>NOMO2_HUMAN (Q5JPE7) Nodal modulator 2 precursor (pM5 protein 2)|
          Length = 1267

 Score = 86.3 bits (212), Expect = 3e-17
 Identities = 45/106 (42%), Positives = 64/106 (60%), Gaps = 3/106 (2%)
 Frame = +2

Query: 113 DEIDGCGGFVEASSGLAKSRRASESKFDYSDITVELCTVDGLVKESTQCAPN-GYYFIPV 289
           D + GCGGFV+           S+ + +YS I ++L T  G +K  T CAPN GY+ IP+
Sbjct: 34  DIVVGCGGFVK-----------SDVEINYSLIEIKLYTKHGTLKYQTDCAPNNGYFMIPL 82

Query: 290 YDKGSFVVRVKGPKGWSWKPETVPAVID--QNGCNGNADINFQFTG 421
           YDKG F+++++ P GWS++P TV   +D   + C    DINF FTG
Sbjct: 83  YDKGDFILKIEPPLGWSFEPTTVELHVDGVSDICTKGGDINFVFTG 128

>NOMO3_HUMAN (P69849) Nodal modulator 3 precursor (pM5 protein 3)|
          Length = 1222

 Score = 86.3 bits (212), Expect = 3e-17
 Identities = 45/106 (42%), Positives = 64/106 (60%), Gaps = 3/106 (2%)
 Frame = +2

Query: 113 DEIDGCGGFVEASSGLAKSRRASESKFDYSDITVELCTVDGLVKESTQCAPN-GYYFIPV 289
           D + GCGGFV+           S+ + +YS I ++L T  G +K  T CAPN GY+ IP+
Sbjct: 34  DIVVGCGGFVK-----------SDVEINYSLIEIKLYTKHGTLKYQTDCAPNNGYFMIPL 82

Query: 290 YDKGSFVVRVKGPKGWSWKPETVPAVID--QNGCNGNADINFQFTG 421
           YDKG F+++++ P GWS++P TV   +D   + C    DINF FTG
Sbjct: 83  YDKGDFILKIEPPLGWSFEPTTVELHVDGVSDICTKGGDINFVFTG 128

>NOMO1_HUMAN (Q15155) Nodal modulator 1 precursor (pM5)|
          Length = 1222

 Score = 86.3 bits (212), Expect = 3e-17
 Identities = 45/106 (42%), Positives = 64/106 (60%), Gaps = 3/106 (2%)
 Frame = +2

Query: 113 DEIDGCGGFVEASSGLAKSRRASESKFDYSDITVELCTVDGLVKESTQCAPN-GYYFIPV 289
           D + GCGGFV+           S+ + +YS I ++L T  G +K  T CAPN GY+ IP+
Sbjct: 34  DIVVGCGGFVK-----------SDVEINYSLIEIKLYTKHGTLKYQTDCAPNNGYFMIPL 82

Query: 290 YDKGSFVVRVKGPKGWSWKPETVPAVID--QNGCNGNADINFQFTG 421
           YDKG F+++++ P GWS++P TV   +D   + C    DINF FTG
Sbjct: 83  YDKGDFILKIEPPLGWSFEPTTVELHVDGVSDICTKGGDINFVFTG 128

>TNR17_MOUSE (O88472) Tumor necrosis factor receptor superfamily member 17|
           (B-cell maturation protein)
          Length = 185

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 3/88 (3%)
 Frame = +2

Query: 116 EIDGCGGFVEASSGLAKSRRASESKFDYS-DITVELCTVDGLVKESTQCAPNGYYFIPVY 292
           ++DG     +A + L + R   +  F  S + TVE CT +  VK   +   + ++ +P  
Sbjct: 89  QLDGSAQLDKADTELTRIRAGDDRIFPRSLEYTVEECTCEDCVKSKPKGDSDHFFPLPAM 148

Query: 293 DKGS--FVVRVKGPKGWSWKPETVPAVI 370
           ++G+   V    G  G S  P  + +V+
Sbjct: 149 EEGATILVTTKTGDYGKSSVPTALQSVM 176

>RL7_DICDI (P11874) 60S ribosomal protein L7|
          Length = 245

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = +2

Query: 170 RRASESKFDYSDITVELCTVDGLVKESTQCAPNGYYFIPVYDKGSFVVRVKGPKGWSWKP 349
           +RA +   +Y     E   ++ + K S      G +++P   K +FV+R++G  G S KP
Sbjct: 49  KRAEKYVSEYHKTEREAIRLNRIAKNS------GTFYVPPAAKVAFVIRIRGINGVSPKP 102

Query: 350 ETV 358
             V
Sbjct: 103 RKV 105

>RPOC_PHOLL (Q7N9A3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1406

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 27/83 (32%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
 Frame = +2

Query: 161  AKSRRASESKFDYSDITVELCTVD--GLVKESTQCAPNGYYFIPVYDKGSFVVRVKGPKG 334
            AKS   S  K   +    ELC +D  G  KES +  P G     V  KG       G   
Sbjct: 963  AKSVTNSAGKLVITSRNTELCLIDEFGRTKESYK-VPYG----AVLGKGDGETVNGGETV 1017

Query: 335  WSWKPETVPAVIDQNGCNGNADI 403
             +W P T+P V + +G    AD+
Sbjct: 1018 ANWDPHTMPVVSEVSGIIRFADM 1040


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,961,642
Number of Sequences: 219361
Number of extensions: 803425
Number of successful extensions: 1924
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1915
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)