>RPM1_ARATH (Q39214) Disease resistance protein RPM1 (Resistance to Pseudomonas|
           syringae protein 3)
          Length = 926

 Score = 36.6 bits (83), Expect = 0.031
 Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 10/75 (13%)
 Frame = +3

Query: 189 LASAWVDQIRDVGFELEDVADEYAFLSGGGFVRACA------NFGAWL----ALARRLGK 338
           L   +V   RD+ +++ED+ DE+ +   G   R+CA      +F  ++    ++A++LG 
Sbjct: 63  LFQTFVANTRDLAYQIEDILDEFGYHIHG--YRSCAKIWRAFHFPRYMWARHSIAQKLGM 120

Query: 339 ARVRLRDLSDAKERY 383
             V ++ +SD+ +RY
Sbjct: 121 VNVMIQSISDSMKRY 135

>PO5F1_BOVIN (O97552) POU domain, class 5, transcription factor 1|
           (Octamer-binding transcription factor 3) (Oct-3) (Oct-4)
          Length = 360

 Score = 33.5 bits (75), Expect(2) = 0.043
 Identities = 18/38 (47%), Positives = 19/38 (50%)
 Frame = -1

Query: 441 GPVPPSGAELKRWPRPAGCRTAPWHPTGHGASPAPCLA 328
           GPVPP G E    P+P G   A       GASP PC A
Sbjct: 83  GPVPPGGLET---PQPEGEAGAGVESNSEGASPDPCAA 117



 Score = 21.6 bits (44), Expect(2) = 0.043
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 340 ALPSRLARASHAPKLAQARTKPPPE 266
           A P   A  + APKL + + +P PE
Sbjct: 110 ASPDPCAAPAGAPKLDKEKLEPNPE 134

>PME17_CHICK (Q98917) Melanocyte protein Pmel 17 precursor (115 kDa melanosomal|
           matrix protein)
          Length = 763

 Score = 32.7 bits (73), Expect = 0.45
 Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = -1

Query: 450 PTTGPVPPSG--AELKRWPRPAGCRTAPWHPTGHGASPAP 337
           PTTGPVP  G  A     P  +G  TAP + TG G + AP
Sbjct: 317 PTTGPVPSLGPTATQPVGPTGSGTATAPSNLTGSGTAAAP 356

>SP96_DICDI (P14328) Spore coat protein SP96|
          Length = 600

 Score = 32.0 bits (71), Expect = 0.76
 Identities = 26/144 (18%), Positives = 40/144 (27%)
 Frame = -3

Query: 433 AAVGSGTEAVASAGRMPYRSLASDRSRSLTRALPSRLARASHAPKLAQARTKPPPERKAY 254
           +AV S     ++A   P  S AS    S   +     + AS +P  + A +   P   A 
Sbjct: 444 SAVSSSASGSSAASSSPSSSAASSSPSSSAASSSPSSSAASSSPS-SSASSSSSPSSSAS 502

Query: 253 XXXXXXXXXXXXXXXXTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTATREEKSA 74
                           +                                  TAT    +A
Sbjct: 503 SSSAPSSSASSSSAPSSSASSSSASSSSASSAATTAATTIATTAATTTATTTATTATTTA 562

Query: 73  AALPDSVAATFAESDIAIISAMTS 2
                + AAT A +  A  +A T+
Sbjct: 563 TTTATTTAATIATTTAATTTATTT 586

>CO9A3_CHICK (P32017) Collagen alpha-3(IX) chain precursor|
          Length = 675

 Score = 31.6 bits (70), Expect = 0.99
 Identities = 16/40 (40%), Positives = 17/40 (42%)
 Frame = +2

Query: 320 GQTARQGAGEAP*PVGCQGAVRHPAGRGHRFSSAPDGGTG 439
           G T R G    P P G  G+V HP  RG      P G  G
Sbjct: 547 GMTGRPGPAGPPGPPGATGSVGHPGARGPPGYRGPTGELG 586

>CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Fragments)|
          Length = 1262

 Score = 31.6 bits (70), Expect = 0.99
 Identities = 17/45 (37%), Positives = 19/45 (42%)
 Frame = +2

Query: 320 GQTARQGAGEAP*PVGCQGAVRHPAGRGHRFSSAPDGGTGPVVGR 454
           G+   QG    P P G  G    P G+G    S   GG GP  GR
Sbjct: 368 GEPGPQGQAGPPGPQGPPGRAGSPGGKGEMGPSGIPGGPGPPGGR 412

>R13L3_ARATH (Q9STE7) Putative disease resistance RPP13-like protein 3|
          Length = 847

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 13/87 (14%)
 Frame = +3

Query: 168 SRRGEDALASAWVDQIRDVGFELEDVADEYAFLSGGGFVRACANFGAWLALARRLGKAR- 344
           +R  ED ++  W   + D+ +++EDV D Y        +R        L L  ++GK R 
Sbjct: 50  AREREDEVSKEWTKLVLDIAYDIEDVLDTYFLKLEERSLRR-----GLLRLTNKIGKKRD 104

Query: 345 ------------VRLRDLSDAKERYGI 389
                        R+ D++  +E +GI
Sbjct: 105 AYNIVEDIRTLKRRILDITRKRETFGI 131

>ICP0_HHV2H (P28284) Trans-acting transcriptional protein ICP0 (VMW118 protein)|
          Length = 825

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
 Frame = -3

Query: 451 TNDGPGAAVGSGTEAVAS------AGRMPYRSLASDRSRSLTRALPSRLARASHAPKLAQ 290
           +  G G AV +    VAS       GR   R +  D + +  R  P+R  RA+  P +  
Sbjct: 306 SGSGGGPAVAAVVPRVASLPPAAGGGRAQARRVGEDAAAAEGRTPPARQPRAAQEPPIVI 365

Query: 289 ARTKPPPERK 260
           + + PP  R+
Sbjct: 366 SDSPPPSPRR 375

>ZC11A_CHICK (Q5ZJJ1) Zinc finger CCCH-type domain-containing protein 11A|
          Length = 723

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 345 VRLRDLSDAKERYGIRPAEATASVPLPTAAPGPSLVG 455
           V ++ L + K+   +R  ++  +VP P A PGP+  G
Sbjct: 439 VHIKTLEEIKQEKALRMQQSGENVPAPAAQPGPAPAG 475

>GP124_MOUSE (Q91ZV8) Probable G-protein coupled receptor 124 precursor (Tumor|
            endothelial marker 5)
          Length = 1329

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 10/52 (19%)
 Frame = -2

Query: 191  ERVLAAAGVGEPEERAEE----------LQVPRRGSDARADGHERGEVGGRT 66
            E  +AA G GEPE               L   RR   +RA GH  GE GG++
Sbjct: 1137 EASVAARGDGEPEPTGSRGSLAPRHHNNLHHGRRVHKSRAKGHRAGETGGKS 1188

>CBX2_HUMAN (Q14781) Chromobox protein homolog 2|
          Length = 532

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
 Frame = -3

Query: 451 TNDGPGAAVGSGTEAVASAGRMPYRSLASDRSRSLTRALPSRLAR-----ASHAPKLAQA 287
           TN  PG   GSG    AS   MP  +  S++  S   A P+  ++      S  P   ++
Sbjct: 384 TNPAPGKGTGSGLIG-ASGATMPTDTSKSEKLASRAVAPPTPASKRDCVKGSATPSGQES 442

Query: 286 RTKPPPERKA 257
           RT P   RKA
Sbjct: 443 RTAPGEARKA 452

>CO1A2_MOUSE (Q01149) Collagen alpha-2(I) chain precursor|
          Length = 1372

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +2

Query: 317 SGQTARQGAGEAP*PVGCQGAVRHPAGRGHRFSSAPDGGTGP 442
           +G T R GA   P  VG  G       RG   ++ P G  GP
Sbjct: 672 TGNTGRDGARGIPGAVGAPGPAGASGDRGEAGAAGPSGPAGP 713

>COTE1_HUMAN (P81408) COTE1 protein|
          Length = 669

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 432 PPSGAELKRWPRPAGCRTAPWHPTGHGASPAPCL 331
           PP+ A  +R+   +G  T P H   H ASP P L
Sbjct: 455 PPTRAPTRRFSDSSGSLTPPGHRPPHPASPPPLL 488

>CRCB2_MYCTU (P63864) Protein crcB homolog 2|
          Length = 126

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 258 AFLSGGGFVRACANFGAWLALARRLGKARVRLRDLSD 368
           A L+G GFV A   F  W+   +RLG+ R  +  L++
Sbjct: 69  ALLAGTGFVGAYTTFSTWMLETQRLGEDRQMVSALAN 105

>CRCB2_MYCBO (P63865) Protein crcB homolog 2|
          Length = 126

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 258 AFLSGGGFVRACANFGAWLALARRLGKARVRLRDLSD 368
           A L+G GFV A   F  W+   +RLG+ R  +  L++
Sbjct: 69  ALLAGTGFVGAYTTFSTWMLETQRLGEDRQMVSALAN 105

>CO1A2_RANCA (O42350) Collagen alpha-2(I) chain precursor|
          Length = 1355

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 16/41 (39%), Positives = 16/41 (39%)
 Frame = +2

Query: 320  GQTARQGAGEAP*PVGCQGAVRHPAGRGHRFSSAPDGGTGP 442
            G T   G   AP P G  G       RG    S P G TGP
Sbjct: 943  GNTGPSGLAGAPGPAGSAGPAGKSGNRGEGGPSGPAGITGP 983

>PHS2_DICDI (P34114) Glycogen phosphorylase 2 (EC 2.4.1.1) (GP2)|
          Length = 992

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +3

Query: 189 LASAWVDQIRDVGFELEDVADEY--AFLSGGGFVRACANF 302
           L   + D + D+GF+LED+ DE   A L  GG  R  A F
Sbjct: 191 LVGKYSDALMDLGFKLEDLYDEERDAGLGNGGLGRLAACF 230

>GNDS_HUMAN (Q12967) Ral guanine nucleotide dissociation stimulator (RalGEF)|
           (RalGDS)
          Length = 914

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -1

Query: 450 PTTGPVPPSGAELKRWPRPA-GCRTAPWHPTGHGASPAPCLAVWP 319
           P   P P  G+EL+  P PA   + AP    G  ++PAP L + P
Sbjct: 293 PEPAPTPAPGSELEVAPAPAPELQQAPEPAVGLESAPAPALELEP 337

>NHSR_STRAS (P52392) Putative nosiheptide resistance regulatory protein|
           (ORF699)
          Length = 233

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 16/76 (21%)
 Frame = -3

Query: 445 DGPGAAVGSGTEAVASAGRM--PYRSLASDRSRSLTRALPSRLAR--------------A 314
           D   AA GS  ++V  A  +  PY   A +R+         RLA               A
Sbjct: 5   DSVRAATGSAKDSVLHAAEVVAPYADTAKERAAHYAHEARVRLAPKVTLAAEQARVQYGA 64

Query: 313 SHAPKLAQARTKPPPE 266
             AP+L QART  PP+
Sbjct: 65  HLAPRLEQARTHVPPK 80

>BSN_RAT (O88778) Bassoon protein|
          Length = 3937

 Score = 29.3 bits (64), Expect = 4.9
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -1

Query: 450  PTTGPVP--PSGAELKRWPRPAGCRTAP-WHPTGHGASPAP 337
            P+T P P  P G     +P   G  + P +HPTGH A+P P
Sbjct: 3079 PSTYPAPTYPPGTS---YPAEPGLPSQPAFHPTGHYAAPTP 3116

>OST6_HUMAN (Q96QI5) Heparan sulfate glucosamine 3-O-sulfotransferase 6 (EC|
           2.8.2.23) (Heparan sulfate D-glucosaminyl
           3-O-sulfotransferase 6) (Heparan sulfate
           3-O-sulfotransferase 6) (h3-OST-6)
          Length = 342

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 19/56 (33%), Positives = 24/56 (42%)
 Frame = -3

Query: 442 GPGAAVGSGTEAVASAGRMPYRSLASDRSRSLTRALPSRLARASHAPKLAQARTKP 275
           G G   G+G  A   A R P   +A         ALP R   A+ AP  A A ++P
Sbjct: 12  GGGQGAGAGQGAALRASRAPMLLVALVLGAYCLCALPGRCPPAARAPAPAPAPSEP 67

>R13L2_ARATH (Q9STE5) Putative disease resistance RPP13-like protein 2|
          Length = 847

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = +3

Query: 180 EDALASAWVDQIRDVGFELEDVADEYAFLSGGGFVRACANFGAWLALARRLGK-ARVRLR 356
           ED ++  W   + D+ +++EDV D Y                 +L L +RL +   +RL 
Sbjct: 54  EDEVSKEWTKLVLDIAYDVEDVLDTY-----------------FLKLEKRLHRLGLMRLT 96

Query: 357 D-LSDAKERYGI 389
           + +SD K+ Y I
Sbjct: 97  NIISDKKDAYNI 108

>YLPM1_HUMAN (P49750) YLP motif-containing protein 1 (Nuclear protein ZAP3)|
           (ZAP113)
          Length = 1951

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 19/63 (30%), Positives = 27/63 (42%)
 Frame = -3

Query: 442 GPGAAVGSGTEAVASAGRMPYRSLASDRSRSLTRALPSRLARASHAPKLAQARTKPPPER 263
           GP   V S  +A  S   +PY S +SD+    + A PS+   A     +      P P R
Sbjct: 498 GPSEQVNS--KAPLSKSALPYSSFSSDQGLGESSAAPSQPITAVKDMPVRSGGLLPDPPR 555

Query: 262 KAY 254
            +Y
Sbjct: 556 SSY 558

>RIMB1_RAT (Q9JIR0) Peripheral-type benzodiazepine receptor-associated protein 1|
            (PRAX-1) (RIM-binding protein 1) (RIM-BP1)
          Length = 1847

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 16/33 (48%), Positives = 18/33 (54%)
 Frame = -2

Query: 164  GEPEERAEELQVPRRGSDARADGHERGEVGGRT 66
            GE E    E Q+ +   D  ADG  RGE GGRT
Sbjct: 1640 GEEELPFREGQILKVFGDKDADGFYRGESGGRT 1672

>LPXK_BURPS (Q63WL3) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A|
           4'-kinase)
          Length = 342

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = -2

Query: 194 GERVLAAAGVGEPE 153
           GERVLAAAG+G PE
Sbjct: 246 GERVLAAAGIGAPE 259

>LPXK_BURP1 (Q3JVA8) Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (Lipid A|
           4'-kinase)
          Length = 342

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = -2

Query: 194 GERVLAAAGVGEPE 153
           GERVLAAAG+G PE
Sbjct: 246 GERVLAAAGIGAPE 259

>LCMT2_ASHGO (Q75AW4) Leucine carboxyl methyltransferase 2 (EC 2.1.1.-)|
          Length = 699

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 17/42 (40%), Positives = 23/42 (54%)
 Frame = +3

Query: 222 VGFELEDVADEYAFLSGGGFVRACANFGAWLALARRLGKARV 347
           VGFEL+ ++D    + GGG V  C  FGA      RLG+  +
Sbjct: 652 VGFELQIMSDGTVLIFGGGAV--CYGFGAAWNGILRLGRETI 691

>MMP10_RAT (P07152) Stromelysin-2 precursor (EC 3.4.24.22) (Matrix|
           metalloproteinase-10) (MMP-10) (Transin-2) (SL-2)
           (Transformation-associated protein 34A)
          Length = 476

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
 Frame = +3

Query: 336 KARVRLR--DLSDAKERYGIRPAEATASVPLPTAAPGP 443
           +A +RL   D+   +  YG RP+     VP+P+ +P P
Sbjct: 246 QANIRLSQDDIEGIQSLYGARPSSDATVVPVPSVSPKP 283

>CRCB2_MYCPA (P61393) Protein crcB homolog 2|
          Length = 122

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 252 EYAFLSGGGFVRACANFGAWLALARRLGKAR 344
           E A L+G  FV A   F  W+   +RLG+ R
Sbjct: 62  EAALLAGTAFVGAYTTFSTWMLETQRLGEER 92

>CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor|
          Length = 1372

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 14/41 (34%), Positives = 17/41 (41%)
 Frame = +2

Query: 320 GQTARQGAGEAP*PVGCQGAVRHPAGRGHRFSSAPDGGTGP 442
           G   R GA  AP  +G  G       RG   ++ P G  GP
Sbjct: 673 GNPGRDGARGAPGAIGAPGPAGASGDRGEAGAAGPSGPAGP 713

>ZC3H6_MOUSE (Q8BYK8) Zinc finger CCCH-type domain-containing protein 6|
          Length = 1177

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = +2

Query: 359 PVGCQGAVRHPAGRGHRFSSAPDG 430
           P GC+  VRHP   GH     P G
Sbjct: 484 PQGCESPVRHPGSPGHHPCVGPPG 507

>LAD1_HUMAN (O00515) Ladinin 1 (Lad-1) (120 kDa linear IgA bullous dermatosis|
           antigen) (97 kDa linear IgA bullous dermatosis antigen)
           (Linear IgA disease antigen homolog) (LadA)
          Length = 517

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = -3

Query: 439 PGAAVGSGTEAVASAGRMPYRSLASDRSRSLTRALPSRLARASHAPKLAQARTKP 275
           PG A+GSG   V+    +  ++LAS++S +         A A  APK A A  +P
Sbjct: 245 PGMALGSGRRLVSEKASIFEKALASEKSPT---------ADAKPAPKRATASEQP 290

>SNT1_YEAST (P25357) Probable DNA-binding protein SNT1|
          Length = 1226

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = +3

Query: 402 ATASVPLPTAAPG 440
           +TASVPLPTAAPG
Sbjct: 61  STASVPLPTAAPG 73

>PMP3_MOUSE (P05143) Proline-rich protein MP-3 (Fragment)|
          Length = 296

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 20/46 (43%), Positives = 23/46 (50%)
 Frame = -1

Query: 453 RPTTGPVPPSGAELKRWPRPAGCRTAPWHPTGHGASPAPCLAVWPE 316
           RP  GP PP+G +    PRP    T   HPTG G    P LA  P+
Sbjct: 249 RPPQGPPPPTGPQ----PRP----TQGPHPTG-GPQQTPPLAGNPQ 285

>BSN_MOUSE (O88737) Bassoon protein|
          Length = 3941

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = -1

Query: 450  PTTGPVP--PSGAELKRWPRPAGCRTAP-WHPTGHGASPAP 337
            P+T P P  P G     +P   G  + P +HPTGH A+P P
Sbjct: 3094 PSTYPAPTYPPGTG---YPAEPGLPSQPAFHPTGHYAAPTP 3131

>NET2_HUMAN (O00634) Netrin-2-like protein precursor|
          Length = 580

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -2

Query: 221 VPDLVHPGGGERVLAAAGVGEPEERAEELQVPRR 120
           VP LV+   G  VLA++  G P  RA +   PRR
Sbjct: 41  VPGLVNAALGREVLASSTCGRPATRACDASDPRR 74


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,375,751
Number of Sequences: 219361
Number of extensions: 908494
Number of successful extensions: 5288
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 4470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5275
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)