ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl12b03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_197073.1| Oryza sativa (japonica cultivar-group) hypothet... 186 4e-44
2gb|AC087182.12| Oryza sativa chromosome 10 BAC OSJNBa0029C15 gen... 119 8e-24
3dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 119 8e-24
4gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 119 8e-24
5ref|NM_112868.2| Arabidopsis thaliana electron transporter AT3G1... 74 4e-10
6dbj|AB025631.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 64 4e-07
7gb|AC168054.4| Mus musculus BAC clone RP24-571H12 from chromosom... 42 1.5
8dbj|AK129661.1| Homo sapiens cDNA FLJ26150 fis, clone ADG00494 42 1.5
9emb|AL163193.5|HS73E6 Homo sapiens chromosome 9 BAC RP11-73E6, c... 42 1.5
10gb|AC173341.1| Mus musculus BAC clone RP24-332P6 from chromosome... 42 1.5
11ref|XM_470393.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.0
12gb|AC108394.13| Mus musculus chromosome 1, clone RP24-322K23, co... 40 6.0
13gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 40 6.0
14gb|AC147082.2| Mus musculus BAC clone RP23-321E5 from chromosome... 40 6.0
15gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.0
16gb|AC092852.6| Oryza sativa chromosome 3 BAC OSJNBa0032G11 genom... 40 6.0
17gb|AY386264.1| Orf virus strain OV-SA00, complete genome 40 6.0
18gb|AC117219.2| Mus musculus BAC clone RP23-344D18 from chromosom... 40 6.0
19emb|BX842581.1| Mycobacterium tuberculosis H37Rv complete genome... 40 6.0
20dbj|AP007167.1| Aspergillus oryzae RIB40 genomic DNA, SC020 40 6.0
21dbj|AB218617.1| Rattus norvegicus genomic DNA, chromosome 4, clo... 40 6.0
22gb|AC112640.3| Homo sapiens 3 BAC RP11-817M15 (Roswell Park Canc... 40 6.0
23gb|AF189006.1|AF189006 Mycobacterium tuberculosis Mpt83 (mpt83) ... 40 6.0
24gb|DQ184476.1| Orf virus strain NZ2, complete genome 40 6.0
25dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.0
26gb|AC007491.7| Homo sapiens chromosome 16 clone RP11-182C10, com... 40 6.0
27gb|AC017099.11| Homo sapiens BAC clone RP11-542D13 from 2, compl... 40 6.0
28gb|AC013272.5| Homo sapiens BAC clone RP11-401C13 from 2, comple... 40 6.0
29gb|AC018892.8| Homo sapiens BAC clone RP11-499E14 from 2, comple... 40 6.0
30gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.0
31gb|AC160020.1| Homo sapiens BAC clone RP11-540L21 from 2, comple... 40 6.0
32gb|AC148026.2| Homo sapiens BAC clone RP11-625I24 from 2, comple... 40 6.0
33gb|AC099706.8| Mus musculus, clone RP23-267P24, complete sequence 40 6.0
34ref|XM_574217.1| PREDICTED: Rattus norvegicus similar to short c... 40 6.0
35dbj|AK101625.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.0
36emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 6.0
37gb|BC076390.1| Rattus norvegicus short coiled-coil protein, mRNA... 40 6.0
38gb|BC086417.1| Rattus norvegicus short coiled-coil protein, mRNA... 40 6.0
39gb|AF037625.1|AF037625 Rana catesbeiana dihydropyridine receptor... 40 6.0
40ref|NM_001013235.1| Rattus norvegicus short coiled-coil protein ... 40 6.0
41emb|AL844221.6| Mouse DNA sequence from clone RP23-445C3 on chro... 40 6.0
42gb|AC166749.6| Mus musculus chromosome 1, clone RP23-463A15, com... 40 6.0
43emb|AJ298056.1|CFA298056 Crithidia fasciculata partial prp8 gene... 40 6.0 
>ref|NM_197073.1| Oryza sativa (japonica cultivar-group) hypothetical protein
           (OSJNBa0029C15.25), mRNA
          Length = 3759

 Score =  186 bits (94), Expect = 4e-44
 Identities = 169/194 (87%)
 Strand = Plus / Plus

                                                                       
Query: 224 tggcaggtcttgaccagggccaacttctcttcccagatccggctccacccccacgtcctc 283
           ||||||||| ||||||||||||||||||| |||||||||||||| ||||||||| |||| 
Sbjct: 127 tggcaggtcctgaccagggccaacttctcctcccagatccggcttcacccccacatcctg 186

                                                                       
Query: 284 ctcgtcgtcaccatgccatggtatggcgagtcaagatcactgatggctgaaatacagcag 343
           ||||||||||||||||||||||||||||||||||||||||||||||| || ||| | |  
Sbjct: 187 ctcgtcgtcaccatgccatggtatggcgagtcaagatcactgatggccgagatagaactt 246

                                                                       
Query: 344 cttgtcgcaaccgatgagatggagctagggcgccttaagttaatggttgtttacagaaat 403
            | || ||  ||||||||  |||||| ||||  || ||||| |||| ||| |||||||||
Sbjct: 247 ttggttgctgccgatgagcaggagctcgggcatctcaagttgatggctgtgtacagaaat 306

                         
Query: 404 tctgagaagttgct 417
           ||||||||||||||
Sbjct: 307 tctgagaagttgct 320
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>gb|AC087182.12| Oryza sativa chromosome 10 BAC OSJNBa0029C15 genomic sequence, complete
              sequence
          Length = 148816

 Score =  119 bits (60), Expect = 8e-24
 Identities = 75/80 (93%)
 Strand = Plus / Plus

                                                                          
Query: 224    tggcaggtcttgaccagggccaacttctcttcccagatccggctccacccccacgtcctc 283
              ||||||||| ||||||||||||||||||| |||||||||||||| ||||||||| |||| 
Sbjct: 107562 tggcaggtcctgaccagggccaacttctcctcccagatccggcttcacccccacatcctg 107621

                                  
Query: 284    ctcgtcgtcaccatgccatg 303
              ||||||||||||||||||||
Sbjct: 107622 ctcgtcgtcaccatgccatg 107641



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 95/115 (82%)
 Strand = Plus / Plus

                                                                          
Query: 303    ggtatggcgagtcaagatcactgatggctgaaatacagcagcttgtcgcaaccgatgaga 362
              |||||||||||||||||||||||||||| || ||| | |   | || ||  |||||||| 
Sbjct: 108164 ggtatggcgagtcaagatcactgatggccgagatagaacttttggttgctgccgatgagc 108223

                                                                     
Query: 363    tggagctagggcgccttaagttaatggttgtttacagaaattctgagaagttgct 417
               |||||| ||||  || ||||| |||| ||| |||||||||||||||||||||||
Sbjct: 108224 aggagctcgggcatctcaagttgatggctgtgtacagaaattctgagaagttgct 108278
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  119 bits (60), Expect = 8e-24
 Identities = 75/80 (93%)
 Strand = Plus / Minus

                                                                            
Query: 224      tggcaggtcttgaccagggccaacttctcttcccagatccggctccacccccacgtcctc 283
                ||||||||| ||||||||||||||||||| |||||||||||||| ||||||||| |||| 
Sbjct: 17824479 tggcaggtcctgaccagggccaacttctcctcccagatccggcttcacccccacatcctg 17824420

                                    
Query: 284      ctcgtcgtcaccatgccatg 303
                ||||||||||||||||||||
Sbjct: 17824419 ctcgtcgtcaccatgccatg 17824400



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 95/115 (82%)
 Strand = Plus / Minus

                                                                            
Query: 303      ggtatggcgagtcaagatcactgatggctgaaatacagcagcttgtcgcaaccgatgaga 362
                |||||||||||||||||||||||||||| || ||| | |   | || ||  |||||||| 
Sbjct: 17823877 ggtatggcgagtcaagatcactgatggccgagatagaacttttggttgctgccgatgagc 17823818

                                                                       
Query: 363      tggagctagggcgccttaagttaatggttgtttacagaaattctgagaagttgct 417
                 |||||| ||||  || ||||| |||| ||| |||||||||||||||||||||||
Sbjct: 17823817 aggagctcgggcatctcaagttgatggctgtgtacagaaattctgagaagttgct 17823763
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  119 bits (60), Expect = 8e-24
 Identities = 75/80 (93%)
 Strand = Plus / Minus

                                                                            
Query: 224      tggcaggtcttgaccagggccaacttctcttcccagatccggctccacccccacgtcctc 283
                ||||||||| ||||||||||||||||||| |||||||||||||| ||||||||| |||| 
Sbjct: 17833732 tggcaggtcctgaccagggccaacttctcctcccagatccggcttcacccccacatcctg 17833673

                                    
Query: 284      ctcgtcgtcaccatgccatg 303
                ||||||||||||||||||||
Sbjct: 17833672 ctcgtcgtcaccatgccatg 17833653



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 95/115 (82%)
 Strand = Plus / Minus

                                                                            
Query: 303      ggtatggcgagtcaagatcactgatggctgaaatacagcagcttgtcgcaaccgatgaga 362
                |||||||||||||||||||||||||||| || ||| | |   | || ||  |||||||| 
Sbjct: 17833130 ggtatggcgagtcaagatcactgatggccgagatagaacttttggttgctgccgatgagc 17833071

                                                                       
Query: 363      tggagctagggcgccttaagttaatggttgtttacagaaattctgagaagttgct 417
                 |||||| ||||  || ||||| |||| ||| |||||||||||||||||||||||
Sbjct: 17833070 aggagctcgggcatctcaagttgatggctgtgtacagaaattctgagaagttgct 17833016
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>ref|NM_112868.2| Arabidopsis thaliana electron transporter AT3G19780 mRNA, complete
           cds
          Length = 3257

 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 67/77 (87%)
 Strand = Plus / Plus

                                                                       
Query: 245 aacttctcttcccagatccggctccacccccacgtcctcctcgtcgtcaccatgccatgg 304
           ||||||||||| |||||||| |||||||| |||||||||||| | |||||||  ||||||
Sbjct: 139 aacttctcttctcagatccgtctccaccctcacgtcctcctctttgtcaccactccatgg 198

                            
Query: 305 tatggcgagtcaagatc 321
           | ||| ||||| |||||
Sbjct: 199 tgtggtgagtccagatc 215
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>dbj|AB025631.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MPN9
          Length = 81035

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 47/52 (90%)
 Strand = Plus / Plus

                                                                
Query: 245  aacttctcttcccagatccggctccacccccacgtcctcctcgtcgtcacca 296
            ||||||||||| |||||||| |||||||| |||||||||||| | |||||||
Sbjct: 3112 aacttctcttctcagatccgtctccaccctcacgtcctcctctttgtcacca 3163
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>gb|AC168054.4| Mus musculus BAC clone RP24-571H12 from chromosome 9, complete
            sequence
          Length = 136974

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 394  ttacagaaattctgagaagtt 414
            |||||||||||||||||||||
Sbjct: 9484 ttacagaaattctgagaagtt 9504
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>dbj|AK129661.1| Homo sapiens cDNA FLJ26150 fis, clone ADG00494
          Length = 1815

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 25  ttcaaaacaaacttcgccaaacttc 49
           |||||||||||||| ||||||||||
Sbjct: 974 ttcaaaacaaacttggccaaacttc 998
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>emb|AL163193.5|HS73E6 Homo sapiens chromosome 9 BAC RP11-73E6, complete sequence
          Length = 175931

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 25    ttcaaaacaaacttcgccaaacttc 49
             |||||||||||||| ||||||||||
Sbjct: 83866 ttcaaaacaaacttggccaaacttc 83842
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>gb|AC173341.1| Mus musculus BAC clone RP24-332P6 from chromosome 9, complete sequence
          Length = 149387

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 394   ttacagaaattctgagaagtt 414
             |||||||||||||||||||||
Sbjct: 96416 ttacagaaattctgagaagtt 96436
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>ref|XM_470393.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 885

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 273 cccacgtcctcctcgtcgtc 292
           ||||||||||||||||||||
Sbjct: 823 cccacgtcctcctcgtcgtc 804
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>gb|AC108394.13| Mus musculus chromosome 1, clone RP24-322K23, complete sequence
          Length = 206294

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 146   ctctttatctccttcctcct 165
             ||||||||||||||||||||
Sbjct: 53366 ctctttatctccttcctcct 53385
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 259     gatccggctccacccccacg 278
               ||||||||||||||||||||
Sbjct: 3181958 gatccggctccacccccacg 3181939
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>gb|AC147082.2| Mus musculus BAC clone RP23-321E5 from chromosome 9, complete sequence
          Length = 202957

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 238   cagggccaacttctcttccc 257
             ||||||||||||||||||||
Sbjct: 14258 cagggccaacttctcttccc 14239
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 273      cccacgtcctcctcgtcgtc 292
                ||||||||||||||||||||
Sbjct: 35215269 cccacgtcctcctcgtcgtc 35215288



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 266     ctccacccccacgtcctcctcgtcgtca 293
               ||||||| |||| |||||||||||||||
Sbjct: 8163041 ctccaccaccacctcctcctcgtcgtca 8163014
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>gb|AC092852.6| Oryza sativa chromosome 3 BAC OSJNBa0032G11 genomic sequence, complete
             sequence
          Length = 156606

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 273   cccacgtcctcctcgtcgtc 292
             ||||||||||||||||||||
Sbjct: 94030 cccacgtcctcctcgtcgtc 94049
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>gb|AY386264.1| Orf virus strain OV-SA00, complete genome
          Length = 139962

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 382    gttaatggttgtttacagaa 401
              ||||||||||||||||||||
Sbjct: 108387 gttaatggttgtttacagaa 108368
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>gb|AC117219.2| Mus musculus BAC clone RP23-344D18 from chromosome 9, complete sequence
          Length = 216199

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 238   cagggccaacttctcttccc 257
             ||||||||||||||||||||
Sbjct: 97043 cagggccaacttctcttccc 97024
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>emb|BX842581.1| Mycobacterium tuberculosis H37Rv complete genome; segment 10/13
          Length = 348676

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 259   gatccggctccacccccacg 278
             ||||||||||||||||||||
Sbjct: 68766 gatccggctccacccccacg 68747
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>dbj|AP007167.1| Aspergillus oryzae RIB40 genomic DNA, SC020
          Length = 1824958

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 274     ccacgtcctcctcgtcgtca 293
               ||||||||||||||||||||
Sbjct: 1275339 ccacgtcctcctcgtcgtca 1275358
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>dbj|AB218617.1| Rattus norvegicus genomic DNA, chromosome 4, clone: CH230-65K18, complete
              sequence
          Length = 193613

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 3      tttctgctctcggttctctg 22
              ||||||||||||||||||||
Sbjct: 130457 tttctgctctcggttctctg 130438
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>gb|AC112640.3| Homo sapiens 3 BAC RP11-817M15 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 211335

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 404   tctgagaagttgctgtctga 423
             ||||||||||||||||||||
Sbjct: 90116 tctgagaagttgctgtctga 90135
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>gb|AF189006.1|AF189006 Mycobacterium tuberculosis Mpt83 (mpt83) gene, partial cds; and DipZ
            (dipZ), Mpt70 (mpt70), and Rv2876 (Rv2876) genes,
            complete cds
          Length = 4160

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 259  gatccggctccacccccacg 278
            ||||||||||||||||||||
Sbjct: 3559 gatccggctccacccccacg 3540
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>gb|DQ184476.1| Orf virus strain NZ2, complete genome
          Length = 137820

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 382    gttaatggttgtttacagaa 401
              ||||||||||||||||||||
Sbjct: 107648 gttaatggttgtttacagaa 107629
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 273      cccacgtcctcctcgtcgtc 292
                ||||||||||||||||||||
Sbjct: 35305341 cccacgtcctcctcgtcgtc 35305360



 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 266     ctccacccccacgtcctcctcgtcgtca 293
               ||||||| |||| |||||||||||||||
Sbjct: 8160876 ctccaccaccacctcctcctcgtcgtca 8160849
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>gb|AC007491.7| Homo sapiens chromosome 16 clone RP11-182C10, complete sequence
          Length = 180888

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 404   tctgagaagttgctgtctga 423
             ||||||||||||||||||||
Sbjct: 87006 tctgagaagttgctgtctga 87025
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>gb|AC017099.11| Homo sapiens BAC clone RP11-542D13 from 2, complete sequence
          Length = 230426

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 16    ttctctgtcttcaaaacaaa 35
             ||||||||||||||||||||
Sbjct: 95840 ttctctgtcttcaaaacaaa 95859
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>gb|AC013272.5| Homo sapiens BAC clone RP11-401C13 from 2, complete sequence
          Length = 172705

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 16     ttctctgtcttcaaaacaaa 35
              ||||||||||||||||||||
Sbjct: 115529 ttctctgtcttcaaaacaaa 115510
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>gb|AC018892.8| Homo sapiens BAC clone RP11-499E14 from 2, complete sequence
          Length = 191055

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    ttctctgtcttcaaaacaaa 35
             ||||||||||||||||||||
Sbjct: 92702 ttctctgtcttcaaaacaaa 92683
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>gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0019J12, complete sequence
          Length = 195583

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 266   ctccacccccacgtcctcctcgtcgtca 293
             ||||||| |||| |||||||||||||||
Sbjct: 94471 ctccaccaccacctcctcctcgtcgtca 94444
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>gb|AC160020.1| Homo sapiens BAC clone RP11-540L21 from 2, complete sequence
          Length = 202084

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    ttctctgtcttcaaaacaaa 35
             ||||||||||||||||||||
Sbjct: 36178 ttctctgtcttcaaaacaaa 36159
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>gb|AC148026.2| Homo sapiens BAC clone RP11-625I24 from 2, complete sequence
          Length = 159856

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 16    ttctctgtcttcaaaacaaa 35
             ||||||||||||||||||||
Sbjct: 63183 ttctctgtcttcaaaacaaa 63164
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>gb|AC099706.8| Mus musculus, clone RP23-267P24, complete sequence
          Length = 168307

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 142   gcacctctttatctccttcctcct 165
             |||| |||||||||||||||||||
Sbjct: 15594 gcacatctttatctccttcctcct 15617
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>ref|XM_574217.1| PREDICTED: Rattus norvegicus similar to short coiled-coil protein
            (LOC498931), mRNA
          Length = 1711

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 392  gtttacagaaattctgagaa 411
            ||||||||||||||||||||
Sbjct: 1409 gtttacagaaattctgagaa 1390
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>dbj|AK101625.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033052M07, full
           insert sequence
          Length = 3187

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 266 ctccacccccacgtcctcctcgtcgtca 293
           ||||||| |||| |||||||||||||||
Sbjct: 212 ctccaccaccacctcctcctcgtcgtca 185
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>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 102    cggcggcctccatgcgccgc 121
              ||||||||||||||||||||
Sbjct: 886762 cggcggcctccatgcgccgc 886743
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>gb|BC076390.1| Rattus norvegicus short coiled-coil protein, mRNA (cDNA clone
            IMAGE:7106066)
          Length = 1739

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 392  gtttacagaaattctgagaa 411
            ||||||||||||||||||||
Sbjct: 1409 gtttacagaaattctgagaa 1390
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>gb|BC086417.1| Rattus norvegicus short coiled-coil protein, mRNA (cDNA clone
            MGC:105643 IMAGE:7127948), complete cds
          Length = 1735

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 392  gtttacagaaattctgagaa 411
            ||||||||||||||||||||
Sbjct: 1409 gtttacagaaattctgagaa 1390
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>gb|AF037625.1|AF037625 Rana catesbeiana dihydropyridine receptor mRNA, complete cds
          Length = 5600

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 268 ccacccccacgtcctcctcg 287
           ||||||||||||||||||||
Sbjct: 369 ccacccccacgtcctcctcg 388
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>ref|NM_001013235.1| Rattus norvegicus short coiled-coil protein (Scoc), mRNA
          Length = 1735

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 392  gtttacagaaattctgagaa 411
            ||||||||||||||||||||
Sbjct: 1409 gtttacagaaattctgagaa 1390
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>emb|AL844221.6| Mouse DNA sequence from clone RP23-445C3 on chromosome X, complete
             sequence
          Length = 188627

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 143   cacctctttatctccttcct 162
             ||||||||||||||||||||
Sbjct: 19426 cacctctttatctccttcct 19407
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>gb|AC166749.6| Mus musculus chromosome 1, clone RP23-463A15, complete sequence
          Length = 186262

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 142   gcacctctttatctccttcctcct 165
             |||| |||||||||||||||||||
Sbjct: 67824 gcacatctttatctccttcctcct 67847
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>emb|AJ298056.1|CFA298056 Crithidia fasciculata partial prp8 gene for putative prp8 homolog
          Length = 645

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 166 cgtcgcgccacagtcaaaggcggc 189
           |||||||||| |||||||||||||
Sbjct: 252 cgtcgcgccaaagtcaaaggcggc 229


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,901,010
Number of Sequences: 3902068
Number of extensions: 3901010
Number of successful extensions: 87174
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86784
Number of HSP's gapped (non-prelim): 390
length of query: 449
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 427
effective length of database: 17,147,199,772
effective search space: 7321854302644
effective search space used: 7321854302644
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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