ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl12c01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
2dbj|AP003915.4| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
3dbj|AP004275.3| Oryza sativa (japonica cultivar-group) genomic D... 56 1e-04
4dbj|AK120815.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 4e-04
5dbj|AK119897.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 4e-04
6gb|AY895166.1| Gallus gallus BAC bW108010 chemokine-like ligand ... 44 0.40
7gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome 42 1.6
8emb|AL592466.9| Human DNA sequence from clone RP11-428G2 on chro... 42 1.6
9gb|AC010906.10| Homo sapiens BAC clone RP11-566O4 from 2, comple... 42 1.6
10dbj|D89070.1| Rattus norvegicus DNA for non-inducible carbony re... 42 1.6
11ref|XM_482657.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.3
12ref|XM_470988.1| Oryza sativa (japonica cultivar-group), predic... 40 6.3
13ref|XM_464075.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.3
14ref|XM_479012.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.3
15ref|XM_471280.1| Oryza sativa (japonica cultivar-group), predic... 40 6.3
16gb|AC119670.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.3
17ref|XM_855784.1| PREDICTED: Canis familiaris similar to Numb-int... 40 6.3
18ref|XM_544660.2| PREDICTED: Canis familiaris similar to Numb-int... 40 6.3
19gb|BC107561.1| Rattus norvegicus pleckstrin homology domain cont... 40 6.3
20ref|NM_001037202.1| Rattus norvegicus pleckstrin homology domain... 40 6.3
21emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genom... 40 6.3
22emb|AL662989.3|OSJN00190 Oryza sativa genomic DNA, chromosome 4,... 40 6.3
23gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 40 6.3
24gb|AC119071.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0... 40 6.3
25dbj|AK154510.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 6.3
26dbj|AK164128.1| Mus musculus 12 days embryo spinal cord cDNA, RI... 40 6.3
27gb|BC020025.1| Mus musculus pleckstrin homology domain containin... 40 6.3
28ref|NM_146030.1| Mus musculus pleckstrin homology domain contain... 40 6.3
29dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
30dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
31dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
32dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
33gb|AC156835.2| Mus musculus BAC clone RP23-322L4 from chromosome... 40 6.3
34dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 6.3
35dbj|AP005647.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
36dbj|AP004564.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
37dbj|AP004764.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.3
38dbj|AK105557.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.3
39dbj|AK070553.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.3
40gb|AC154511.2| Mus musculus BAC clone RP24-69N19 from 13, comple... 40 6.3
41gb|AC123620.14| Mus musculus chromosome 12, clone RP23-53J21, co... 40 6.3
42gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.3
43emb|AL606620.3|OSJN00065 Oryza sativa genomic DNA, chromosome 4,... 40 6.3
44emb|AL672290.16| Mouse DNA sequence from clone RP23-471M13 on ch... 40 6.3
45emb|AL590969.12| Mouse DNA sequence from clone RP23-281C18 on ch... 40 6.3 
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 64/76 (84%)
 Strand = Plus / Minus

                                                                            
Query: 128      ttcttccatgattcacgagggcaggccatgtctcccctgctcctccagtccctctgcata 187
                |||||||||||||| ||| |||  ||||||||||||||||| ||    | ||||||| ||
Sbjct: 24298083 ttcttccatgattctcgaaggcgtgccatgtctcccctgcttcttggattcctctgctta 24298024

                                
Query: 188      ctcctcctcgcaggta 203
                |||||| |||||||||
Sbjct: 24298023 ctcctcttcgcaggta 24298008



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 9        cacctctcgtcgtcctcgtcttcg 32
                |||||| |||||||||||||||||
Sbjct: 24317201 cacctcgcgtcgtcctcgtcttcg 24317224
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>dbj|AP003915.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1579_C03
          Length = 122851

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 64/76 (84%)
 Strand = Plus / Minus

                                                                         
Query: 128   ttcttccatgattcacgagggcaggccatgtctcccctgctcctccagtccctctgcata 187
             |||||||||||||| ||| |||  ||||||||||||||||| ||    | ||||||| ||
Sbjct: 31276 ttcttccatgattctcgaaggcgtgccatgtctcccctgcttcttggattcctctgctta 31217

                             
Query: 188   ctcctcctcgcaggta 203
             |||||| |||||||||
Sbjct: 31216 ctcctcttcgcaggta 31201



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 9     cacctctcgtcgtcctcgtcttcg 32
             |||||| |||||||||||||||||
Sbjct: 50394 cacctcgcgtcgtcctcgtcttcg 50417
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>dbj|AP004275.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0453E05
          Length = 137364

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 64/76 (84%)
 Strand = Plus / Minus

                                                                          
Query: 128    ttcttccatgattcacgagggcaggccatgtctcccctgctcctccagtccctctgcata 187
              |||||||||||||| ||| |||  ||||||||||||||||| ||    | ||||||| ||
Sbjct: 109634 ttcttccatgattctcgaaggcgtgccatgtctcccctgcttcttggattcctctgctta 109575

                              
Query: 188    ctcctcctcgcaggta 203
              |||||| |||||||||
Sbjct: 109574 ctcctcttcgcaggta 109559



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 9      cacctctcgtcgtcctcgtcttcg 32
              |||||| |||||||||||||||||
Sbjct: 128752 cacctcgcgtcgtcctcgtcttcg 128775
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>dbj|AK120815.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014N07, full
           insert sequence
          Length = 3856

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                       
Query: 128 ttcttccatgattcacgagggcaggccatgtctcccctgctcctccagtccctctgcata 187
           |||||||||||||| ||| |||  ||||||||||||||||| ||    | ||||||| ||
Sbjct: 175 ttcttccatgattctcgaaggcgtgccatgtctcccctgcttcttggattcctctgctta 234

                          
Query: 188 ctcctcctcgcaggt 202
           |||||| ||||||||
Sbjct: 235 ctcctcttcgcaggt 249
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>dbj|AK119897.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-180-C07, full
           insert sequence
          Length = 3732

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                       
Query: 128 ttcttccatgattcacgagggcaggccatgtctcccctgctcctccagtccctctgcata 187
           |||||||||||||| ||| |||  ||||||||||||||||| ||    | ||||||| ||
Sbjct: 134 ttcttccatgattctcgaaggcgtgccatgtctcccctgcttcttggattcctctgctta 193

                          
Query: 188 ctcctcctcgcaggt 202
           |||||| ||||||||
Sbjct: 194 ctcctcttcgcaggt 208
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>gb|AY895166.1| Gallus gallus BAC bW108010 chemokine-like ligand 1, SCYA4, chemokine
             K203, and chemokine ah294 genes, complete cds
          Length = 112034

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 365   acaaggaggtgctggtggagct 386
             ||||||||||||||||||||||
Sbjct: 30242 acaaggaggtgctggtggagct 30221
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>gb|CP000127.1| Nitrosococcus oceani ATCC 19707, complete genome
          Length = 3481691

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 318     ggtggtgctgataggcgcgca 338
               |||||||||||||||||||||
Sbjct: 1769897 ggtggtgctgataggcgcgca 1769917
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>emb|AL592466.9| Human DNA sequence from clone RP11-428G2 on chromosome 10 Contains a
             novel gene, complete sequence
          Length = 113271

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 26    gtcttcgaattgcgggggaaggcaa 50
             |||||||| ||||||||||||||||
Sbjct: 78034 gtcttcgatttgcgggggaaggcaa 78058
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>gb|AC010906.10| Homo sapiens BAC clone RP11-566O4 from 2, complete sequence
          Length = 208571

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 156  tgtctcccctgctcctccagtccct 180
            ||||||||||||||||||| |||||
Sbjct: 8453 tgtctcccctgctcctccattccct 8429
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>dbj|D89070.1| Rattus norvegicus DNA for non-inducible carbony reductase, complete
           cds
          Length = 894

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 368 aggaggtgctggtggagctca 388
           |||||||||||||||||||||
Sbjct: 495 aggaggtgctggtggagctca 515
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>ref|XM_482657.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 429

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 9   cacctctcgtcgtcctcgtcttcg 32
           |||||| |||||||||||||||||
Sbjct: 152 cacctcgcgtcgtcctcgtcttcg 175
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>ref|XM_470988.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 981

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 9   cacctctcgtcgtcctcgtcttcg 32
           |||||| |||||||||||||||||
Sbjct: 146 cacctcgcgtcgtcctcgtcttcg 169
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>ref|XM_464075.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 243

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 9   cacctctcgtcgtcctcgtcttcg 32
           |||||| |||||||||||||||||
Sbjct: 212 cacctcgcgtcgtcctcgtcttcg 189
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>ref|XM_479012.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 363

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 9   cacctctcgtcgtcctcgtcttcg 32
           |||||| |||||||||||||||||
Sbjct: 101 cacctcgcgtcgtcctcgtcttcg 124
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>ref|XM_471280.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 4533

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 367  aaggaggtgctggtggagct 386
            ||||||||||||||||||||
Sbjct: 3421 aaggaggtgctggtggagct 3402
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>gb|AC119670.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0007H22, complete sequence
          Length = 160938

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 9     cacctctcgtcgtcctcgtcttcg 32
             |||||| |||||||||||||||||
Sbjct: 96903 cacctcgcgtcgtcctcgtcttcg 96926
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>ref|XM_855784.1| PREDICTED: Canis familiaris similar to Numb-interacting protein,
           transcript variant 4 (LOC487536), mRNA
          Length = 1119

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 170 ctccagtccctctgcatactcctc 193
           ||||||||||| ||||||||||||
Sbjct: 306 ctccagtccctttgcatactcctc 283
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>ref|XM_544660.2| PREDICTED: Canis familiaris similar to Numb-interacting protein,
           transcript variant 3 (LOC487536), mRNA
          Length = 1254

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 170 ctccagtccctctgcatactcctc 193
           ||||||||||| ||||||||||||
Sbjct: 441 ctccagtccctttgcatactcctc 418
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>gb|BC107561.1| Rattus norvegicus pleckstrin homology domain containing, family H
           (with MyTH4 domain) member 3, mRNA (cDNA clone
           MGC:124855 IMAGE:7937018), complete cds
          Length = 3001

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 13  tctcgtcgtcctcgtcttcg 32
           ||||||||||||||||||||
Sbjct: 536 tctcgtcgtcctcgtcttcg 517
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>ref|NM_001037202.1| Rattus norvegicus pleckstrin homology domain containing, family H
           (with MyTH4 domain) member 3 (Plekhh3), mRNA
          Length = 3001

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 13  tctcgtcgtcctcgtcttcg 32
           ||||||||||||||||||||
Sbjct: 536 tctcgtcgtcctcgtcttcg 517
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>emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genome; segment 1/16
          Length = 349315

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     ctcgtcgtcctcgtcttcga 33
              ||||||||||||||||||||
Sbjct: 307184 ctcgtcgtcctcgtcttcga 307165
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>emb|AL662989.3|OSJN00190 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0091C12,
             complete sequence
          Length = 138715

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 367   aaggaggtgctggtggagct 386
             ||||||||||||||||||||
Sbjct: 37401 aaggaggtgctggtggagct 37420
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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 14      ctcgtcgtcctcgtcttcga 33
               ||||||||||||||||||||
Sbjct: 1286309 ctcgtcgtcctcgtcttcga 1286328
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>gb|AC119071.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0044D15 BAC genomic
              sequence, complete sequence
          Length = 144544

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 9      cacctctcgtcgtcctcgtcttcg 32
              |||||| |||||||||||||||||
Sbjct: 120796 cacctcgcgtcgtcctcgtcttcg 120773
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>dbj|AK154510.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
           full-length enriched library, clone:F630041G20
           product:hypothetical Core domain in kinesin and myosin
           motor/Pleckstrin-like/Band 4.1/PH domain profile/FERM
           domain profile/Proline-rich region
           profile/Ras-associating (RA) domain
           profile/Pleckstrin-homology-related/FERM/Peptidase S1,
           chymotrypsin containing protein, full insert sequence
          Length = 3010

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 13  tctcgtcgtcctcgtcttcg 32
           ||||||||||||||||||||
Sbjct: 553 tctcgtcgtcctcgtcttcg 534
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>dbj|AK164128.1| Mus musculus 12 days embryo spinal cord cDNA, RIKEN full-length
           enriched library, clone:C530042D12 product:hypothetical
           Band 4.1/FERM domain profile/Proline-rich region
           profile/Ras-associating (RA) domain profile/FERM
           containing protein, full insert sequence
          Length = 3016

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 13  tctcgtcgtcctcgtcttcg 32
           ||||||||||||||||||||
Sbjct: 553 tctcgtcgtcctcgtcttcg 534
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>gb|BC020025.1| Mus musculus pleckstrin homology domain containing, family H (with
           MyTH4 domain) member 3, mRNA (cDNA clone MGC:27854
           IMAGE:3490992), complete cds
          Length = 3020

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 13  tctcgtcgtcctcgtcttcg 32
           ||||||||||||||||||||
Sbjct: 537 tctcgtcgtcctcgtcttcg 518
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>ref|NM_146030.1| Mus musculus pleckstrin homology domain containing, family H (with
           MyTH4 domain) member 3 (Plekhh3), mRNA
          Length = 3020

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 13  tctcgtcgtcctcgtcttcg 32
           ||||||||||||||||||||
Sbjct: 537 tctcgtcgtcctcgtcttcg 518
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 367     aaggaggtgctggtggagct 386
               ||||||||||||||||||||
Sbjct: 9439283 aaggaggtgctggtggagct 9439302



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 9      cacctctcgtcgtcctcgtcttcg 32
              |||||| |||||||||||||||||
Sbjct: 436737 cacctcgcgtcgtcctcgtcttcg 436760
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 9       cacctctcgtcgtcctcgtcttcg 32
               |||||| |||||||||||||||||
Sbjct: 6789948 cacctcgcgtcgtcctcgtcttcg 6789925
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 9        cacctctcgtcgtcctcgtcttcg 32
                |||||| |||||||||||||||||
Sbjct: 21701881 cacctcgcgtcgtcctcgtcttcg 21701904
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 9       cacctctcgtcgtcctcgtcttcg 32
               |||||| |||||||||||||||||
Sbjct: 2046317 cacctcgcgtcgtcctcgtcttcg 2046340
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>gb|AC156835.2| Mus musculus BAC clone RP23-322L4 from chromosome 9, complete sequence
          Length = 216124

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 164    ctgctcctccagtccctctg 183
              ||||||||||||||||||||
Sbjct: 153600 ctgctcctccagtccctctg 153619
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 423     ggcggctacgacgggtggcaggag 446
               |||||||||| |||||||||||||
Sbjct: 3749695 ggcggctacgccgggtggcaggag 3749672
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>dbj|AP005647.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0026E05
          Length = 159860

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 9     cacctctcgtcgtcctcgtcttcg 32
             |||||| |||||||||||||||||
Sbjct: 96525 cacctcgcgtcgtcctcgtcttcg 96548
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>dbj|AP004564.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0479C12
          Length = 136799

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 9     cacctctcgtcgtcctcgtcttcg 32
             |||||| |||||||||||||||||
Sbjct: 69451 cacctcgcgtcgtcctcgtcttcg 69474
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>dbj|AP004764.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0708B04
          Length = 170523

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 9      cacctctcgtcgtcctcgtcttcg 32
              |||||| |||||||||||||||||
Sbjct: 162055 cacctcgcgtcgtcctcgtcttcg 162078
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>dbj|AK105557.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-128-B05, full
           insert sequence
          Length = 1861

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 9   cacctctcgtcgtcctcgtcttcg 32
           |||||| |||||||||||||||||
Sbjct: 112 cacctcgcgtcgtcctcgtcttcg 135
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>dbj|AK070553.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023059A13, full
           insert sequence
          Length = 1100

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 9   cacctctcgtcgtcctcgtcttcg 32
           |||||| |||||||||||||||||
Sbjct: 188 cacctcgcgtcgtcctcgtcttcg 211
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>gb|AC154511.2| Mus musculus BAC clone RP24-69N19 from 13, complete sequence
          Length = 197061

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 161    cccctgctcctccagtccctctgc 184
              |||||||||||||||||| |||||
Sbjct: 100707 cccctgctcctccagtccttctgc 100730
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>gb|AC123620.14| Mus musculus chromosome 12, clone RP23-53J21, complete sequence
          Length = 182783

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 164    ctgctcctccagtccctctg 183
              ||||||||||||||||||||
Sbjct: 125538 ctgctcctccagtccctctg 125519
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 9       cacctctcgtcgtcctcgtcttcg 32
               |||||| |||||||||||||||||
Sbjct: 6856415 cacctcgcgtcgtcctcgtcttcg 6856392
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>emb|AL606620.3|OSJN00065 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0085F13,
             complete sequence
          Length = 130249

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 9     cacctctcgtcgtcctcgtcttcg 32
             |||||| |||||||||||||||||
Sbjct: 75489 cacctcgcgtcgtcctcgtcttcg 75512
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>emb|AL672290.16| Mouse DNA sequence from clone RP23-471M13 on chromosome X, complete
              sequence
          Length = 178341

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 161    cccctgctcctccagtccctctgc 184
              |||||||||||||||||| |||||
Sbjct: 117920 cccctgctcctccagtccttctgc 117897
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>emb|AL590969.12| Mouse DNA sequence from clone RP23-281C18 on chromosome 11, complete
              sequence
          Length = 250353

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 13     tctcgtcgtcctcgtcttcg 32
              ||||||||||||||||||||
Sbjct: 218760 tctcgtcgtcctcgtcttcg 218741


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,586,663
Number of Sequences: 3902068
Number of extensions: 2586663
Number of successful extensions: 52066
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51784
Number of HSP's gapped (non-prelim): 282
length of query: 464
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 442
effective length of database: 17,147,199,772
effective search space: 7579062299224
effective search space used: 7579062299224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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