Clone Name | bastl12c03 |
---|---|
Clone Library Name | barley_pub |
>emb|AJ507100.1|HVU507100 Hordeum vulgare partial mRNA for NBS-LRR disease resistance protein homologue (rga S-120 gene) Length = 3245 Score = 787 bits (397), Expect = 0.0 Identities = 409/413 (99%) Strand = Plus / Plus Query: 1 gtgaggtcatggcggagatgatcgcgatatcgctctcggcgaaggtcgccgcaacactgt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 42 gtgaggtcatggcggagatgatcgcgatatcgctctcggcgaaggtcgccgcaacactgt 101 Query: 61 caggcagtgcggccgccgacttctcctctctcgtggccgtccgctcgggcatcgctgccg 120 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 102 caggcagtgcggccgccgacttctcctctctcgtggccgtccgctcgggcatcgccgccg 161 Query: 121 cggcgcgggacctggagctcctccgcgcgttcctccggttcgccgactcccgccgcggcg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 162 cggcgcgggacctggagctcctccgcgcgttcctccggttcgccgactcccgccgcggcg 221 Query: 181 aggacgcgctcgcctccgcctgggtggaccagatccgggacgtcggattcgagctggagg 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 222 aggacgcgctcgcctccgcctgggtggaccagatccgggacgtcggattcgagctggagg 281 Query: 241 acgtcgcggacgagtacgccttcctctccggcggcggcttcgtccgcgcctgcgctaact 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 282 acgtcgcggacgagtacgccttcctctccggcggcggcttcgtccgcgcctgcgctaact 341 Query: 301 tcggcgcgtggctcgctctggccagacggctaggcaaggcgcgggtgaggctccgtgacc 360 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 342 tcggcgcgtggctcgctctggccagacggctaggcaaggcgcgggtgaggctccgcgacc 401 Query: 361 tgtcggatgccaaggagcggtacggcatccggccggccgaggccaccgcttca 413 |||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct: 402 tgtcggatgccaaggagcggtacggcatccggccggccgaggcctcggcttca 454
>emb|AL731613.5|OSJN00257 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065H10, complete sequence Length = 133967 Score = 168 bits (85), Expect = 1e-38 Identities = 253/309 (81%) Strand = Plus / Minus Query: 8 catggcggagatgatcgcgatatcgctctcggcgaaggtcgccgcaacactgtcaggcag 67 |||||||||||||||||| | | |||||||||||||||||||| | ||||| || Sbjct: 60415 catggcggagatgatcgccgtgacactctcggcgaaggtcgccgccgcgctgtccggacc 60356 Query: 68 tgcggccgccgacttctcctctctcgtggccgtccgctcgggcatcgctgccgcggcgcg 127 ||||||| | |||||||||||| | || ||||||||||||| || |||||||| Sbjct: 60355 cgcggccgtcaggctctcctctctcgccggggttcgctcgggcatcgaagcggcggcgcg 60296 Query: 128 ggacctggagctcctccgcgcgttcctccggttcgccgactcccgccgcggcgaggacgc 187 |||||||||||||||||||| |||||||| |||| |||||||| || |||| ||| | Sbjct: 60295 agacctggagctcctccgcgccttcctccgcttcgtcgactccctccacggcagcgaccc 60236 Query: 188 gctcgcctccgcctgggtggaccagatccgggacgtcggattcgagctggaggacgtcgc 247 ||||||| ||||||||| |||||| | || ||||||| ||||| |||||||||| ||| Sbjct: 60235 gctcgccgacgcctgggttgaccaggtgcgcgacgtcgccttcgacctggaggacgccgc 60176 Query: 248 ggacgagtacgccttcctctccggcggcggcttcgtccgcgcctgcgctaacttcggcgc 307 ||||||||||||||||||||||||| ||||||| ||||| |||||||||| ||||| Sbjct: 60175 ggacgagtacgccttcctctccggccacggcttcttccgccatggcgctaacttgggcgc 60116 Query: 308 gtggctcgc 316 ||| |||| Sbjct: 60115 ctggttcgc 60107
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 168 bits (85), Expect = 1e-38 Identities = 253/309 (81%) Strand = Plus / Minus Query: 8 catggcggagatgatcgcgatatcgctctcggcgaaggtcgccgcaacactgtcaggcag 67 |||||||||||||||||| | | |||||||||||||||||||| | ||||| || Sbjct: 27409261 catggcggagatgatcgccgtgacactctcggcgaaggtcgccgccgcgctgtccggacc 27409202 Query: 68 tgcggccgccgacttctcctctctcgtggccgtccgctcgggcatcgctgccgcggcgcg 127 ||||||| | |||||||||||| | || ||||||||||||| || |||||||| Sbjct: 27409201 cgcggccgtcaggctctcctctctcgccggggttcgctcgggcatcgaagcggcggcgcg 27409142 Query: 128 ggacctggagctcctccgcgcgttcctccggttcgccgactcccgccgcggcgaggacgc 187 |||||||||||||||||||| |||||||| |||| |||||||| || |||| ||| | Sbjct: 27409141 agacctggagctcctccgcgccttcctccgcttcgtcgactccctccacggcagcgaccc 27409082 Query: 188 gctcgcctccgcctgggtggaccagatccgggacgtcggattcgagctggaggacgtcgc 247 ||||||| ||||||||| |||||| | || ||||||| ||||| |||||||||| ||| Sbjct: 27409081 gctcgccgacgcctgggttgaccaggtgcgcgacgtcgccttcgacctggaggacgccgc 27409022 Query: 248 ggacgagtacgccttcctctccggcggcggcttcgtccgcgcctgcgctaacttcggcgc 307 ||||||||||||||||||||||||| ||||||| ||||| |||||||||| ||||| Sbjct: 27409021 ggacgagtacgccttcctctccggccacggcttcttccgccatggcgctaacttgggcgc 27408962 Query: 308 gtggctcgc 316 ||| |||| Sbjct: 27408961 ctggttcgc 27408953
>dbj|AK065659.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013042N16, full insert sequence Length = 3204 Score = 168 bits (85), Expect = 1e-38 Identities = 253/309 (81%) Strand = Plus / Plus Query: 8 catggcggagatgatcgcgatatcgctctcggcgaaggtcgccgcaacactgtcaggcag 67 |||||||||||||||||| | | |||||||||||||||||||| | ||||| || Sbjct: 117 catggcggagatgatcgccgtgacactctcggcgaaggtcgccgccgcgctgtccggacc 176 Query: 68 tgcggccgccgacttctcctctctcgtggccgtccgctcgggcatcgctgccgcggcgcg 127 ||||||| | |||||||||||| | || ||||||||||||| || |||||||| Sbjct: 177 cgcggccgtcaggctctcctctctcgccggggttcgctcgggcatcgaagcggcggcgcg 236 Query: 128 ggacctggagctcctccgcgcgttcctccggttcgccgactcccgccgcggcgaggacgc 187 |||||||||||||||||||| |||||||| |||| |||||||| || |||| ||| | Sbjct: 237 agacctggagctcctccgcgccttcctccgcttcgtcgactccctccacggcagcgaccc 296 Query: 188 gctcgcctccgcctgggtggaccagatccgggacgtcggattcgagctggaggacgtcgc 247 ||||||| ||||||||| |||||| | || ||||||| ||||| |||||||||| ||| Sbjct: 297 gctcgccgacgcctgggttgaccaggtgcgcgacgtcgccttcgacctggaggacgccgc 356 Query: 248 ggacgagtacgccttcctctccggcggcggcttcgtccgcgcctgcgctaacttcggcgc 307 ||||||||||||||||||||||||| ||||||| ||||| |||||||||| ||||| Sbjct: 357 ggacgagtacgccttcctctccggccacggcttcttccgccatggcgctaacttgggcgc 416 Query: 308 gtggctcgc 316 ||| |||| Sbjct: 417 ctggttcgc 425
>gb|AC167227.1| Oryza sativa (japonica cultivar-group) chromosome unknown clone OSJNBb0026K11, complete sequence Length = 129643 Score = 99.6 bits (50), Expect = 8e-18 Identities = 130/156 (83%), Gaps = 3/156 (1%) Strand = Plus / Minus Query: 120 gcggcgcgggacctggagctcctccgcgcgttcctccggttcgccgactcccgcc---gc 176 ||||||| ||||| |||||||||||||| |||||||| |||| |||| |||| | || Sbjct: 14828 gcggcgcaagacctcgagctcctccgcgccttcctccgcttcgtcgacacccggcacggc 14769 Query: 177 ggcgaggacgcgctcgcctccgcctgggtggaccagatccgggacgtcggattcgagctg 236 |||| |||||||||||| ||| ||||| |||||| | || ||||| | ||||| || Sbjct: 14768 ggcggcgacgcgctcgccgacgcttgggttgaccaggtacgcgacgttgccttcgaactc 14709 Query: 237 gaggacgtcgcggacgagtacgccttcctctccggc 272 ||||||||||||||||||||| |||||||||||||| Sbjct: 14708 gaggacgtcgcggacgagtacaccttcctctccggc 14673 Score = 44.1 bits (22), Expect = 0.39 Identities = 46/54 (85%) Strand = Plus / Minus Query: 338 ggcgcgggtgaggctccgtgacctgtcggatgccaaggagcggtacggcatccg 391 |||||||| ||||||||| || || |||| ||||||||| |||||||||||| Sbjct: 14604 ggcgcgggagaggctccgcgagctctcggccaccaaggagcagtacggcatccg 14551 Score = 40.1 bits (20), Expect = 6.1 Identities = 38/44 (86%) Strand = Plus / Minus Query: 8 catggcggagatgatcgcgatatcgctctcggcgaaggtcgccg 51 |||||||||||||||||| | || |||||||| ||||| |||| Sbjct: 14940 catggcggagatgatcgccgtctccctctcggcaaaggttgccg 14897
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 46.1 bits (23), Expect = 0.100 Identities = 23/23 (100%) Strand = Plus / Plus Query: 105 tcgggcatcgctgccgcggcgcg 127 ||||||||||||||||||||||| Sbjct: 1782479 tcgggcatcgctgccgcggcgcg 1782501
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 46.1 bits (23), Expect = 0.100 Identities = 23/23 (100%) Strand = Plus / Minus Query: 155 ccggttcgccgactcccgccgcg 177 ||||||||||||||||||||||| Sbjct: 972814 ccggttcgccgactcccgccgcg 972792
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 46.1 bits (23), Expect = 0.100 Identities = 23/23 (100%) Strand = Plus / Plus Query: 105 tcgggcatcgctgccgcggcgcg 127 ||||||||||||||||||||||| Sbjct: 1803600 tcgggcatcgctgccgcggcgcg 1803622
>ref|XM_421117.1| PREDICTED: Gallus gallus similar to hypothetical protein FLJ32675 (LOC423193), mRNA Length = 1202 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 232 agctggaggacgtcgcggacgagtac 257 |||||||||||||| ||||||||||| Sbjct: 77 agctggaggacgtcacggacgagtac 102
>emb|AL445427.23| Human DNA sequence from clone RP5-1091A7 on chromosome 1p22.2-31.1 Contains the 5' end of the COL24A1 gene for collagen type XXIV alpha 1 and two CpG islands, complete sequence Length = 111132 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 185 cgcgctcgcctccgcctgggt 205 ||||||||||||||||||||| Sbjct: 9702 cgcgctcgcctccgcctgggt 9722
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 268 ccggcggcggcttcgtccgcg 288 ||||||||||||||||||||| Sbjct: 2485394 ccggcggcggcttcgtccgcg 2485374
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 268 ccggcggcggcttcgtccgcg 288 ||||||||||||||||||||| Sbjct: 2811872 ccggcggcggcttcgtccgcg 2811852
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 268 ccggcggcggcttcgtccgcg 288 ||||||||||||||||||||| Sbjct: 4495755 ccggcggcggcttcgtccgcg 4495735
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 392 gccggccgaggccaccgcttc 412 ||||||||||||||||||||| Sbjct: 3598985 gccggccgaggccaccgcttc 3599005
>ref|NM_197421.1| Oryza sativa (japonica cultivar-group) putative membrane protein (OSJNBa0096G08.9), mRNA Length = 1620 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 cgcgctcgcctccgcctggg 204 |||||||||||||||||||| Sbjct: 702 cgcgctcgcctccgcctggg 721
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 cggcggcggcttcgtccgcg 288 |||||||||||||||||||| Sbjct: 314133 cggcggcggcttcgtccgcg 314152
>gb|BT018972.1| Zea mays clone Contig383.F mRNA sequence Length = 1275 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 ccttcctctccggcggcggc 278 |||||||||||||||||||| Sbjct: 14 ccttcctctccggcggcggc 33
>gb|AC078894.11| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNBa0096G08 map E1363S, complete sequence Length = 140681 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 cgcgctcgcctccgcctggg 204 |||||||||||||||||||| Sbjct: 49937 cgcgctcgcctccgcctggg 49956
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 158 gttcgccgactcccgccgcggcga 181 |||||||||| ||||||||||||| Sbjct: 476890 gttcgccgacacccgccgcggcga 476867
>gb|AC137871.18| Mus musculus chromosome 15, clone RP23-41B9, complete sequence Length = 223529 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 187 cgctcgcctccgcctgggtg 206 |||||||||||||||||||| Sbjct: 105570 cgctcgcctccgcctgggtg 105589
>gb|AY008288.1| Burkholderia cepacia putative transcriptional regulator CeoR (ceoR) and lipase-like protein LlpE (llpE) genes, complete cds Length = 2040 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 cggcggcggcttcgtccgcg 288 |||||||||||||||||||| Sbjct: 1353 cggcggcggcttcgtccgcg 1372
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 272 cggcggcttcgtccgcgcctgcgc 295 ||||||||||||| |||||||||| Sbjct: 1931733 cggcggcttcgtcagcgcctgcgc 1931710
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 gggcatcgctgccgcggcgc 126 |||||||||||||||||||| Sbjct: 3404091 gggcatcgctgccgcggcgc 3404072
>emb|BX842573.1| Mycobacterium tuberculosis H37Rv complete genome; segment 2/13 Length = 342416 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 158 gttcgccgactcccgccgcggcga 181 |||||||||| ||||||||||||| Sbjct: 134892 gttcgccgacacccgccgcggcga 134869
>emb|BX248335.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 2/14 Length = 324050 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 158 gttcgccgactcccgccgcggcga 181 |||||||||| ||||||||||||| Sbjct: 134818 gttcgccgacacccgccgcggcga 134795
>gb|AF416776.1| Methylobacterium extorquens strain AM1 GTPase/ATPase (meaB), putative isopropylmalate dehydratase (leuD), tryptophanyl-tRNA synthetase (trpS), and ArsR-type transcriptional regulator genes, complete cds; and unknown genes Length = 8217 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 179 cgaggacgcgctcgcctccg 198 |||||||||||||||||||| Sbjct: 2419 cgaggacgcgctcgcctccg 2400
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 104 ctcgggcatcgctgccgcggcgcg 127 ||||| |||||||||||||||||| Sbjct: 1849861 ctcggccatcgctgccgcggcgcg 1849838
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 cgcgctcgcctccgcctggg 204 |||||||||||||||||||| Sbjct: 19788899 cgcgctcgcctccgcctggg 19788918
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 261 ttcctctccggcggcggcttcgtc 284 |||||||||||||||||| ||||| Sbjct: 25939793 ttcctctccggcggcggcgtcgtc 25939770
>dbj|AP003017.1| Mesorhizobium loti MAFF303099 plasmid pMLb DNA, complete genome Length = 208315 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 376 agcggtacggcatccggccggccg 399 ||||||||||||||||||| |||| Sbjct: 181760 agcggtacggcatccggccagccg 181783
>dbj|AP003568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0017B12 Length = 157424 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 261 ttcctctccggcggcggcttcgtc 284 |||||||||||||||||| ||||| Sbjct: 94891 ttcctctccggcggcggcgtcgtc 94868
>gb|AY103726.1| Zea mays PCO100951 mRNA sequence Length = 2440 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 259 ccttcctctccggcggcggc 278 |||||||||||||||||||| Sbjct: 1167 ccttcctctccggcggcggc 1186
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 185 cgcgctcgcctccgcctggg 204 |||||||||||||||||||| Sbjct: 19800175 cgcgctcgcctccgcctggg 19800194
>gb|AD000014.1|MSGY423 Mycobacterium tuberculosis sequence from clone y423 Length = 42741 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 158 gttcgccgactcccgccgcggcga 181 |||||||||| ||||||||||||| Sbjct: 1186 gttcgccgacacccgccgcggcga 1163 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,449,761 Number of Sequences: 3902068 Number of extensions: 2449761 Number of successful extensions: 50580 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 48816 Number of HSP's gapped (non-prelim): 1760 length of query: 456 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 434 effective length of database: 17,147,199,772 effective search space: 7441884701048 effective search space used: 7441884701048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)