>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 44.1 bits (22), Expect = 0.23
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 243     gatcccgctggagacggcggcg 264
               ||||||||||||||||||||||
Sbjct: 4487997 gatcccgctggagacggcggcg 4488018

>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 42.1 bits (21), Expect = 0.90
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                        
Query: 37      tcgccgggttctcctgcgaagacca 61
               |||||||||||||| ||||||||||
Sbjct: 6130404 tcgccgggttctcccgcgaagacca 6130428

>gb|CP000150.1| Burkholderia sp. 383 chromosome 3, complete sequence
          Length = 1395069

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 153     cggcggcgatcctcgagagcagcgtgtc 180
               |||||||||| ||||| |||||||||||
Sbjct: 1370239 cggcggcgatgctcgacagcagcgtgtc 1370212

>ref|NM_191085.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 327

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 255 gacggcggcggcagaggcgg 274
           ||||||||||||||||||||
Sbjct: 264 gacggcggcggcagaggcgg 283

>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 233     acgagacgaggatcccgctggaga 256
               ||||||||| ||||||||||||||
Sbjct: 2434542 acgagacgaagatcccgctggaga 2434519

>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 252      ggagacggcggcggcagagg 271
                ||||||||||||||||||||
Sbjct: 23913108 ggagacggcggcggcagagg 23913127

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 255      gacggcggcggcagaggcgg 274
                ||||||||||||||||||||
Sbjct: 34793979 gacggcggcggcagaggcgg 34793998

>dbj|AP006878.1| Thermococcus kodakarensis KOD1 DNA, complete genome
          Length = 2088737

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 47     ctcctgcgaagaccaccgac 66
              ||||||||||||||||||||
Sbjct: 173137 ctcctgcgaagaccaccgac 173118

>dbj|AP003411.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:B1148D12
          Length = 132060

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 255    gacggcggcggcagaggcgg 274
              ||||||||||||||||||||
Sbjct: 109219 gacggcggcggcagaggcgg 109238

>dbj|AP003255.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0454H12
          Length = 161004

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   gacggcggcggcagaggcgg 274
             ||||||||||||||||||||
Sbjct: 53151 gacggcggcggcagaggcgg 53170

>dbj|AP003616.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0490F09
          Length = 149542

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 252   ggagacggcggcggcagagg 271
             ||||||||||||||||||||
Sbjct: 42719 ggagacggcggcggcagagg 42738

>emb|AJ344384.1|HIM344384 Human immunodeficiency virus type 2 proviral nef gene, genomic RNA,
           isolate patient 741
          Length = 1015

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 185 ccatggaaagacccaacagc 204
           ||||||||||||||||||||
Sbjct: 205 ccatggaaagacccaacagc 224

>emb|AJ344381.1|HIM344381 Human immunodeficiency virus type 2 proviral nef gene, genomic RNA,
           isolate patient P1
          Length = 1015

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 183 ccccatggaaagacccaaca 202
           ||||||||||||||||||||
Sbjct: 203 ccccatggaaagacccaaca 222

>dbj|AK108448.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-143-C06, full
           insert sequence
          Length = 660

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 252 ggagacggcggcggcagagg 271
           ||||||||||||||||||||
Sbjct: 99  ggagacggcggcggcagagg 118

>gb|AC162521.4| Mus musculus chromosome 7, clone RP23-356O13, complete sequence
          Length = 207307

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 209    aggagggagaaggggactct 228
              ||||||||||||||||||||
Sbjct: 175548 aggagggagaaggggactct 175529

>emb|X12874.1|APGUCYC Sea urchin (Arbacia punctulata) mRNA for guanylate cyclase
          Length = 3444

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 183  ccccatggaaagacccaaca 202
            ||||||||||||||||||||
Sbjct: 2606 ccccatggaaagacccaaca 2625


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,089,383
Number of Sequences: 3902068
Number of extensions: 2089383
Number of successful extensions: 43368
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43116
Number of HSP's gapped (non-prelim): 252
length of query: 274
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 252
effective length of database: 17,147,199,772
effective search space: 4321094342544
effective search space used: 4321094342544
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)