ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl12a11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY532594.1| Triticum aestivum minichromosomal maintenance fac... 214 7e-53
2gb|AY532593.1| Triticum aestivum minichromosomal maintenance fac... 184 6e-44
3dbj|AK121422.1| Oryza sativa (japonica cultivar-group) cDNA clon... 143 2e-31
4gb|AC131343.4| Oryza sativa (japonica cultivar-group) chromosome... 137 1e-29
5dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 137 1e-29
6gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 137 1e-29
7emb|AJ234640.1|HVU234640 Hordeum vulgare genomic DNA fragment; c... 42 0.57
8dbj|AP006418.1| Lotus japonicus genomic DNA, chromosome 6, clone... 42 0.57
9gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, c... 40 2.3
10gb|AC121858.3| Mus musculus BAC clone RP24-104B23 from chromosom... 40 2.3
11gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 2.3
12dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete ge... 40 2.3
13emb|AL590988.11| Mouse DNA sequence from clone RP23-46C18 on chr... 40 2.3
14gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 38 8.9
15ref|XM_528059.1| PREDICTED: Pan troglodytes myomesin 2 (LOC47268... 38 8.9
16gb|AC135568.3| Oryza sativa (japonica cultivar-group) chromosome... 38 8.9
17gb|DQ440233.1| Aedes aegypti clone AET-272 F0F1-type ATP synthas... 38 8.9
18gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 38 8.9
19gb|AC159631.2| Mus musculus BAC clone RP24-177F21 from chromosom... 38 8.9
20ref|XM_744445.1| Aspergillus fumigatus Af293 hypothetical protei... 38 8.9
21ref|XM_813653.1| Trypanosoma cruzi strain CL Brener hypothetical... 38 8.9
22emb|AL133463.16| Human DNA sequence from clone RP11-149I18 on ch... 38 8.9
23gb|AC135643.2| Oryza sativa (japonica cultivar-group) chromosome... 38 8.9
24emb|Y13905.1|ZMY13905 Zea mays mRNA for anionic peroxidase 38 8.9
25emb|AJ721004.1| Gallus gallus mRNA for hypothetical protein, clo... 38 8.9
26emb|BX936446.8| Zebrafish DNA sequence from clone CH211-52I18 in... 38 8.9
27gb|AC087852.11| Oryza sativa chromosome 3 BAC OJ1124_H03 genomic... 38 8.9
28ref|NM_001006131.1| Gallus gallus dihydroorotate dehydrogenase (... 38 8.9
29gb|AC158382.2| Mus musculus BAC clone RP24-105N17 from chromosom... 38 8.9
30ref|NM_066621.2| Caenorhabditis elegans ZK512.5 (ZK512.5) mRNA, ... 38 8.9
31ref|NM_061042.2| Caenorhabditis elegans INSulin related family m... 38 8.9
32dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 38 8.9
33gb|AC092118.3| Homo sapiens chromosome 16 clone CTD-2600O9, comp... 38 8.9
34emb|BX276103.13| Zebrafish DNA sequence from clone DKEY-7B17, co... 38 8.9
35dbj|AK106957.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 8.9
36dbj|AK071609.1| Oryza sativa (japonica cultivar-group) cDNA clon... 38 8.9
37gb|AY110269.1| Zea mays CL1874_1 mRNA sequence 38 8.9
38emb|Z82082.1|CEZC334 Caenorhabditis elegans Cosmid ZC334, comple... 38 8.9
39gb|AY104668.1| Zea mays PCO098910 mRNA sequence 38 8.9
40gb|U03362.1|HIV1U03362 HIV-1 clone NEF70 Nef (nef), complete cds 38 8.9
41gb|U03359.1|HIV1U03359 HIV-1 clone NEF68 Nef (nef), complete cds 38 8.9
42gb|U03357.1|HIV1U03357 HIV-1 clone NEF66 Nef (nef), complete cds 38 8.9
43gb|U03356.1|HIV1U03356 HIV-1 clone NEF65 Nef (nef), complete cds 38 8.9
44gb|U03355.1|HIV1U03355 HIV-1 clone NEF64 Nef (nef), complete cds 38 8.9
45gb|U03354.1|HIV1U03354 HIV-1 clone NEF63 Nef (nef), complete cds 38 8.9
46gb|AE015451.1| Pseudomonas putida KT2440 complete genome 38 8.9
47emb|Z22177.1|CEZK512 Caenorhabditis elegans Cosmid ZK512, comple... 38 8.9
48emb|BX255949.3| Zebrafish DNA sequence from clone DKEY-76F5 in l... 38 8.9
49dbj|AB016432.1| Gallid herpesvirus 1 genes for protein kinase, g... 38 8.9
50dbj|AB049735.1| Gallid herpesvirus 3 DNA, complete genome, strai... 38 8.9 
>gb|AY532594.1| Triticum aestivum minichromosomal maintenance factor (MCM2) mRNA,
           complete cds
          Length = 2923

 Score =  214 bits (108), Expect = 7e-53
 Identities = 130/136 (95%), Gaps = 1/136 (0%)
 Strand = Plus / Plus

                                                                       
Query: 47  cacgcctcctccacaggacccttctcggagcccgcggatggacgactcggagaacaacgc 106
           ||||| |||||||||||| ||| ||| || ||||||||||||||||||||||||||||||
Sbjct: 4   cacgcgtcctccacaggagcctcctccga-cccgcggatggacgactcggagaacaacgc 62

                                                                       
Query: 107 gccgtcgaccccgggctcgccgggtttcagcaccgaccggctgccgcccaacaccaccac 166
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 63  gccgtcgaccccgggctcgccgggcttcagcaccgaccggctgccgcccaacaccaccac 122

                           
Query: 167 cagccgcggcgccacc 182
           ||||||||||||||||
Sbjct: 123 cagccgcggcgccacc 138
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>gb|AY532593.1| Triticum aestivum minichromosomal maintenance factor (MCM2) gene,
            exons 1 through 18 and complete sequence
          Length = 8809

 Score =  184 bits (93), Expect = 6e-44
 Identities = 96/97 (98%)
 Strand = Plus / Plus

                                                                        
Query: 86   ggacgactcggagaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccgaccg 145
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2395 ggacgactcggagaacaacgcgccgtcgaccccgggctcgccgggcttcagcaccgaccg 2454

                                                 
Query: 146  gctgccgcccaacaccaccaccagccgcggcgccacc 182
            |||||||||||||||||||||||||||||||||||||
Sbjct: 2455 gctgccgcccaacaccaccaccagccgcggcgccacc 2491



 Score = 71.9 bits (36), Expect = 6e-10
 Identities = 72/84 (85%)
 Strand = Plus / Plus

                                                                        
Query: 4    attccccccttcccgccgaaaccctagcctcatctcgccaccgcacgcctcctccacagg 63
            |||||||||||||||||||||||||||||||  | | |  || ||||| |||||||||||
Sbjct: 2199 attccccccttcccgccgaaaccctagcctcggcgcacagccacacgcgtcctccacagg 2258

                                    
Query: 64   acccttctcggagcccgcggatgg 87
            | ||| ||| || |||||||||||
Sbjct: 2259 agcctcctccgaccccgcggatgg 2282
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>dbj|AK121422.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133N01, full
           insert sequence
          Length = 3214

 Score =  143 bits (72), Expect = 2e-31
 Identities = 93/100 (93%)
 Strand = Plus / Plus

                                                                       
Query: 83  gatggacgactcggagaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccga 142
           |||||| |||||||||||||||||||||||||| ||||| |||||||| |||||||| ||
Sbjct: 83  gatggatgactcggagaacaacgcgccgtcgacgccggggtcgccggggttcagcacaga 142

                                                   
Query: 143 ccggctgccgcccaacaccaccaccagccgcggcgccacc 182
           | |||||||||| |||||||||||||||||||||||||||
Sbjct: 143 caggctgccgccgaacaccaccaccagccgcggcgccacc 182
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>gb|AC131343.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0057E15, complete sequence
          Length = 149035

 Score =  137 bits (69), Expect = 1e-29
 Identities = 87/93 (93%)
 Strand = Plus / Plus

                                                                         
Query: 90    gactcggagaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccgaccggctg 149
             |||||||||||||||||||||||||| ||||| |||||||| |||||||| ||| |||||
Sbjct: 97266 gactcggagaacaacgcgccgtcgacgccggggtcgccggggttcagcacagacaggctg 97325

                                              
Query: 150   ccgcccaacaccaccaccagccgcggcgccacc 182
             ||||| |||||||||||||||||||||||||||
Sbjct: 97326 ccgccgaacaccaccaccagccgcggcgccacc 97358
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  137 bits (69), Expect = 1e-29
 Identities = 87/93 (93%)
 Strand = Plus / Plus

                                                                            
Query: 90       gactcggagaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccgaccggctg 149
                |||||||||||||||||||||||||| ||||| |||||||| |||||||| ||| |||||
Sbjct: 16456667 gactcggagaacaacgcgccgtcgacgccggggtcgccggggttcagcacagacaggctg 16456726

                                                 
Query: 150      ccgcccaacaccaccaccagccgcggcgccacc 182
                ||||| |||||||||||||||||||||||||||
Sbjct: 16456727 ccgccgaacaccaccaccagccgcggcgccacc 16456759



 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 104      cgcgccgtcgaccccgggc 122
                |||||||||||||||||||
Sbjct: 26463467 cgcgccgtcgaccccgggc 26463485



 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 152      gcccaacaccaccaccagc 170
                |||||||||||||||||||
Sbjct: 18446509 gcccaacaccaccaccagc 18446527
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  137 bits (69), Expect = 1e-29
 Identities = 87/93 (93%)
 Strand = Plus / Plus

                                                                            
Query: 90       gactcggagaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccgaccggctg 149
                |||||||||||||||||||||||||| ||||| |||||||| |||||||| ||| |||||
Sbjct: 16547671 gactcggagaacaacgcgccgtcgacgccggggtcgccggggttcagcacagacaggctg 16547730

                                                 
Query: 150      ccgcccaacaccaccaccagccgcggcgccacc 182
                ||||| |||||||||||||||||||||||||||
Sbjct: 16547731 ccgccgaacaccaccaccagccgcggcgccacc 16547763



 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 104      cgcgccgtcgaccccgggc 122
                |||||||||||||||||||
Sbjct: 26788731 cgcgccgtcgaccccgggc 26788749



 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                   
Query: 152      gcccaacaccaccaccagc 170
                |||||||||||||||||||
Sbjct: 18605910 gcccaacaccaccaccagc 18605928
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>emb|AJ234640.1|HVU234640 Hordeum vulgare genomic DNA fragment; clone MWG0904.rev
          Length = 416

 Score = 42.1 bits (21), Expect = 0.57
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 158 caccaccaccagccgcggcgccacc 182
           |||||||||||||| ||||||||||
Sbjct: 305 caccaccaccagccacggcgccacc 281
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>dbj|AP006418.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT23A02, TM0306,
             complete sequence
          Length = 62713

 Score = 42.1 bits (21), Expect = 0.57
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 11    ccttcccgccgaaaccctagcctca 35
             |||||||| ||||||||||||||||
Sbjct: 47783 ccttcccgtcgaaaccctagcctca 47807
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>gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, complete sequence
          Length = 1212674

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 157    acaccaccaccagccgcggc 176
              ||||||||||||||||||||
Sbjct: 653840 acaccaccaccagccgcggc 653821
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>gb|AC121858.3| Mus musculus BAC clone RP24-104B23 from chromosome 8, complete sequence
          Length = 177226

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    ctcctccacaggacccttct 71
             ||||||||||||||||||||
Sbjct: 72162 ctcctccacaggacccttct 72181
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 158     caccaccaccagccgcggcg 177
               ||||||||||||||||||||
Sbjct: 1645167 caccaccaccagccgcggcg 1645186
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>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 78      ccgcggatggacgactcgga 97
               ||||||||||||||||||||
Sbjct: 2043809 ccgcggatggacgactcgga 2043828
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>emb|AL590988.11| Mouse DNA sequence from clone RP23-46C18 on chromosome 8, complete
              sequence
          Length = 183975

 Score = 40.1 bits (20), Expect = 2.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 52     ctcctccacaggacccttct 71
              ||||||||||||||||||||
Sbjct: 181578 ctcctccacaggacccttct 181597
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 164    caccagccgcggcgccacc 182
              |||||||||||||||||||
Sbjct: 430243 caccagccgcggcgccacc 430261
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>ref|XM_528059.1| PREDICTED: Pan troglodytes myomesin 2 (LOC472687), mRNA
          Length = 8766

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 149  gccgcccaacaccaccacc 167
            |||||||||||||||||||
Sbjct: 4302 gccgcccaacaccaccacc 4320
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>gb|AC135568.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0078F08, complete sequence
          Length = 165440

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 152   gcccaacaccaccaccagc 170
             |||||||||||||||||||
Sbjct: 25824 gcccaacaccaccaccagc 25842
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>gb|DQ440233.1| Aedes aegypti clone AET-272 F0F1-type ATP synthase beta subunit
           mRNA, complete cds
          Length = 1515

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 128 gggtttcagcaccgaccgg 146
           |||||||||||||||||||
Sbjct: 349 gggtttcagcaccgaccgg 331
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                       
Query: 160      ccaccaccagccgcggcgccacc 182
                |||||||||||||| ||||||||
Sbjct: 30419261 ccaccaccagccgccgcgccacc 30419283
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>gb|AC159631.2| Mus musculus BAC clone RP24-177F21 from chromosome 12, complete sequence
          Length = 171538

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 52     ctcctccacaggacccttc 70
              |||||||||||||||||||
Sbjct: 134349 ctcctccacaggacccttc 134331
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>ref|XM_744445.1| Aspergillus fumigatus Af293 hypothetical protein (Afu2g04060)
           partial mRNA
          Length = 1122

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 98  gaacaacgcgccgtcgaccccgg 120
           |||||||||||||||| ||||||
Sbjct: 145 gaacaacgcgccgtcgtccccgg 167
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>ref|XM_813653.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053506755.60) partial mRNA
          Length = 1578

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 154 ccaacaccaccaccagccg 172
           |||||||||||||||||||
Sbjct: 875 ccaacaccaccaccagccg 857
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>emb|AL133463.16| Human DNA sequence from clone RP11-149I18 on chromosome 20 Contains the
             3' end of C20orf82 gene for a novel protein similar to
             Xenopus Isthmin protein, complete sequence
          Length = 84122

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 60    caggacccttctcggagcc 78
             |||||||||||||||||||
Sbjct: 72496 caggacccttctcggagcc 72478
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>gb|AC135643.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0023F01, complete sequence
          Length = 145009

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 104    cgcgccgtcgaccccgggc 122
              |||||||||||||||||||
Sbjct: 126253 cgcgccgtcgaccccgggc 126235
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>emb|Y13905.1|ZMY13905 Zea mays mRNA for anionic peroxidase
          Length = 1248

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 140 cgaccggctgccgcccaac 158
           |||||||||||||||||||
Sbjct: 710 cgaccggctgccgcccaac 728
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>emb|AJ721004.1| Gallus gallus mRNA for hypothetical protein, clone 32c16
          Length = 1825

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 155 caacaccaccaccagccgc 173
           |||||||||||||||||||
Sbjct: 930 caacaccaccaccagccgc 948
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>emb|BX936446.8| Zebrafish DNA sequence from clone CH211-52I18 in linkage group 5,
            complete sequence
          Length = 21911

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 154  ccaacaccaccaccagccg 172
            |||||||||||||||||||
Sbjct: 4160 ccaacaccaccaccagccg 4178
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>gb|AC087852.11| Oryza sativa chromosome 3 BAC OJ1124_H03 genomic sequence, complete
             sequence
          Length = 149380

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 160   ccaccaccagccgcggcgccacc 182
             |||||||||||||| ||||||||
Sbjct: 57754 ccaccaccagccgccgcgccacc 57732
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>ref|NM_001006131.1| Gallus gallus dihydroorotate dehydrogenase (DHODH), mRNA
          Length = 1825

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 155 caacaccaccaccagccgc 173
           |||||||||||||||||||
Sbjct: 930 caacaccaccaccagccgc 948
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>gb|AC158382.2| Mus musculus BAC clone RP24-105N17 from chromosome 12, complete
             sequence
          Length = 166347

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 52    ctcctccacaggacccttc 70
             |||||||||||||||||||
Sbjct: 61043 ctcctccacaggacccttc 61025
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>ref|NM_066621.2| Caenorhabditis elegans ZK512.5 (ZK512.5) mRNA, complete cds
          Length = 3974

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 154  ccaacaccaccaccagccg 172
            |||||||||||||||||||
Sbjct: 3097 ccaacaccaccaccagccg 3115
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>ref|NM_061042.2| Caenorhabditis elegans INSulin related family member (ins-24)
          (ins-24) mRNA, complete cds
          Length = 397

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 67 cttctcggagcccgcggat 85
          |||||||||||||||||||
Sbjct: 60 cttctcggagcccgcggat 78
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                       
Query: 160      ccaccaccagccgcggcgccacc 182
                |||||||||||||| ||||||||
Sbjct: 30510683 ccaccaccagccgccgcgccacc 30510705
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>gb|AC092118.3| Homo sapiens chromosome 16 clone CTD-2600O9, complete sequence
          Length = 148794

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 119   gggctcgccgggtttcagcaccg 141
             ||||||||||||| |||||||||
Sbjct: 78497 gggctcgccgggtctcagcaccg 78519
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>emb|BX276103.13| Zebrafish DNA sequence from clone DKEY-7B17, complete sequence
          Length = 189322

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 154   ccaacaccaccaccagccg 172
             |||||||||||||||||||
Sbjct: 37356 ccaacaccaccaccagccg 37338
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>dbj|AK106957.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-119-E10, full
           insert sequence
          Length = 2049

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 160 ccaccaccagccgcggcgccacc 182
           |||||||||||||| ||||||||
Sbjct: 209 ccaccaccagccgccgcgccacc 231
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>dbj|AK071609.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023101N02, full
           insert sequence
          Length = 1156

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 160 ccaccaccagccgcggcgccacc 182
           |||||||||||||| ||||||||
Sbjct: 210 ccaccaccagccgccgcgccacc 232
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>gb|AY110269.1| Zea mays CL1874_1 mRNA sequence
          Length = 1321

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 140 cgaccggctgccgcccaac 158
           |||||||||||||||||||
Sbjct: 710 cgaccggctgccgcccaac 728
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>emb|Z82082.1|CEZC334 Caenorhabditis elegans Cosmid ZC334, complete sequence
          Length = 35836

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 67    cttctcggagcccgcggat 85
             |||||||||||||||||||
Sbjct: 25960 cttctcggagcccgcggat 25942
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>gb|AY104668.1| Zea mays PCO098910 mRNA sequence
          Length = 758

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 158 caccaccaccagccgcggcgcca 180
           |||||||||||||||| ||||||
Sbjct: 112 caccaccaccagccgccgcgcca 134
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>gb|U03362.1|HIV1U03362 HIV-1 clone NEF70 Nef (nef), complete cds
          Length = 893

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 82  ggatggacgactcggagaa 100
           |||||||||||||||||||
Sbjct: 584 ggatggacgactcggagaa 602
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>gb|U03359.1|HIV1U03359 HIV-1 clone NEF68 Nef (nef), complete cds
          Length = 890

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 82  ggatggacgactcggagaa 100
           |||||||||||||||||||
Sbjct: 581 ggatggacgactcggagaa 599
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>gb|U03357.1|HIV1U03357 HIV-1 clone NEF66 Nef (nef), complete cds
          Length = 892

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 82  ggatggacgactcggagaa 100
           |||||||||||||||||||
Sbjct: 584 ggatggacgactcggagaa 602
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>gb|U03356.1|HIV1U03356 HIV-1 clone NEF65 Nef (nef), complete cds
          Length = 889

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 82  ggatggacgactcggagaa 100
           |||||||||||||||||||
Sbjct: 581 ggatggacgactcggagaa 599
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>gb|U03355.1|HIV1U03355 HIV-1 clone NEF64 Nef (nef), complete cds
          Length = 890

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 82  ggatggacgactcggagaa 100
           |||||||||||||||||||
Sbjct: 581 ggatggacgactcggagaa 599
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>gb|U03354.1|HIV1U03354 HIV-1 clone NEF63 Nef (nef), complete cds
          Length = 893

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 82  ggatggacgactcggagaa 100
           |||||||||||||||||||
Sbjct: 584 ggatggacgactcggagaa 602
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>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 148     tgccgcccaacaccaccac 166
               |||||||||||||||||||
Sbjct: 3994389 tgccgcccaacaccaccac 3994407
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>emb|Z22177.1|CEZK512 Caenorhabditis elegans Cosmid ZK512, complete sequence
          Length = 36997

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 154   ccaacaccaccaccagccg 172
             |||||||||||||||||||
Sbjct: 17350 ccaacaccaccaccagccg 17368
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>emb|BX255949.3| Zebrafish DNA sequence from clone DKEY-76F5 in linkage group 2,
             complete sequence
          Length = 214484

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 54    cctccacaggacccttctc 72
             |||||||||||||||||||
Sbjct: 32273 cctccacaggacccttctc 32291
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>dbj|AB016432.1| Gallid herpesvirus 1 genes for protein kinase, glycoprotein D,
             glycoprotein I, glycoprotein E and 8 ORFs, complete cds
          Length = 15486

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 150   ccgcccaacaccaccacca 168
             |||||||||||||||||||
Sbjct: 14817 ccgcccaacaccaccacca 14799



 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 150 ccgcccaacaccaccacca 168
           |||||||||||||||||||
Sbjct: 670 ccgcccaacaccaccacca 688
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>dbj|AB049735.1| Gallid herpesvirus 3 DNA, complete genome, strain:HPRS24
          Length = 164270

 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 150    ccgcccaacaccaccacca 168
              |||||||||||||||||||
Sbjct: 155809 ccgcccaacaccaccacca 155791



 Score = 38.2 bits (19), Expect = 8.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 150    ccgcccaacaccaccacca 168
              |||||||||||||||||||
Sbjct: 141662 ccgcccaacaccaccacca 141680


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,294,588
Number of Sequences: 3902068
Number of extensions: 1294588
Number of successful extensions: 105496
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 104558
Number of HSP's gapped (non-prelim): 937
length of query: 182
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 160
effective length of database: 17,147,199,772
effective search space: 2743551963520
effective search space used: 2743551963520
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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