ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl12a09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BGAL_MALDO (P48981) Beta-galactosidase precursor (EC 3.2.1.23) (... 37 0.015
2BGAL_ASPOF (P45582) Beta-galactosidase precursor (EC 3.2.1.23) (... 36 0.034
3BGAL_BRAOL (P49676) Beta-galactosidase precursor (EC 3.2.1.23) (... 35 0.075
4BGAL_LYCES (P48980) Beta-galactosidase precursor (EC 3.2.1.23) (... 34 0.13
5BGAL_DIACA (Q00662) Putative beta-galactosidase precursor (EC 3.... 30 2.4
6TTGH_PSEPU (Q93PU4) Toluene efflux pump membrane transporter ttgH 28 9.2
7SRPB_PSEPU (O31100) Solvent resistant pump membrane transporter ... 28 9.2

>BGAL_MALDO (P48981) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid|
           beta-galactosidase) (Exo-(1-->4)-beta-D-galactanase)
          Length = 731

 Score = 37.4 bits (85), Expect = 0.015
 Identities = 13/27 (48%), Positives = 25/27 (92%)
 Frame = +3

Query: 348 TSAATNVTYDHRALVIDGVRRVLVSGS 428
           ++A+ +V+YDH+A++I+G +R+L+SGS
Sbjct: 20  SAASASVSYDHKAIIINGQKRILISGS 46



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>BGAL_ASPOF (P45582) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase)|
          Length = 832

 Score = 36.2 bits (82), Expect = 0.034
 Identities = 13/26 (50%), Positives = 22/26 (84%)
 Frame = +3

Query: 351 SAATNVTYDHRALVIDGVRRVLVSGS 428
           +   +VTYDH++++I+G RR+L+SGS
Sbjct: 22  AVTASVTYDHKSVIINGQRRILISGS 47



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>BGAL_BRAOL (P49676) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase)|
          Length = 828

 Score = 35.0 bits (79), Expect = 0.075
 Identities = 15/28 (53%), Positives = 23/28 (82%)
 Frame = +3

Query: 345 GTSAATNVTYDHRALVIDGVRRVLVSGS 428
           G++ +T V++D RA+ IDG RR+L+SGS
Sbjct: 20  GSANSTIVSHDERAITIDGQRRILLSGS 47



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>BGAL_LYCES (P48980) Beta-galactosidase precursor (EC 3.2.1.23) (Lactase) (Acid|
           beta-galactosidase) (Exo-(1-->4)-beta-D-galactanase)
          Length = 835

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 11/22 (50%), Positives = 21/22 (95%)
 Frame = +3

Query: 363 NVTYDHRALVIDGVRRVLVSGS 428
           +V+YDH+A++++G R++L+SGS
Sbjct: 23  SVSYDHKAIIVNGQRKILISGS 44



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>BGAL_DIACA (Q00662) Putative beta-galactosidase precursor (EC 3.2.1.23)|
           (Lactase) (SR12 protein)
          Length = 731

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 13/22 (59%), Positives = 18/22 (81%)
 Frame = +3

Query: 363 NVTYDHRALVIDGVRRVLVSGS 428
           NV YD+RA+ I+  RR+L+SGS
Sbjct: 30  NVWYDYRAIKINDQRRILLSGS 51



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>TTGH_PSEPU (Q93PU4) Toluene efflux pump membrane transporter ttgH|
          Length = 1049

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -1

Query: 270 RSPEKKQRQGLHLVRGMMAFGVLAELVAR 184
           R PE+ QRQGL +V+  M F ++  LV R
Sbjct: 117 RLPEEVQRQGLRVVKYQMNFFLVMSLVDR 145



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>SRPB_PSEPU (O31100) Solvent resistant pump membrane transporter srpB|
          Length = 1049

 Score = 28.1 bits (61), Expect = 9.2
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -1

Query: 270 RSPEKKQRQGLHLVRGMMAFGVLAELVAR 184
           R PE+ QRQGL +V+  M F ++  LV R
Sbjct: 117 RLPEEVQRQGLRVVKYQMNFFLVMSLVDR 145


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,730,197
Number of Sequences: 219361
Number of extensions: 339380
Number of successful extensions: 994
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 994
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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