ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl12c02 |
|---|---|
| Clone Library Name | barley_pub |
>IF3A_MAIZE (Q9XHR2) Eukaryotic translation initiation factor 3 subunit 10| (eIF-3 theta) (Eukaryotic translation initiation factor 3 large subunit) (eIF3a) Length = 962 Score = 160 bits (406), Expect = 5e-40 Identities = 81/85 (95%), Positives = 82/85 (96%) Frame = +2 Query: 119 MATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDL 298 MATFAKPENALKRAEELIHVGQKQ+ALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDL Sbjct: 1 MATFAKPENALKRAEELIHVGQKQSALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDL 60 Query: 299 RKGRFAKDGLIQYRIVWPAVNVSSL 373 RKGRFAKDGLIQYRIV VNVSSL Sbjct: 61 RKGRFAKDGLIQYRIVCQQVNVSSL 85
>IF3A_ARATH (Q9LD55) Eukaryotic translation initiation factor 3 subunit 10| (eIF-3 theta) (Eukaryotic translation initiation factor 3 large subunit) (eIF3a) (p114) Length = 987 Score = 146 bits (368), Expect = 1e-35 Identities = 72/85 (84%), Positives = 79/85 (92%) Frame = +2 Query: 119 MATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDL 298 MA FAKPENALKRA+ELI+VGQKQ ALQALHDLITSKRYR+WQKPLEKIM KY++LCVDL Sbjct: 1 MANFAKPENALKRADELINVGQKQDALQALHDLITSKRYRAWQKPLEKIMFKYLDLCVDL 60 Query: 299 RKGRFAKDGLIQYRIVWPAVNVSSL 373 ++GRFAKDGLIQYRIV VNVSSL Sbjct: 61 KRGRFAKDGLIQYRIVCQQVNVSSL 85
>IF3A_TOBAC (Q40554) Eukaryotic translation initiation factor 3 subunit 10| (eIF-3 theta) (Eukaryotic translation initiation factor 3 large subunit) (eIF3a) (PNLA-35) Length = 958 Score = 144 bits (363), Expect = 5e-35 Identities = 71/85 (83%), Positives = 78/85 (91%) Frame = +2 Query: 119 MATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDL 298 MATFAKPENALKRAEELI VGQKQ ALQALHDLITS+RYR+WQK LE+IM KYVELCVD+ Sbjct: 1 MATFAKPENALKRAEELITVGQKQEALQALHDLITSRRYRAWQKTLERIMFKYVELCVDM 60 Query: 299 RKGRFAKDGLIQYRIVWPAVNVSSL 373 R+GRFAKDGLIQYRIV VN++SL Sbjct: 61 RRGRFAKDGLIQYRIVCQQVNINSL 85
>IF3A_HUMAN (Q14152) Eukaryotic translation initiation factor 3 subunit 10| (eIF-3 theta) (eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a) Length = 1382 Score = 101 bits (252), Expect = 4e-22 Identities = 48/84 (57%), Positives = 63/84 (75%) Frame = +2 Query: 122 ATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDLR 301 A F +PENALKRA E + VG+KQ AL L+D++ SK++R+WQK E IM+KY+ELCVDLR Sbjct: 3 AYFQRPENALKRANEFLEVGKKQPALDVLYDVMKSKKHRTWQKIHEPIMLKYLELCVDLR 62 Query: 302 KGRFAKDGLIQYRIVWPAVNVSSL 373 K AK+GL QY+ + VN+ SL Sbjct: 63 KSHLAKEGLYQYKNICQQVNIKSL 86
>IF3A_MOUSE (P23116) Eukaryotic translation initiation factor 3 subunit 10| (eIF-3 theta) (eIF3 p167) (eIF3 p180) (eIF3 p185) (eIF3a) (p162 protein) (Centrosomin) Length = 1344 Score = 101 bits (252), Expect = 4e-22 Identities = 48/84 (57%), Positives = 63/84 (75%) Frame = +2 Query: 122 ATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDLR 301 A F +PENALKRA E + VG+KQ AL L+D++ SK++R+WQK E IM+KY+ELCVDLR Sbjct: 3 AYFQRPENALKRANEFLEVGKKQPALDVLYDVMKSKKHRTWQKIHEPIMLKYLELCVDLR 62 Query: 302 KGRFAKDGLIQYRIVWPAVNVSSL 373 K AK+GL QY+ + VN+ SL Sbjct: 63 KSHLAKEGLYQYKNICQQVNIKSL 86
>IF3A_CAEEL (P34339) Probable eukaryotic translation initiation factor 3| subunit 10 (eIF-3 theta) (eIF3a) (Egg-laying defective protein 45) Length = 1076 Score = 91.3 bits (225), Expect = 5e-19 Identities = 44/82 (53%), Positives = 58/82 (70%) Frame = +2 Query: 128 FAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYVELCVDLRKG 307 F KPE ALKRAEELI VG++ AL LHD I ++R++ W E+IM+K++ELCVDL+K Sbjct: 6 FQKPEAALKRAEELIQVGKESDALDTLHDTIKARRHKQWTTVHEQIMIKHMELCVDLKKQ 65 Query: 308 RFAKDGLIQYRIVWPAVNVSSL 373 AKD L QY+ + +NV SL Sbjct: 66 HLAKDALFQYKALTQQINVKSL 87
>IF3A_YEAST (P38249) Eukaryotic translation initiation factor 3 110 kDa subunit| (eIF3 p110) (Translation initiation factor eIF3, p110 subunit) (eIF3a) Length = 964 Score = 82.4 bits (202), Expect = 2e-16 Identities = 40/71 (56%), Positives = 57/71 (80%), Gaps = 2/71 (2%) Frame = +2 Query: 134 KPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKP--LEKIMMKYVELCVDLRKG 307 +PENA+KRA+ELI VG+KQAALQ+LHD IT++R R W P +E ++ K++E+ V+L+KG Sbjct: 7 RPENAIKRADELISVGEKQAALQSLHDFITARRIR-WATPSTVEPVVFKFLEIGVELKKG 65 Query: 308 RFAKDGLIQYR 340 + KDGL QY+ Sbjct: 66 KLLKDGLHQYK 76
>IF3A_SCHPO (O74760) Probable eukaryotic translation initiation factor 3 110| kDa subunit (eIF3 p110) (Translation initiation factor eIF3, p110 subunit) (eIF3a) Length = 932 Score = 73.9 bits (180), Expect = 9e-14 Identities = 38/70 (54%), Positives = 51/70 (72%), Gaps = 1/70 (1%) Frame = +2 Query: 134 KPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQK-PLEKIMMKYVELCVDLRKGR 310 KPEN L+ A+ELI + Q +ALQ+LH+ I KR R+ Q LE IMM+++ELCV LRKG+ Sbjct: 7 KPENVLRLADELIALDQHSSALQSLHETIVLKRSRNAQGFSLEPIMMRFIELCVHLRKGK 66 Query: 311 FAKDGLIQYR 340 AK+GL Y+ Sbjct: 67 IAKEGLYTYK 76
>CHD1_HUMAN (O14646) Chromodomain-helicase-DNA-binding protein 1 (EC 3.6.1.-)| (ATP-dependent helicase CHD1) (CHD-1) Length = 1709 Score = 28.9 bits (63), Expect = 3.2 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 5/73 (6%) Frame = +2 Query: 101 RPLAPAMATFAKPENALKRAEELIHVGQKQAAL-----QALHDLITSKRYRSWQKPLEKI 265 RP+ A+ +PE L E+L H Q + + L + ++ + W+K L Sbjct: 1422 RPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYTNPEQIKQWRKNLWIF 1481 Query: 266 MMKYVELCVDLRK 304 + K+ E D RK Sbjct: 1482 VSKFTEF--DARK 1492
>CHD1_MOUSE (P40201) Chromodomain-helicase-DNA-binding protein 1 (EC 3.6.1.-)| (ATP-dependent helicase CHD1) (CHD-1) Length = 1711 Score = 28.5 bits (62), Expect = 4.1 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 5/73 (6%) Frame = +2 Query: 101 RPLAPAMATFAKPENALKRAEELIHVGQKQAAL-----QALHDLITSKRYRSWQKPLEKI 265 RP+ A+ +PE L E+L H Q + + L + ++ + W+K L Sbjct: 1422 RPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYSNPEQIKQWRKNLWIF 1481 Query: 266 MMKYVELCVDLRK 304 + K+ E D RK Sbjct: 1482 VSKFTEF--DARK 1492
>SL9A1_CRIGR (P48761) Sodium/hydrogen exchanger 1 (Na(+)/H(+) exchanger 1)| (NHE-1) (Solute carrier family 9 member 1) Length = 822 Score = 28.1 bits (61), Expect = 5.4 Identities = 18/64 (28%), Positives = 26/64 (40%) Frame = +2 Query: 101 RPLAPAMATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYV 280 RPL +A K E EE IH L + D+ + W+ L + KYV Sbjct: 504 RPLVDLLAVKKKQETKRSINEE-IHTQFLDHLLTGIEDICGHYGHHHWKDKLNRFNKKYV 562 Query: 281 ELCV 292 + C+ Sbjct: 563 KKCL 566
>SL9A1_BOVIN (Q28036) Sodium/hydrogen exchanger 1 (Na(+)/H(+) exchanger 1)| (NHE-1) (Solute carrier family 9 member 1) Length = 817 Score = 28.1 bits (61), Expect = 5.4 Identities = 18/64 (28%), Positives = 26/64 (40%) Frame = +2 Query: 101 RPLAPAMATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYV 280 RPL +A K E EE IH L + D+ + W+ L + KYV Sbjct: 500 RPLVDLLAVKKKQETKRSINEE-IHTQFLDHLLTGIEDICGHYGHHHWKDKLNRFNKKYV 558 Query: 281 ELCV 292 + C+ Sbjct: 559 KKCL 562
>SL9A1_RABIT (P23791) Sodium/hydrogen exchanger 1 (Na(+)/H(+) exchanger 1)| (NHE-1) (Solute carrier family 9 member 1) Length = 816 Score = 28.1 bits (61), Expect = 5.4 Identities = 18/64 (28%), Positives = 26/64 (40%) Frame = +2 Query: 101 RPLAPAMATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYV 280 RPL +A K E EE IH L + D+ + W+ L + KYV Sbjct: 500 RPLVDLLAVKKKQETKRSINEE-IHTQFLDHLLTGIEDICGHYGHHHWKDKLNRFNKKYV 558 Query: 281 ELCV 292 + C+ Sbjct: 559 KKCL 562
>SL9A1_RAT (P26431) Sodium/hydrogen exchanger 1 (Na(+)/H(+) exchanger 1)| (NHE-1) (Solute carrier family 9 member 1) Length = 820 Score = 28.1 bits (61), Expect = 5.4 Identities = 18/64 (28%), Positives = 26/64 (40%) Frame = +2 Query: 101 RPLAPAMATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYV 280 RPL +A K E EE IH L + D+ + W+ L + KYV Sbjct: 504 RPLVDLLAVKKKQETKRSINEE-IHTQFLDHLLTGIEDICGHYGHHHWKDKLNRFNKKYV 562 Query: 281 ELCV 292 + C+ Sbjct: 563 KKCL 566
>SL9A1_MOUSE (Q61165) Sodium/hydrogen exchanger 1 (Na(+)/H(+) exchanger 1)| (NHE-1) (Solute carrier family 9 member 1) Length = 820 Score = 28.1 bits (61), Expect = 5.4 Identities = 18/64 (28%), Positives = 26/64 (40%) Frame = +2 Query: 101 RPLAPAMATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYV 280 RPL +A K E EE IH L + D+ + W+ L + KYV Sbjct: 504 RPLVDLLAVKKKQETKRSINEE-IHTQFLDHLLTGIEDICGHYGHHHWKDKLNRFNKKYV 562 Query: 281 ELCV 292 + C+ Sbjct: 563 KKCL 566
>PEX10_MACFA (Q8HXW8) Peroxisome assembly protein 10 (Peroxin-10) (Peroxisome| biogenesis factor 10) Length = 326 Score = 28.1 bits (61), Expect = 5.4 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%) Frame = +2 Query: 107 LAPAMATFAKPENALKRAE--ELIHVGQKQAALQALHDLITSKRYRSWQKPLE 259 +APA A+ P ++ A+ E G + AA ALH L ++++ W+K +E Sbjct: 1 MAPAAAS---PPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVE 50
>PEX10_HUMAN (O60683) Peroxisome assembly protein 10 (Peroxin-10) (Peroxisome| biogenesis factor 10) (RING finger protein 69) Length = 326 Score = 28.1 bits (61), Expect = 5.4 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%) Frame = +2 Query: 107 LAPAMATFAKPENALKRAE--ELIHVGQKQAALQALHDLITSKRYRSWQKPLE 259 +APA A+ P ++ A+ E G + AA ALH L ++++ W+K +E Sbjct: 1 MAPAAAS---PPEVIRAAQKDEYYRGGLRSAAGGALHSLAGARKWLEWRKEVE 50
>SL9A1_PIG (P48762) Sodium/hydrogen exchanger 1 (Na(+)/H(+) exchanger 1)| (NHE-1) (Solute carrier family 9 member 1) Length = 818 Score = 28.1 bits (61), Expect = 5.4 Identities = 18/64 (28%), Positives = 26/64 (40%) Frame = +2 Query: 101 RPLAPAMATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYV 280 RPL +A K E EE IH L + D+ + W+ L + KYV Sbjct: 500 RPLVDLLAVKKKQETKRSINEE-IHTQFLDHLLTGIEDICGHYGHHHWKDKLNRFNKKYV 558 Query: 281 ELCV 292 + C+ Sbjct: 559 KKCL 562
>SL9A1_HUMAN (P19634) Sodium/hydrogen exchanger 1 (Na(+)/H(+) exchanger 1)| (NHE-1) (Solute carrier family 9 member 1) (Na(+)/H(+) antiporter, amiloride-sensitive) (APNH) Length = 815 Score = 28.1 bits (61), Expect = 5.4 Identities = 18/64 (28%), Positives = 26/64 (40%) Frame = +2 Query: 101 RPLAPAMATFAKPENALKRAEELIHVGQKQAALQALHDLITSKRYRSWQKPLEKIMMKYV 280 RPL +A K E EE IH L + D+ + W+ L + KYV Sbjct: 500 RPLVDLLAVKKKQETKRSINEE-IHTQFLDHLLTGIEDICGHYGHHHWKDKLNRFNKKYV 558 Query: 281 ELCV 292 + C+ Sbjct: 559 KKCL 562
>AROC_STRCO (Q9KXQ4) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 394 Score = 27.7 bits (60), Expect = 7.1 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 9/58 (15%) Frame = +1 Query: 85 SRSAPET-PRPGHGDLR--------EARERAQESGGVDTCWTKAGCAAGAA*SHYIKE 231 +R+AP T PRPGH DL EAR + + +T A A GA Y+KE Sbjct: 105 ARNAPLTRPRPGHADLAGMQKYGFDEARPILERASARETA---ARVALGAVARSYLKE 159
>AROC_STRAW (Q827S0) Chorismate synthase (EC 4.2.3.5)| (5-enolpyruvylshikimate-3-phosphate phospholyase) Length = 394 Score = 27.7 bits (60), Expect = 7.1 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 9/58 (15%) Frame = +1 Query: 85 SRSAPET-PRPGHGDLR--------EARERAQESGGVDTCWTKAGCAAGAA*SHYIKE 231 +R+AP T PRPGH DL EAR + + +T A A GA Y+KE Sbjct: 105 ARNAPLTRPRPGHADLAGMQKYGFDEARPILERASARETA---ARVALGAVARSYLKE 159
>PROA_PSYAR (Q4FUZ5) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 430 Score = 27.7 bits (60), Expect = 7.1 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = +2 Query: 119 MATFAKPENALKRAEELIHVGQKQAALQALHDLITSKR 232 M K A RA + G K AAL A+HD++ + + Sbjct: 10 MQNVGKEARAASRALAAANTGDKNAALMAIHDVLKNAK 47 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,073,444 Number of Sequences: 219361 Number of extensions: 588375 Number of successful extensions: 1761 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 1727 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1759 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 1407308304 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
