1...	28	6.8
86	TRI39_HUMAN (Q9HCM9) Tripartite motif protein 39 (RING finger pr...	28	6.8
87	ARI1_DROME (Q94981) Protein ariadne-1 (Ari-1)	28	6.8
88	TRI39_RAT (Q6MFZ5) Tripartite motif protein 39 (RING finger prot...	28	6.8
89	TRI39_MOUSE (Q9ESN2) Tripartite motif protein 39 (RING finger pr...	28	6.8
90	TRIM8_MOUSE (Q99PJ2) Tripartite motif protein 8 (RING finger pro...	27	8.8
91	TRIM8_HUMAN (Q9BZR9) Tripartite motif protein 8 (RING finger pro...	27	8.8
92	FORD1_AQUAE (O67251) Ferredoxin oxidoreductase 1 subunit forD (E...	27	8.8
93	C1QR1_RAT (Q9ET61) Complement component C1q receptor precursor (...	27	8.8
94	POL1_RRVC (Q6W8W4) RNA1 polyprotein (P1) [Contains: P1A protein ...	27	8.8
95	I12R1_HUMAN (P42701) Interleukin-12 receptor beta-1 chain precur...	27	8.8
96	RAD5_CANGA (Q6FY76) DNA repair protein RAD5 (EC 3.6.1.-)	27	8.8
97	ARI2_MOUSE (Q9Z1K6) Protein ariadne-2 homolog (ARI-2) (Triad1 pr...	27	8.8

>YEU6_YEAST (P40072) Hypothetical 30.8 kDa protein in SPR6-RPL23B intergenic|
           region
          Length = 274

 Score = 35.4 bits (80), Expect = 0.032
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +3

Query: 285 EYFCPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATTQAC 404
           +Y CP+C     P  AL   C H++C PCL  +  +++ C
Sbjct: 203 DYRCPIC--FEPPETALMTLCGHVFCCPCLFQMVNSSRTC 240

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>TRAF2_HUMAN (Q12933) TNF receptor-associated factor 2 (Tumor necrosis factor|
           type 2 receptor-associated protein 3)
          Length = 501

 Score = 35.4 bits (80), Expect = 0.032
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 276 LPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCLAYVAAT 392
           L  +Y C  CR ++      QAQC H YC  CLA + ++
Sbjct: 28  LEAKYLCSACRNVL--RRPFQAQCGHRYCSFCLASILSS 64

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>UB7I3_RAT (Q62921) Ubiquitin-conjugating enzyme 7-interacting protein 3 (RBCC|
           protein interacting with PKC) (Protein kinase C-binding
           protein beta-15)
          Length = 498

 Score = 34.7 bits (78), Expect = 0.055
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 261 LNIQTLPGEYFCPVCRTLIYPNEA-LQAQCTHLYCKPCL 374
           L + T P E  CPVC +++ P EA +  +C H +C+ CL
Sbjct: 261 LVLNTEPAE--CPVCYSVLAPGEAVVLRECLHTFCRECL 297

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>TRAF6_MOUSE (P70196) TNF receptor-associated factor 6|
          Length = 530

 Score = 34.7 bits (78), Expect = 0.055
 Identities = 25/73 (34%), Positives = 32/73 (43%)
 Frame = +3

Query: 156 CWAGVAGRRFSLPASEPLLDRS**GRTMGFDNECILNIQTLPGEYFCPVCRTLIYPNEAL 335
           C A V     S  AS   L  S      G+D E       L  +Y CP+C  L+   EA+
Sbjct: 27  CSAAVKDDSVSGSASTGNLSSSFMEEIQGYDVEFD---PPLESKYECPIC--LMALREAV 81

Query: 336 QAQCTHLYCKPCL 374
           Q  C H +CK C+
Sbjct: 82  QTPCGHRFCKACI 94

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>UB7I3_HUMAN (Q9BYM8) Ubiquitin-conjugating enzyme 7-interacting protein 3|
           (Hepatitis B virus X-associated protein 4)
           (HBV-associated factor 4) (RING finger protein 54)
          Length = 500

 Score = 34.7 bits (78), Expect = 0.055
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 261 LNIQTLPGEYFCPVCRTLIYPNEA-LQAQCTHLYCKPCL 374
           L + T P E  CPVC +++ P EA +  +C H +C+ CL
Sbjct: 263 LVLNTEPAE--CPVCYSVLAPGEAVVLRECLHTFCRECL 299

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>DG17_DICDI (P11467) Protein DG17|
          Length = 458

 Score = 34.3 bits (77), Expect = 0.072
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +3

Query: 249 NECILNIQTLP--GEYFCPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATTQAC 404
           N+ + N ++L    +Y CP+C   IY  +  Q +  H  CK C      T + C
Sbjct: 10  NDILFNQESLQKKNKYTCPICFEFIYKKQIYQCKSGHHACKECWEKSLETKKEC 63

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>TRAF6_HUMAN (Q9Y4K3) TNF receptor-associated factor 6 (Interleukin 1 signal|
           transducer) (RING finger protein 85)
          Length = 522

 Score = 34.3 bits (77), Expect = 0.072
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 276 LPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCL 374
           L  +Y CP+C  L+   EA+Q  C H +CK C+
Sbjct: 64  LESKYECPIC--LMALREAVQTPCGHRFCKACI 94

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>UB7I3_MOUSE (Q9WUB0) Ubiquitin-conjugating enzyme 7-interacting protein 3|
           (UbcM4-interacting protein 28)
          Length = 498

 Score = 33.9 bits (76), Expect = 0.094
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 261 LNIQTLPGEYFCPVCRTLIYPNEA-LQAQCTHLYCKPCL 374
           L + T P E  CPVC +++ P EA +  +C H +C+ CL
Sbjct: 261 LVLNTEPTE--CPVCYSVLAPGEAVVLRECLHTFCRECL 297

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>TRI50_MOUSE (Q810I2) Tripartite motif protein 50|
          Length = 483

 Score = 33.9 bits (76), Expect = 0.094
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 261 LNIQTLPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCL 374
           L +  L  +  CP+C  +    E L  QC H YCK CL
Sbjct: 5   LTVPELQDQLQCPICLEVF--KEPLMLQCGHSYCKDCL 40

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>TRAF2_MOUSE (P39429) TNF receptor-associated factor 2|
          Length = 501

 Score = 33.5 bits (75), Expect = 0.12
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 4/49 (8%)
 Frame = +3

Query: 276 LPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCLAYVAAT----TQACSY 410
           L  +Y C  C+ ++      QAQC H YC  CL  + ++      AC Y
Sbjct: 28  LEAKYLCSACKNIL--RRPFQAQCGHRYCSFCLTSILSSGPQNCAACVY 74

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>TRI50_RAT (Q810I1) Tripartite motif protein 50|
          Length = 483

 Score = 33.5 bits (75), Expect = 0.12
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 261 LNIQTLPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCL 374
           L +  L  +  CP+C  +    E L  QC H YCK CL
Sbjct: 5   LTVPELQDQLQCPICLEVF--KEPLMLQCGHSYCKNCL 40

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>TRI74_HUMAN (Q86UV6) Tripartite motif protein 74 (Tripartite motif protein 50C)|
          Length = 250

 Score = 32.3 bits (72), Expect = 0.27
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 294 CPVCRTLIYPNEALQAQCTHLYCKPCL 374
           CP+C  +    E+L  QC H YCK CL
Sbjct: 16  CPICLEVF--KESLMLQCGHSYCKGCL 40

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>TRI73_HUMAN (Q86UV7) Tripartite motif protein 73 (Tripartite motif protein 50B)|
          Length = 250

 Score = 32.3 bits (72), Expect = 0.27
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 294 CPVCRTLIYPNEALQAQCTHLYCKPCL 374
           CP+C  +    E+L  QC H YCK CL
Sbjct: 16  CPICLEVF--KESLMLQCGHSYCKGCL 40

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>BRCA1_RAT (O54952) Breast cancer type 1 susceptibility protein homolog|
          Length = 1817

 Score = 32.3 bits (72), Expect = 0.27
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 294 CPVCRTLIYPNEALQAQCTHLYCKPCL 374
           CP+C  LI   E +  QC H++CK C+
Sbjct: 24  CPICLELI--KEPVSTQCDHIFCKFCM 48

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>TRI50_PIG (Q865W2) Tripartite motif protein 50|
          Length = 486

 Score = 32.3 bits (72), Expect = 0.27
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 261 LNIQTLPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCL 374
           +++  L     CPVC  +    E L  QC H YCK CL
Sbjct: 5   VSVPELEDRLQCPVCLEVF--KEPLMLQCGHSYCKGCL 40

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>BRE1_CAEBR (Q60YN5) Ubiquitin-protein ligase bre-1 (EC 6.3.2.-) (RING finger|
           protein rfp-1)
          Length = 828

 Score = 32.0 bits (71), Expect = 0.36
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 294 CPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATTQ 398
           CP C+T   P + +  +C HL+C+ C+  +  T Q
Sbjct: 776 CPSCKTR--PKDCIMLKCYHLFCETCIKTMYDTRQ 808

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>TRI49_HUMAN (Q9NS80) Tripartite motif protein 49 (RING finger protein 18)|
           (Testis-specific ring-finger protein)
          Length = 452

 Score = 32.0 bits (71), Expect = 0.36
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 267 IQTLPGEYFCPVCRTLIYPNEALQAQCTHLYCKPC 371
           +Q   GE  CP+C    Y  + +   C H +C+PC
Sbjct: 6   LQVFQGELICPLCMN--YFIDPVTIDCGHSFCRPC 38

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>TRI50_HUMAN (Q86XT4) Tripartite motif protein 50|
          Length = 487

 Score = 32.0 bits (71), Expect = 0.36
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 294 CPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATTQA 401
           CP+C  +    E L  QC H YCK CL  ++    A
Sbjct: 16  CPICLEVF--KEPLMLQCGHSYCKGCLVSLSCHLDA 49

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>BRE1_CAEEL (P34537) Ubiquitin-protein ligase bre-1 (EC 6.3.2.-) (RING finger|
           protein rfp-1)
          Length = 837

 Score = 32.0 bits (71), Expect = 0.36
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 294 CPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATTQ 398
           CP C+T   P + +  +C HL+C+ C+  +  T Q
Sbjct: 785 CPSCKTR--PKDCIMLKCYHLFCETCIKTMYDTRQ 817

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>TRI40_HUMAN (Q6P9F5) Tripartite motif 40 protein (RING finger protein 35)|
          Length = 258

 Score = 31.6 bits (70), Expect = 0.47
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 285 EYFCPVCRTLIYPNEALQAQCTHLYCKPCL 374
           E  CP+C+  +   EA+   C HL+C+ CL
Sbjct: 11  EGVCPICQESL--KEAVSTNCGHLFCRVCL 38

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>TRI30_MOUSE (P15533) Tripartite motif protein 30 (Down regulatory protein of|
           interleukin 2 receptor)
          Length = 496

 Score = 31.6 bits (70), Expect = 0.47
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +3

Query: 267 IQTLPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCL 374
           ++ +  E  CP+C  L+   E + A C H +C+ C+
Sbjct: 6   LEMIKEEVTCPICLELL--KEPVSADCNHSFCRACI 39

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>TRI40_PANTR (Q1XHT8) Tripartite motif 40 protein|
          Length = 229

 Score = 31.6 bits (70), Expect = 0.47
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 285 EYFCPVCRTLIYPNEALQAQCTHLYCKPCL 374
           E  CP+C+  +   EA+   C HL+C+ CL
Sbjct: 11  EGVCPICQESL--KEAVSTNCGHLFCRVCL 38

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>RAG1_ONCMY (Q91187) V(D)J recombination-activating protein 1 (RAG-1)|
          Length = 1073

 Score = 31.2 bits (69), Expect = 0.61
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +3

Query: 294 CPVCRTLIYPNEALQAQCTHLYCKPCLA 377
           C VC  L+  +E +Q+ C HL+C+ C+A
Sbjct: 310 CQVCDHLL--SEPVQSPCRHLFCRSCIA 335

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>HELC1_HUMAN (Q8N3C0) Activating signal cointegrator 1 complex subunit 3 (EC|
            3.6.1.-) (ASC-1 complex subunit p200) (Trip4 complex
            subunit p200) (Helicase, ATP binding 1)
          Length = 2202

 Score = 31.2 bits (69), Expect = 0.61
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +3

Query: 261  LNIQTLPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATTQ 398
            ++IQ  PG+++CP   ++  P  A QA  +H   KP L +V++  Q
Sbjct: 1524 VHIQGFPGQHYCPRMASMNKP--AFQAIRSHSPAKPVLIFVSSRRQ 1567

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>BRCA1_MOUSE (P48754) Breast cancer type 1 susceptibility protein homolog|
          Length = 1812

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 294 CPVCRTLIYPNEALQAQCTHLYCKPCL 374
           CP+C  LI   E +  +C H++CK C+
Sbjct: 24  CPICLELI--KEPVSTKCDHIFCKFCM 48

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>BRCA1_CANFA (Q95153) Breast cancer type 1 susceptibility protein homolog|
          Length = 1878

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 294 CPVCRTLIYPNEALQAQCTHLYCKPCL 374
           CP+C  LI   E +  +C H++CK C+
Sbjct: 24  CPICLELI--KEPVSTKCDHIFCKFCM 48

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>TRAF5_MOUSE (P70191) TNF receptor-associated factor 5|
          Length = 558

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
 Frame = +3

Query: 243 FDNECILNIQTLPGEYFCPVCRTLIYPNEALQAQC-------THLYCK 365
           F  +CI +++ L     CPV + +I P E  +  C        H+YCK
Sbjct: 64  FCQQCIRSLRELNSVPICPVDKEVIKPQEVFKDNCCKREVLNLHVYCK 111

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>BRCA1_BOVIN (Q864U1) Breast cancer type 1 susceptibility protein homolog|
          Length = 1849

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 294 CPVCRTLIYPNEALQAQCTHLYCKPCL 374
           CP+C  LI   E +  +C H++CK C+
Sbjct: 24  CPICLELI--KEPVSTKCDHIFCKFCM 48

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>BRCA1_PONPY (Q6J6J0) Breast cancer type 1 susceptibility protein homolog|
          Length = 1863

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 294 CPVCRTLIYPNEALQAQCTHLYCKPCL 374
           CP+C  LI   E +  +C H++CK C+
Sbjct: 24  CPICLELI--KEPVSTKCDHIFCKFCM 48

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>BRCA1_PANTR (Q9GKK8) Breast cancer type 1 susceptibility protein homolog|
          Length = 1863

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 294 CPVCRTLIYPNEALQAQCTHLYCKPCL 374
           CP+C  LI   E +  +C H++CK C+
Sbjct: 24  CPICLELI--KEPVSTKCDHIFCKFCM 48

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>BRCA1_HUMAN (P38398) Breast cancer type 1 susceptibility protein (RING finger|
           protein 53)
          Length = 1863

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 294 CPVCRTLIYPNEALQAQCTHLYCKPCL 374
           CP+C  LI   E +  +C H++CK C+
Sbjct: 24  CPICLELI--KEPVSTKCDHIFCKFCM 48

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>BRCA1_GORGO (Q6J6I8) Breast cancer type 1 susceptibility protein homolog|
          Length = 1863

 Score = 30.8 bits (68), Expect = 0.80
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 294 CPVCRTLIYPNEALQAQCTHLYCKPCL 374
           CP+C  LI   E +  +C H++CK C+
Sbjct: 24  CPICLELI--KEPVSTKCDHIFCKFCM 48

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>SINA1_ARATH (P93748) Putative ubiquitin ligase SINAT1 (EC 6.3.2.-) (Seven in|
           absentia homolog 1)
          Length = 305

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 15/39 (38%), Positives = 16/39 (41%)
 Frame = +3

Query: 294 CPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATTQACSY 410
           CPVC  L+YP    Q    H  C  C   V  T   C Y
Sbjct: 57  CPVCTNLMYP-PIHQCPNGHTLCSSCKLRVQNTCPTCRY 94

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>TRI40_RAT (Q6MFY8) Tripartite motif protein 40 (RING finger protein 35)|
          Length = 247

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 294 CPVCRTLIYPNEALQAQCTHLYCKPCL 374
           CP+C   +   EA+   C HL+C+ CL
Sbjct: 12  CPICLDPL--KEAVSTDCRHLFCRMCL 36

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>SINA2_ARATH (Q9M2P4) Ubiquitin ligase SINAT2 (EC 6.3.2.-) (Seven in absentia|
           homolog 2)
          Length = 308

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 15/39 (38%), Positives = 16/39 (41%)
 Frame = +3

Query: 294 CPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATTQACSY 410
           CPVC  L+YP    Q    H  C  C   V  T   C Y
Sbjct: 60  CPVCTNLMYP-PIHQCPNGHTLCSNCKLRVQNTCPTCRY 97

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>ZN313_PIG (Q6J1I8) Zinc finger protein 313|
          Length = 228

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 282 GEYFCPVCRTLIYPNEALQAQCTHLYCKPCL 374
           G + CPVC  +    + +Q  C H++C  CL
Sbjct: 25  GRFTCPVCLEVY--EKPVQVPCGHVFCSACL 53

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>ZN313_PANTR (Q6J212) Zinc finger protein 313|
          Length = 228

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 282 GEYFCPVCRTLIYPNEALQAQCTHLYCKPCL 374
           G + CPVC  +    + +Q  C H++C  CL
Sbjct: 25  GRFTCPVCLEVY--EKPVQVPCGHVFCSACL 53

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>ZN313_HUMAN (Q9Y508) Zinc finger protein 313 (RING finger protein 114)|
          Length = 228

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 282 GEYFCPVCRTLIYPNEALQAQCTHLYCKPCL 374
           G + CPVC  +    + +Q  C H++C  CL
Sbjct: 25  GRFTCPVCLEVY--EKPVQVPCGHVFCSACL 53

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>TRAF3_MOUSE (Q60803) TNF receptor-associated factor 3 (CD40 receptor-associated|
           factor 1) (CRAF1) (TRAFAMN)
          Length = 567

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 11/43 (25%), Positives = 26/43 (60%)
 Frame = +3

Query: 267 IQTLPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATT 395
           ++T+  +Y C  CR ++   +  Q +C H +C+ C+A + +++
Sbjct: 43  VKTVEDKYKCEKCRLVLCNPK--QTECGHRFCESCMAALLSSS 83

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>A33_PLEWA (Q02084) Zinc-binding protein A33|
          Length = 624

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = +3

Query: 294 CPVCRTLIYPNEALQAQCTHLYCKPCL--AYVAATTQAC 404
           CP+CR+L    E +  +C H +CK C+  ++ +A+  +C
Sbjct: 162 CPLCRSLF--KEPVILECGHNFCKHCIDKSWESASAFSC 198

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>ZN313_BOVIN (Q4U5R4) Zinc finger protein 313|
          Length = 230

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 282 GEYFCPVCRTLIYPNEALQAQCTHLYCKPCL 374
           G + CPVC  +    + +Q  C H++C  CL
Sbjct: 27  GRFTCPVCLEVY--EKPVQVPCGHVFCSACL 55

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>BRCA1_MACMU (Q6J6I9) Breast cancer type 1 susceptibility protein homolog|
          Length = 1863

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +3

Query: 294 CPVCRTLIYPNEALQAQCTHLYCKPCL 374
           CP+C  LI   E +  +C H++C+ C+
Sbjct: 24  CPICLELI--KEPVSTKCDHIFCRFCM 48

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>TRI12_MOUSE (Q99PQ1) Tripartite motif protein 12|
          Length = 284

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 267 IQTLPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCL 374
           ++ L  E  CPVC  L+   + + A C H +C+ C+
Sbjct: 6   MKNLKEEVTCPVCLNLMV--KPVSADCGHTFCQGCI 39

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>RAD18_CANAL (Q5A4N5) Postreplication repair ubiquitin-protein ligase E3 RAD18|
           (EC 6.-.-.-)
          Length = 378

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 294 CPVCRTLIYPNEALQAQCTHLYCKPCL 374
           C +C+ L+  N  ++ QC H YC  C+
Sbjct: 29  CYICKDLL--NAPVRTQCDHTYCSQCI 53

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>Y411_BUCBP (Q89AA9) Hypothetical transport protein bbp_411|
          Length = 394

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
 Frame = +1

Query: 247 IMNVF*IYKLFLVN----IFALFVGHSYTPTKL 333
           I+N+F  Y LFL+N    IF LF G  Y P  L
Sbjct: 158 IVNMFGFYCLFLINSLLSIFCLFFGMFYIPASL 190

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>RAD5_KLULA (Q6CJM4) DNA repair protein RAD5 (EC 3.6.1.-)|
          Length = 1114

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +3

Query: 294 CPVCRT-LIYPNEALQ-AQCTHLYCKPCLA 377
           C +C T  I P  A+   +C H +C+PCLA
Sbjct: 858 CAICTTECIEPLSAVSITECLHTFCEPCLA 887

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>E41L1_MOUSE (Q9Z2H5) Band 4.1-like protein 1 (Neuronal protein 4.1) (4.1N)|
          Length = 879

 Score = 29.3 bits (64), Expect = 2.3
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 259 IHSLSKPIVRPH*LLSSKGSDAGRENRLPATPAQQQDKGS 140
           I+ L + +  P+  L  +  D  RE RLP++PA    KG+
Sbjct: 511 INELKRTLKEPNSKLIHRDRDWDRERRLPSSPASPSPKGT 550

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>SM3L1_ARATH (Q9FF61) Putative SWI/SNF-related matrix-associated actin-dependent|
           regulator of chromatin subfamily A member 3-like 1 (EC
           3.6.1.-) (SMARCA3-like protein 1)
          Length = 881

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +3

Query: 285 EYFCPVCRTLIYPNEALQAQCTHLYCKPCL 374
           ++ CP+C  +  P   +  +C H++C+ C+
Sbjct: 632 DFDCPIC--ISPPTNIIITRCAHIFCRACI 659

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>E41L1_HUMAN (Q9H4G0) Band 4.1-like protein 1 (Neuronal protein 4.1) (4.1N)|
          Length = 881

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 259 IHSLSKPIVRPH*LLSSKGSDAGRENRLPATPAQQQDKGS 140
           I+ L + +  P+  L  +  D  RE RLP++PA    KG+
Sbjct: 511 INELKRTLKEPNSKLIHRDRDWERERRLPSSPASPSPKGT 550

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>TRI10_PANTR (Q7YR32) Tripartite motif protein 10 (RING finger protein 9)|
           (B30-RING finger protein)
          Length = 481

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 264 NIQTLPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCL 374
           ++ +L  E  CP+C+  +   E +   C H +C+ CL
Sbjct: 6   SVTSLADEVNCPICQGTL--REPVTIDCGHNFCRACL 40

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>TRI10_HUMAN (Q9UDY6) Tripartite motif protein 10 (RING finger protein 9)|
           (B30-RING finger protein)
          Length = 481

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 264 NIQTLPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCL 374
           ++ +L  E  CP+C+  +   E +   C H +C+ CL
Sbjct: 6   SVTSLADEVNCPICQGTL--REPVTIDCGHNFCRACL 40

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>TRI22_HUMAN (Q8IYM9) Tripartite motif protein 22 (RING finger protein 94) (50|
           kDa-stimulated trans-acting factor) (Staf-50)
          Length = 498

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 285 EYFCPVCRTLIYPNEALQAQCTHLYCKPCL 374
           E  CP+C  L+   E L   C H +C+ C+
Sbjct: 12  EVTCPICLELL--TEPLSLDCGHSFCQACI 39

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>PCGF6_HUMAN (Q9BYE7) Polycomb group RING finger protein 6 (RING finger protein|
           134) (Mel18 and Bmi1-like RING finger)
          Length = 352

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 10/43 (23%), Positives = 21/43 (48%)
 Frame = +3

Query: 246 DNECILNIQTLPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCL 374
           + E ++N+  L     C +C+  +     +  +C H +CK C+
Sbjct: 120 EEERLINLSELTPYILCSICKGYLIDATTI-TECLHTFCKSCI 161

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>TRIM7_HUMAN (Q9C029) Tripartite motif protein 7 (Glycogenin-interacting|
           protein) (RING finger protein 90)
          Length = 511

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = +3

Query: 240 GFDNECILNIQTLPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCL 374
           G   E +     L GE  C +C  L    E +  +C H +C+ C+
Sbjct: 11  GTGAEALALAAELQGEATCSICLELF--REPVSVECGHSFCRACI 53

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>TRIM6_HUMAN (Q9C030) Tripartite motif protein 6 (RING finger protein 89)|
          Length = 488

 Score = 28.9 bits (63), Expect = 3.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 285 EYFCPVCRTLIYPNEALQAQCTHLYCKPCL 374
           E  CP+C  L+   E L   C H +C+ C+
Sbjct: 12  EVTCPICLELL--TEPLSIDCGHSFCQACI 39

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>SMRA3_MOUSE (Q6PCN7) SWI/SNF-related matrix-associated actin-dependent|
           regulator of chromatin subfamily A member 3 (EC 3.6.1.-)
           (Sucrose nonfermenting protein 2-like 3) (TNF-response
           element-binding protein) (P113)
          Length = 1003

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 294 CPVCR-TLIYPNEALQAQCTHLYCKPCLAYVAATTQ 398
           C +C  +L +P   +   C H++CKPC+  V  + Q
Sbjct: 754 CAICLDSLTFP---VITHCAHVFCKPCICQVIHSEQ 786

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>YB1B_SCHPO (P87176) Hypothetical RING finger protein C3D6.11c in chromosome II|
          Length = 269

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 243 FDNECILN-IQTLPGEYFCPVCRTLIYPNEAL 335
           F N CIL+ + T      CPVCR  ++PN+ +
Sbjct: 225 FCNFCILSALGTTAATQKCPVCRRKVHPNKVI 256

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>CCG8_NEUCR (Q01306) Clock-controlled protein 8|
          Length = 661

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 21/82 (25%), Positives = 30/82 (36%)
 Frame = +1

Query: 1   STVPGSVAAETPPXXXXXXXXXXXXXXQSAPAFSKRSN*FVSRSPSPTPCPAAGLVWPGG 180
           S   GS   E PP               S  + +  S+   +  P+PTP P    VWP  
Sbjct: 150 SLFDGSPTTELPPIQLDRKRSSSDHSLPSIASLNVGSS-LPTLQPTPTPQPPPKFVWPNS 208

Query: 181 DSLCRHQNPYWIEVSEAGQWVS 246
           + L    + Y+ E    G+  S
Sbjct: 209 NPL----SAYYAESDNDGRGAS 226

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>DTX3_MOUSE (Q80V91) Protein deltex-3 (Deltex-3) (Deltex3) (mDTX3)|
          Length = 347

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 285 EYFCPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATTQAC 404
           E  CP+C   I   + L+ +C H +C+ C+       +AC
Sbjct: 161 ETTCPICLGEIQNAKTLE-KCRHSFCEGCITRALQVKKAC 199

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>DTX3_HUMAN (Q8N9I9) Protein deltex-3 (Deltex-3) (Deltex3)|
          Length = 347

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +3

Query: 285 EYFCPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATTQAC 404
           E  CP+C   I   + L+ +C H +C+ C+       +AC
Sbjct: 161 ESTCPICLGEIQNAKTLE-KCRHSFCEGCITRALQVKKAC 199

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>TRIM4_HUMAN (Q9C037) Tripartite motif protein 4 (RING finger protein 87)|
          Length = 500

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +3

Query: 261 LNIQTLPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCL 374
           +  + +  E  CP+C  L Y  + +  +C H +C+ CL
Sbjct: 1   MEAEDIQEELTCPIC--LDYFQDPVSIECGHNFCRGCL 36

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>RNF41_XENLA (Q5FWL3) RING finger protein 41|
          Length = 317

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 285 EYFCPVCRTLIYPNEALQA-QCTHLYCKPCLAYVAATTQAC 404
           +  CP+C  ++   E +QA  C H +C  C+    +  Q C
Sbjct: 15  DLICPICSGVL--EEPVQAPHCEHAFCNACITQWFSQQQTC 53

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>RNF41_MOUSE (Q8BH75) RING finger protein 41|
          Length = 317

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 285 EYFCPVCRTLIYPNEALQA-QCTHLYCKPCLAYVAATTQAC 404
           +  CP+C  ++   E +QA  C H +C  C+    +  Q C
Sbjct: 15  DLICPICSGVL--EEPVQAPHCEHAFCNACITQWFSQQQTC 53

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>RNF41_HUMAN (Q9H4P4) RING finger protein 41|
          Length = 317

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 285 EYFCPVCRTLIYPNEALQA-QCTHLYCKPCLAYVAATTQAC 404
           +  CP+C  ++   E +QA  C H +C  C+    +  Q C
Sbjct: 15  DLICPICSGVL--EEPVQAPHCEHAFCNACITQWFSQQQTC 53

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>VPS8_YEAST (P39702) Vacuolar protein sorting-associated protein VPS8|
          Length = 1274

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +3

Query: 240  GFDNECILNIQTLPGEYFCPVCRT 311
            GF   C+ N+   P EY C +C+T
Sbjct: 1244 GFHQTCLENLAQKPDEYSCLICQT 1267

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>TRIM6_MOUSE (Q8BGE7) Tripartite motif protein 6|
          Length = 488

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 285 EYFCPVCRTLIYPNEALQAQCTHLYCKPCL 374
           E  CP+C  L+   E L   C H +C+ C+
Sbjct: 12  EVTCPICLELL--TEPLSIDCGHSFCQVCI 39

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>ICP0_PRVIF (P29129) Trans-acting transcriptional protein ICP0 (Early protein|
           0) (EP0)
          Length = 410

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 294 CPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATTQAC 404
           CP+C   +   EA    C H +C  C+     T+ AC
Sbjct: 46  CPICLD-VAATEAQTLPCMHKFCLDCIQRWTLTSTAC 81

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>TRIM5_HUMAN (Q9C035) Tripartite motif protein 5 (EC 6.3.2.-) (RING finger|
           protein 88)
          Length = 493

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 285 EYFCPVCRTLIYPNEALQAQCTHLYCKPCL 374
           E  CP+C  L+   + L   C H +C+ CL
Sbjct: 12  EVTCPICLELL--TQPLSLDCGHSFCQACL 39

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>TRAF3_HUMAN (Q13114) TNF receptor-associated factor 3 (CD40 receptor-associated|
           factor 1) (CRAF1) (CD40-binding protein) (CD40BP)
           (LMP1-associated protein) (LAP1) (CAP-1)
          Length = 568

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 10/43 (23%), Positives = 25/43 (58%)
 Frame = +3

Query: 267 IQTLPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATT 395
           ++T+  +Y C  C  ++   +  Q +C H +C+ C+A + +++
Sbjct: 44  VKTVEDKYKCEKCHLVLCSPK--QTECGHRFCESCMAALLSSS 84

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>TRIM7_MOUSE (Q923T7) Tripartite motif protein 7 (Glycogenin-interacting|
           protein)
          Length = 510

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +3

Query: 276 LPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCL 374
           L GE  C +C  L +  E +  +C H +C+ C+
Sbjct: 23  LQGEATCSIC--LEFFREPVSVECGHSFCRACI 53

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>PCGF6_MOUSE (Q99NA9) Polycomb group RING finger protein 6 (RING finger protein|
           134) (Mel18 and Bmi1-like RING finger)
          Length = 353

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 10/43 (23%), Positives = 21/43 (48%)
 Frame = +3

Query: 246 DNECILNIQTLPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCL 374
           + E ++N+  L     C +C+  +     +  +C H +CK C+
Sbjct: 121 EEERLINLVELTPYILCSICKGYLIDATTI-TECLHTFCKSCI 162

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>IBRD2_HUMAN (Q7Z419) E3 ubiquitin ligase IBRDC2 (EC 6.3.2.-) (IBR|
           domain-containing protein 2) (p53-inducible RING finger
           protein)
          Length = 303

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
 Frame = +3

Query: 294 CPVCRTLIYPNEA----LQAQCTHLYCKPCL 374
           CPVCR  I  NE     +   C H +C  CL
Sbjct: 193 CPVCRVYIERNEGCAQMMCKNCKHTFCWYCL 223

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>RPOBC_HELHP (Q7VJ82) Bifunctional DNA-directed RNA polymerase, beta and beta'|
            chain (EC 2.7.7.6) [Includes: DNA-directed RNA polymerase
            beta chain (Transcriptase beta chain) (RNA polymerase
            beta subunit); DNA-directed RNA polymerase beta' chain
            (Transcri
          Length = 2894

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = -2

Query: 321  GI*VSDKQGKNIHQEEFVYSEYI 253
            G+ VS+++ +N HQ+ FV +EY+
Sbjct: 2567 GLTVSEQEDENTHQKNFVINEYV 2589

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>PCGF6_RAT (Q5XI70) Polycomb group RING finger protein 6 (RING finger protein|
           134)
          Length = 351

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 10/43 (23%), Positives = 21/43 (48%)
 Frame = +3

Query: 246 DNECILNIQTLPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCL 374
           + E ++N+  L     C +C+  +     +  +C H +CK C+
Sbjct: 119 EEERLINLVELTPYILCSICKGYLIDATTI-TECLHTFCKSCI 160

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>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor|
          Length = 3695

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = +3

Query: 294  CPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATTQAC 404
            C +C    Y N  L   CT   C PC       T+AC
Sbjct: 2003 CEICAPGFYGNALLPGNCTRCDCTPC------GTEAC 2033

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>TRI48_HUMAN (Q8IWZ4) Tripartite motif protein 48 (RING finger protein 101)|
          Length = 375

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 270 QTLPGEYFCPVCRTLIYPNEALQAQCTHLYCKPC 371
           Q    E  CP+C    Y  + +   C H +C+PC
Sbjct: 7   QVFQRELTCPICMN--YFIDPVTIDCGHSFCRPC 38

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>RAG1_BRARE (O13033) V(D)J recombination-activating protein 1 (RAG-1)|
          Length = 1057

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 294 CPVCRTLIYPNEALQAQCTHLYCKPCL 374
           C VC  L+  ++ +Q+ C HL+C+ C+
Sbjct: 296 CQVCDHLL--SDPVQSPCRHLFCRLCI 320

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>TRI27_HUMAN (P14373) Zinc-finger protein RFP (Ret finger protein) (Tripartite|
           motif protein 27) (RING finger protein 76)
          Length = 513

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = +3

Query: 270 QTLPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCLAYVAATTQ 398
           + L  E  CPVC  L Y  E +   C H  C  CLA    T +
Sbjct: 8   ECLQQETTCPVC--LQYFAEPMMLDCGHNICCACLARCWGTAE 48

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>ZN313_RAT (Q6J2U6) Zinc finger protein 313|
          Length = 229

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 288 YFCPVCRTLIYPNEALQAQCTHLYCKPCL 374
           + CPVC  +    + +Q  C H++C  CL
Sbjct: 28  FTCPVCLEVF--EKPVQVPCGHVFCSACL 54

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>ZN313_MOUSE (Q9ET26) Zinc finger protein 313|
          Length = 229

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 288 YFCPVCRTLIYPNEALQAQCTHLYCKPCL 374
           + CPVC  +    + +Q  C H++C  CL
Sbjct: 28  FTCPVCLEVF--EKPVQVPCGHVFCSACL 54

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>RNF41_BRARE (Q7ZW16) RING finger protein 41|
          Length = 318

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 285 EYFCPVCRTLIYPNEALQA-QCTHLYCKPCLAYVAATTQAC 404
           +  CP+C  ++   E ++A  C H +C  C+    A  Q C
Sbjct: 15  DLLCPICSGVL--EEPVRAPHCEHAFCNACITQWFAQQQIC 53

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>IBRD2_MOUSE (Q8BKD6) E3 ubiquitin ligase IBRDC2 (EC 6.3.2.-) (IBR|
           domain-containing protein 2)
          Length = 301

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
 Frame = +3

Query: 294 CPVCRTLIYPNEA----LQAQCTHLYCKPCL 374
           CPVCR  I  NE     +   C H +C  CL
Sbjct: 191 CPVCRIYIERNEGCAQMMCKNCKHTFCWYCL 221

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>RFP2_MOUSE (Q9CYB0) Ret finger protein 2 (Putative tumor suppressor RFP2)|
           (Tripartite motif-containing protein 13)
          Length = 407

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 267 IQTLPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCL 374
           ++ L  +  CP+C +L      L   C+H +CK CL
Sbjct: 1   MELLEEDLTCPICCSLFDDPRVLP--CSHNFCKKCL 34

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>RFP2_HUMAN (O60858) Ret finger protein 2 (Leukemia-associated protein 5)|
           (B-cell chronic lymphocytic leukemia tumor suppressor
           Leu5) (Putative tumor suppressor RFP2) (Tripartite motif
           protein 13) (RING finger protein 77)
          Length = 407

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 267 IQTLPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCL 374
           ++ L  +  CP+C +L      L   C+H +CK CL
Sbjct: 1   MELLEEDLTCPICCSLFDDPRVLP--CSHNFCKKCL 34

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>DHR25_ORYSA (P30287) Dehydrin Rab25 (Drought-resistant protein 1) (rDRP1)|
          Length = 228

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -3

Query: 194 RQRESPPGHTSPAAGQGVGEG 132
           ++ +   GHT+PAAG G G G
Sbjct: 182 QEEQKQAGHTAPAAGTGTGTG 202

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>TRI39_HUMAN (Q9HCM9) Tripartite motif protein 39 (RING finger protein 23)|
           (Testis-abundant finger protein)
          Length = 518

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 267 IQTLPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCL 374
           ++ L  E  C VC  L Y  E +  +C H +CK C+
Sbjct: 20  LENLQVEASCSVC--LEYLKEPVIIECGHNFCKACI 53

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>ARI1_DROME (Q94981) Protein ariadne-1 (Ari-1)|
          Length = 503

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = +3

Query: 294 CPVCRTLIYPNEALQAQCTHLYCKPC 371
           C +C + + P+     +C H +C PC
Sbjct: 133 CEICFSQLPPDSMAGLECGHRFCMPC 158

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>TRI39_RAT (Q6MFZ5) Tripartite motif protein 39 (RING finger protein 23)|
          Length = 488

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 267 IQTLPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCL 374
           ++ L  E  C VC  L Y  E +  +C H +CK C+
Sbjct: 20  LENLQVEASCSVC--LEYLKEPVIIECGHNFCKACI 53

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>TRI39_MOUSE (Q9ESN2) Tripartite motif protein 39 (RING finger protein 23)|
           (Testis-abundant finger protein)
          Length = 488

 Score = 27.7 bits (60), Expect = 6.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 267 IQTLPGEYFCPVCRTLIYPNEALQAQCTHLYCKPCL 374
           ++ L  E  C VC  L Y  E +  +C H +CK C+
Sbjct: 20  LENLQVEASCSVC--LEYLKEPVIIECGHNFCKACI 53

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>TRIM8_MOUSE (Q99PJ2) Tripartite motif protein 8 (RING finger protein 27)|
           (Glioblastoma-expressed RING finger protein)
          Length = 551

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 285 EYFCPVCRTLIYPNEALQAQCTHLYCKPCL 374
           E  CP+C  +    E +Q  C H +C+ C+
Sbjct: 12  ELICPICLHVFV--EPVQLPCKHNFCRGCI 39

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>TRIM8_HUMAN (Q9BZR9) Tripartite motif protein 8 (RING finger protein 27)|
           (Glioblastoma-expressed RING finger protein)
          Length = 551

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 285 EYFCPVCRTLIYPNEALQAQCTHLYCKPCL 374
           E  CP+C  +    E +Q  C H +C+ C+
Sbjct: 12  ELICPICLHVFV--EPVQLPCKHNFCRGCI 39

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>FORD1_AQUAE (O67251) Ferredoxin oxidoreductase 1 subunit forD (EC 1.-.-.-)|
           (Ferredoxin oxidoreductase 1 delta subunit)
          Length = 79

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 291 FCPVCRTLIYPNEALQAQCTHLYCKPC 371
           FCP   TL+Y +E   A    L CK C
Sbjct: 23  FCPEPNTLMYTDEGHHAYVNTLRCKGC 49

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>C1QR1_RAT (Q9ET61) Complement component C1q receptor precursor (Complement|
           component 1, q subcomponent, receptor 1) (C1qRp)
           (C1qR(p)) (C1q/MBL/SPA receptor) (CD93 antigen) (Cell
           surface antigen AA4)
          Length = 643

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 184 NRLPATPAQQQDKGSGRE 131
           + LPA P Q++DKG G+E
Sbjct: 468 SELPARPPQKEDKGDGKE 485

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>POL1_RRVC (Q6W8W4) RNA1 polyprotein (P1) [Contains: P1A protein (1A)|
           (Protease cofactor); Putative ATP-dependent helicase (EC
           3.6.1.-) (NTP-binding protein) (NTB) (1B)
           (Membrane-binding protein); Viral genome-linked protein
           (1C-VPg); Picornain 3C-like pr
          Length = 2367

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = -3

Query: 401 GLCGCCYISQARFAVEMCALSLQSFVGVYECPTNRAKIFTRKSL 270
           G+ GC YI      + + + S+++F+GV  CP     +   +SL
Sbjct: 578 GILGCGYILAKCEDLAVVSASIRAFLGVLLCPPTMEAVDLNQSL 621

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>I12R1_HUMAN (P42701) Interleukin-12 receptor beta-1 chain precursor|
           (IL-12R-beta1) (Interleukin-12 receptor beta) (IL-12
           receptor beta component) (IL-12RB1) (CD212 antigen)
          Length = 662

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 133 PSPTPCPAAGLVWPGGDSLCRHQNP 207
           P PTPC ++ + +PGG    +  NP
Sbjct: 580 PLPTPCASSAIEFPGGKETWQWINP 604

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>RAD5_CANGA (Q6FY76) DNA repair protein RAD5 (EC 3.6.1.-)|
          Length = 1151

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 270 QTLPGEYFCPVCRTL-IYPNEALQAQCTHLYCKPCL 374
           Q +P E  C +C    I  + A+  +C H++CK CL
Sbjct: 891 QLIPVE--CSICTAEPIESSSAVVTECEHVFCKECL 924

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>ARI2_MOUSE (Q9Z1K6) Protein ariadne-2 homolog (ARI-2) (Triad1 protein)|
           (UbcM4-interacting protein 48)
          Length = 492

 Score = 27.3 bits (59), Expect = 8.8
 Identities = 9/36 (25%), Positives = 15/36 (41%)
 Frame = +3

Query: 264 NIQTLPGEYFCPVCRTLIYPNEALQAQCTHLYCKPC 371
           ++ T    + C VC   +     L   C H +C+ C
Sbjct: 128 HVPTAHPPHHCAVCMQFVRKENLLSLACQHQFCRSC 163


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,465,931
Number of Sequences: 219361
Number of extensions: 1158088
Number of successful extensions: 3656
Number of sequences better than 10.0: 97
Number of HSP's better than 10.0 without gapping: 3531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3651
length of database: 80,573,946
effective HSP length: 112
effective length of database: 56,005,514
effective search space used: 1344132336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result