ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl12b06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NIP80_YEAST (P33420) Protein NIP80 (Protein NIP100) 30 2.0
2MIAA_DESPS (Q6ALW6) tRNA delta(2)-isopentenylpyrophosphate trans... 28 7.8

>NIP80_YEAST (P33420) Protein NIP80 (Protein NIP100)|
          Length = 868

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +2

Query: 170 KINEDWPEKDATVVHKNKVRKKKLSDLGSQ 259
           K+ ED  E++  ++ +N V  KK+SDLG Q
Sbjct: 219 KVQEDLLEENTQLLEENAVLSKKISDLGLQ 248



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>MIAA_DESPS (Q6ALW6) tRNA delta(2)-isopentenylpyrophosphate transferase (EC|
           2.5.1.8) (IPP transferase) (Isopentenyl-diphosphate:tRNA
           isopentenyltransferase) (IPTase) (IPPT)
          Length = 314

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 158 KRYAKINEDWPEKDATVVHKNKVRKKKLSDLGSQWSXDEL 277
           +RYAK    W  KD  +    K  K ++ D   QW  D+L
Sbjct: 271 RRYAKRQYTWFNKDEDLHWYQKESKAEIVDRVGQWLEDQL 310


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,539,192
Number of Sequences: 219361
Number of extensions: 495562
Number of successful extensions: 1424
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1423
length of database: 80,573,946
effective HSP length: 73
effective length of database: 64,560,593
effective search space used: 1549454232
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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