ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl12c03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AJ507100.1|HVU507100 Hordeum vulgare partial mRNA for NBS-LR... 787 0.0
2emb|AL731613.5|OSJN00257 Oryza sativa genomic DNA, chromosome 4,... 168 1e-38
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 168 1e-38
4dbj|AK065659.1| Oryza sativa (japonica cultivar-group) cDNA clon... 168 1e-38
5gb|AC167227.1| Oryza sativa (japonica cultivar-group) chromosome... 100 8e-18
6dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 46 0.100
7dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.100
8gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 46 0.100
9ref|XM_421117.1| PREDICTED: Gallus gallus similar to hypothetica... 44 0.39
10emb|AL445427.23| Human DNA sequence from clone RP5-1091A7 on chr... 42 1.6
11gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 42 1.6
12gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome 42 1.6
13dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 42 1.6
14dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 42 1.6
15ref|NM_197421.1| Oryza sativa (japonica cultivar-group) putative... 40 6.1
16gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 6.1
17gb|BT018972.1| Zea mays clone Contig383.F mRNA sequence 40 6.1
18gb|AC078894.11| Oryza sativa (japonica cultivar-group) chromosom... 40 6.1
19gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 40 6.1
20gb|AC137871.18| Mus musculus chromosome 15, clone RP23-41B9, com... 40 6.1
21gb|AY008288.1| Burkholderia cepacia putative transcriptional reg... 40 6.1
22emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 6.1
23gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 6.1
24emb|BX842573.1| Mycobacterium tuberculosis H37Rv complete genome... 40 6.1
25emb|BX248335.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 6.1
26gb|AF416776.1| Methylobacterium extorquens strain AM1 GTPase/ATP... 40 6.1
27gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete g... 40 6.1
28dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
29dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
30dbj|AP003017.1| Mesorhizobium loti MAFF303099 plasmid pMLb DNA, ... 40 6.1
31dbj|AP003568.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
32gb|AY103726.1| Zea mays PCO100951 mRNA sequence 40 6.1
33gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.1
34gb|AD000014.1|MSGY423 Mycobacterium tuberculosis sequence from c... 40 6.1

>emb|AJ507100.1|HVU507100 Hordeum vulgare partial mRNA for NBS-LRR disease resistance protein
           homologue (rga S-120 gene)
          Length = 3245

 Score =  787 bits (397), Expect = 0.0
 Identities = 409/413 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgaggtcatggcggagatgatcgcgatatcgctctcggcgaaggtcgccgcaacactgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42  gtgaggtcatggcggagatgatcgcgatatcgctctcggcgaaggtcgccgcaacactgt 101

                                                                       
Query: 61  caggcagtgcggccgccgacttctcctctctcgtggccgtccgctcgggcatcgctgccg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 102 caggcagtgcggccgccgacttctcctctctcgtggccgtccgctcgggcatcgccgccg 161

                                                                       
Query: 121 cggcgcgggacctggagctcctccgcgcgttcctccggttcgccgactcccgccgcggcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 cggcgcgggacctggagctcctccgcgcgttcctccggttcgccgactcccgccgcggcg 221

                                                                       
Query: 181 aggacgcgctcgcctccgcctgggtggaccagatccgggacgtcggattcgagctggagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 aggacgcgctcgcctccgcctgggtggaccagatccgggacgtcggattcgagctggagg 281

                                                                       
Query: 241 acgtcgcggacgagtacgccttcctctccggcggcggcttcgtccgcgcctgcgctaact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 acgtcgcggacgagtacgccttcctctccggcggcggcttcgtccgcgcctgcgctaact 341

                                                                       
Query: 301 tcggcgcgtggctcgctctggccagacggctaggcaaggcgcgggtgaggctccgtgacc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 342 tcggcgcgtggctcgctctggccagacggctaggcaaggcgcgggtgaggctccgcgacc 401

                                                                
Query: 361 tgtcggatgccaaggagcggtacggcatccggccggccgaggccaccgcttca 413
           |||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 402 tgtcggatgccaaggagcggtacggcatccggccggccgaggcctcggcttca 454



to top

>emb|AL731613.5|OSJN00257 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0065H10,
             complete sequence
          Length = 133967

 Score =  168 bits (85), Expect = 1e-38
 Identities = 253/309 (81%)
 Strand = Plus / Minus

                                                                         
Query: 8     catggcggagatgatcgcgatatcgctctcggcgaaggtcgccgcaacactgtcaggcag 67
             ||||||||||||||||||  |  | ||||||||||||||||||||  | ||||| ||   
Sbjct: 60415 catggcggagatgatcgccgtgacactctcggcgaaggtcgccgccgcgctgtccggacc 60356

                                                                         
Query: 68    tgcggccgccgacttctcctctctcgtggccgtccgctcgggcatcgctgccgcggcgcg 127
              ||||||| |    ||||||||||||  |  || |||||||||||||  || ||||||||
Sbjct: 60355 cgcggccgtcaggctctcctctctcgccggggttcgctcgggcatcgaagcggcggcgcg 60296

                                                                         
Query: 128   ggacctggagctcctccgcgcgttcctccggttcgccgactcccgccgcggcgaggacgc 187
              |||||||||||||||||||| |||||||| |||| |||||||| || ||||   ||| |
Sbjct: 60295 agacctggagctcctccgcgccttcctccgcttcgtcgactccctccacggcagcgaccc 60236

                                                                         
Query: 188   gctcgcctccgcctgggtggaccagatccgggacgtcggattcgagctggaggacgtcgc 247
             |||||||  ||||||||| |||||| | || |||||||  ||||| |||||||||| |||
Sbjct: 60235 gctcgccgacgcctgggttgaccaggtgcgcgacgtcgccttcgacctggaggacgccgc 60176

                                                                         
Query: 248   ggacgagtacgccttcctctccggcggcggcttcgtccgcgcctgcgctaacttcggcgc 307
             |||||||||||||||||||||||||  ||||||| |||||    |||||||||| |||||
Sbjct: 60175 ggacgagtacgccttcctctccggccacggcttcttccgccatggcgctaacttgggcgc 60116

                      
Query: 308   gtggctcgc 316
              ||| ||||
Sbjct: 60115 ctggttcgc 60107



to top

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  168 bits (85), Expect = 1e-38
 Identities = 253/309 (81%)
 Strand = Plus / Minus

                                                                            
Query: 8        catggcggagatgatcgcgatatcgctctcggcgaaggtcgccgcaacactgtcaggcag 67
                ||||||||||||||||||  |  | ||||||||||||||||||||  | ||||| ||   
Sbjct: 27409261 catggcggagatgatcgccgtgacactctcggcgaaggtcgccgccgcgctgtccggacc 27409202

                                                                            
Query: 68       tgcggccgccgacttctcctctctcgtggccgtccgctcgggcatcgctgccgcggcgcg 127
                 ||||||| |    ||||||||||||  |  || |||||||||||||  || ||||||||
Sbjct: 27409201 cgcggccgtcaggctctcctctctcgccggggttcgctcgggcatcgaagcggcggcgcg 27409142

                                                                            
Query: 128      ggacctggagctcctccgcgcgttcctccggttcgccgactcccgccgcggcgaggacgc 187
                 |||||||||||||||||||| |||||||| |||| |||||||| || ||||   ||| |
Sbjct: 27409141 agacctggagctcctccgcgccttcctccgcttcgtcgactccctccacggcagcgaccc 27409082

                                                                            
Query: 188      gctcgcctccgcctgggtggaccagatccgggacgtcggattcgagctggaggacgtcgc 247
                |||||||  ||||||||| |||||| | || |||||||  ||||| |||||||||| |||
Sbjct: 27409081 gctcgccgacgcctgggttgaccaggtgcgcgacgtcgccttcgacctggaggacgccgc 27409022

                                                                            
Query: 248      ggacgagtacgccttcctctccggcggcggcttcgtccgcgcctgcgctaacttcggcgc 307
                |||||||||||||||||||||||||  ||||||| |||||    |||||||||| |||||
Sbjct: 27409021 ggacgagtacgccttcctctccggccacggcttcttccgccatggcgctaacttgggcgc 27408962

                         
Query: 308      gtggctcgc 316
                 ||| ||||
Sbjct: 27408961 ctggttcgc 27408953



to top

>dbj|AK065659.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013042N16, full
           insert sequence
          Length = 3204

 Score =  168 bits (85), Expect = 1e-38
 Identities = 253/309 (81%)
 Strand = Plus / Plus

                                                                       
Query: 8   catggcggagatgatcgcgatatcgctctcggcgaaggtcgccgcaacactgtcaggcag 67
           ||||||||||||||||||  |  | ||||||||||||||||||||  | ||||| ||   
Sbjct: 117 catggcggagatgatcgccgtgacactctcggcgaaggtcgccgccgcgctgtccggacc 176

                                                                       
Query: 68  tgcggccgccgacttctcctctctcgtggccgtccgctcgggcatcgctgccgcggcgcg 127
            ||||||| |    ||||||||||||  |  || |||||||||||||  || ||||||||
Sbjct: 177 cgcggccgtcaggctctcctctctcgccggggttcgctcgggcatcgaagcggcggcgcg 236

                                                                       
Query: 128 ggacctggagctcctccgcgcgttcctccggttcgccgactcccgccgcggcgaggacgc 187
            |||||||||||||||||||| |||||||| |||| |||||||| || ||||   ||| |
Sbjct: 237 agacctggagctcctccgcgccttcctccgcttcgtcgactccctccacggcagcgaccc 296

                                                                       
Query: 188 gctcgcctccgcctgggtggaccagatccgggacgtcggattcgagctggaggacgtcgc 247
           |||||||  ||||||||| |||||| | || |||||||  ||||| |||||||||| |||
Sbjct: 297 gctcgccgacgcctgggttgaccaggtgcgcgacgtcgccttcgacctggaggacgccgc 356

                                                                       
Query: 248 ggacgagtacgccttcctctccggcggcggcttcgtccgcgcctgcgctaacttcggcgc 307
           |||||||||||||||||||||||||  ||||||| |||||    |||||||||| |||||
Sbjct: 357 ggacgagtacgccttcctctccggccacggcttcttccgccatggcgctaacttgggcgc 416

                    
Query: 308 gtggctcgc 316
            ||| ||||
Sbjct: 417 ctggttcgc 425



to top

>gb|AC167227.1| Oryza sativa (japonica cultivar-group) chromosome unknown clone
             OSJNBb0026K11, complete sequence
          Length = 129643

 Score = 99.6 bits (50), Expect = 8e-18
 Identities = 130/156 (83%), Gaps = 3/156 (1%)
 Strand = Plus / Minus

                                                                         
Query: 120   gcggcgcgggacctggagctcctccgcgcgttcctccggttcgccgactcccgcc---gc 176
             |||||||  ||||| |||||||||||||| |||||||| |||| |||| |||| |   ||
Sbjct: 14828 gcggcgcaagacctcgagctcctccgcgccttcctccgcttcgtcgacacccggcacggc 14769

                                                                         
Query: 177   ggcgaggacgcgctcgcctccgcctgggtggaccagatccgggacgtcggattcgagctg 236
             ||||  ||||||||||||  ||| ||||| |||||| | || ||||| |  ||||| || 
Sbjct: 14768 ggcggcgacgcgctcgccgacgcttgggttgaccaggtacgcgacgttgccttcgaactc 14709

                                                 
Query: 237   gaggacgtcgcggacgagtacgccttcctctccggc 272
             ||||||||||||||||||||| ||||||||||||||
Sbjct: 14708 gaggacgtcgcggacgagtacaccttcctctccggc 14673



 Score = 44.1 bits (22), Expect = 0.39
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                   
Query: 338   ggcgcgggtgaggctccgtgacctgtcggatgccaaggagcggtacggcatccg 391
             |||||||| ||||||||| || || ||||   ||||||||| ||||||||||||
Sbjct: 14604 ggcgcgggagaggctccgcgagctctcggccaccaaggagcagtacggcatccg 14551



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                         
Query: 8     catggcggagatgatcgcgatatcgctctcggcgaaggtcgccg 51
             ||||||||||||||||||  | || |||||||| ||||| ||||
Sbjct: 14940 catggcggagatgatcgccgtctccctctcggcaaaggttgccg 14897



to top

>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 46.1 bits (23), Expect = 0.100
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 105     tcgggcatcgctgccgcggcgcg 127
               |||||||||||||||||||||||
Sbjct: 1782479 tcgggcatcgctgccgcggcgcg 1782501



to top

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
              complete sequence
          Length = 28386948

 Score = 46.1 bits (23), Expect = 0.100
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 155    ccggttcgccgactcccgccgcg 177
              |||||||||||||||||||||||
Sbjct: 972814 ccggttcgccgactcccgccgcg 972792



to top

>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 46.1 bits (23), Expect = 0.100
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 105     tcgggcatcgctgccgcggcgcg 127
               |||||||||||||||||||||||
Sbjct: 1803600 tcgggcatcgctgccgcggcgcg 1803622



to top

>ref|XM_421117.1| PREDICTED: Gallus gallus similar to hypothetical protein FLJ32675
           (LOC423193), mRNA
          Length = 1202

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 232 agctggaggacgtcgcggacgagtac 257
           |||||||||||||| |||||||||||
Sbjct: 77  agctggaggacgtcacggacgagtac 102



to top

>emb|AL445427.23| Human DNA sequence from clone RP5-1091A7 on chromosome 1p22.2-31.1
            Contains the 5' end of the COL24A1 gene for collagen type
            XXIV alpha 1 and two CpG islands, complete sequence
          Length = 111132

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 185  cgcgctcgcctccgcctgggt 205
            |||||||||||||||||||||
Sbjct: 9702 cgcgctcgcctccgcctgggt 9722



to top

>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 268     ccggcggcggcttcgtccgcg 288
               |||||||||||||||||||||
Sbjct: 2485394 ccggcggcggcttcgtccgcg 2485374



to top

>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome
          Length = 5331656

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 268     ccggcggcggcttcgtccgcg 288
               |||||||||||||||||||||
Sbjct: 2811872 ccggcggcggcttcgtccgcg 2811852



to top

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 268     ccggcggcggcttcgtccgcg 288
               |||||||||||||||||||||
Sbjct: 4495755 ccggcggcggcttcgtccgcg 4495735



to top

>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 392     gccggccgaggccaccgcttc 412
               |||||||||||||||||||||
Sbjct: 3598985 gccggccgaggccaccgcttc 3599005



to top

>ref|NM_197421.1| Oryza sativa (japonica cultivar-group) putative membrane protein
           (OSJNBa0096G08.9), mRNA
          Length = 1620

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 185 cgcgctcgcctccgcctggg 204
           ||||||||||||||||||||
Sbjct: 702 cgcgctcgcctccgcctggg 721



to top

>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 269    cggcggcggcttcgtccgcg 288
              ||||||||||||||||||||
Sbjct: 314133 cggcggcggcttcgtccgcg 314152



to top

>gb|BT018972.1| Zea mays clone Contig383.F mRNA sequence
          Length = 1275

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 259 ccttcctctccggcggcggc 278
           ||||||||||||||||||||
Sbjct: 14  ccttcctctccggcggcggc 33



to top

>gb|AC078894.11| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBa0096G08 map E1363S, complete sequence
          Length = 140681

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 185   cgcgctcgcctccgcctggg 204
             ||||||||||||||||||||
Sbjct: 49937 cgcgctcgcctccgcctggg 49956



to top

>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 158    gttcgccgactcccgccgcggcga 181
              |||||||||| |||||||||||||
Sbjct: 476890 gttcgccgacacccgccgcggcga 476867



to top

>gb|AC137871.18| Mus musculus chromosome 15, clone RP23-41B9, complete sequence
          Length = 223529

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 187    cgctcgcctccgcctgggtg 206
              ||||||||||||||||||||
Sbjct: 105570 cgctcgcctccgcctgggtg 105589



to top

>gb|AY008288.1| Burkholderia cepacia putative transcriptional regulator CeoR (ceoR)
            and lipase-like protein LlpE (llpE) genes, complete cds
          Length = 2040

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 269  cggcggcggcttcgtccgcg 288
            ||||||||||||||||||||
Sbjct: 1353 cggcggcggcttcgtccgcg 1372



to top

>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 272     cggcggcttcgtccgcgcctgcgc 295
               ||||||||||||| ||||||||||
Sbjct: 1931733 cggcggcttcgtcagcgcctgcgc 1931710



to top

>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 107     gggcatcgctgccgcggcgc 126
               ||||||||||||||||||||
Sbjct: 3404091 gggcatcgctgccgcggcgc 3404072



to top

>emb|BX842573.1| Mycobacterium tuberculosis H37Rv complete genome; segment 2/13
          Length = 342416

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 158    gttcgccgactcccgccgcggcga 181
              |||||||||| |||||||||||||
Sbjct: 134892 gttcgccgacacccgccgcggcga 134869



to top

>emb|BX248335.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 2/14
          Length = 324050

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 158    gttcgccgactcccgccgcggcga 181
              |||||||||| |||||||||||||
Sbjct: 134818 gttcgccgacacccgccgcggcga 134795



to top

>gb|AF416776.1| Methylobacterium extorquens strain AM1 GTPase/ATPase (meaB), putative
            isopropylmalate dehydratase (leuD), tryptophanyl-tRNA
            synthetase (trpS), and ArsR-type transcriptional
            regulator genes, complete cds; and unknown genes
          Length = 8217

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 179  cgaggacgcgctcgcctccg 198
            ||||||||||||||||||||
Sbjct: 2419 cgaggacgcgctcgcctccg 2400



to top

>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome
          Length = 2909809

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 104     ctcgggcatcgctgccgcggcgcg 127
               ||||| ||||||||||||||||||
Sbjct: 1849861 ctcggccatcgctgccgcggcgcg 1849838



to top

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 185      cgcgctcgcctccgcctggg 204
                ||||||||||||||||||||
Sbjct: 19788899 cgcgctcgcctccgcctggg 19788918



to top

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 261      ttcctctccggcggcggcttcgtc 284
                |||||||||||||||||| |||||
Sbjct: 25939793 ttcctctccggcggcggcgtcgtc 25939770



to top

>dbj|AP003017.1| Mesorhizobium loti MAFF303099 plasmid pMLb DNA, complete genome
          Length = 208315

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 376    agcggtacggcatccggccggccg 399
              ||||||||||||||||||| ||||
Sbjct: 181760 agcggtacggcatccggccagccg 181783



to top

>dbj|AP003568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0017B12
          Length = 157424

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 261   ttcctctccggcggcggcttcgtc 284
             |||||||||||||||||| |||||
Sbjct: 94891 ttcctctccggcggcggcgtcgtc 94868



to top

>gb|AY103726.1| Zea mays PCO100951 mRNA sequence
          Length = 2440

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 259  ccttcctctccggcggcggc 278
            ||||||||||||||||||||
Sbjct: 1167 ccttcctctccggcggcggc 1186



to top

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 185      cgcgctcgcctccgcctggg 204
                ||||||||||||||||||||
Sbjct: 19800175 cgcgctcgcctccgcctggg 19800194



to top

>gb|AD000014.1|MSGY423 Mycobacterium tuberculosis sequence from clone y423
          Length = 42741

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 158  gttcgccgactcccgccgcggcga 181
            |||||||||| |||||||||||||
Sbjct: 1186 gttcgccgacacccgccgcggcga 1163


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,449,761
Number of Sequences: 3902068
Number of extensions: 2449761
Number of successful extensions: 50580
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 48816
Number of HSP's gapped (non-prelim): 1760
length of query: 456
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 434
effective length of database: 17,147,199,772
effective search space: 7441884701048
effective search space used: 7441884701048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top