ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl12a09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 109 bits (55), Expect = 7e-21 Identities = 64/67 (95%) Strand = Plus / Minus Query: 363 aacgtgacgtacgaccaccgcgcgctggtcatcgacggcgtgcgccgcgtgctcgtctcc 422 |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct: 8172540 aacgtgacgtacgaccaccgcgcggtggtcatcgacggcgtgcgacgcgtgctcgtctcc 8172481 Query: 423 ggctcca 429 || |||| Sbjct: 8172480 gggtcca 8172474 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 392 catcgacggcgtgcgccgcgtgctcgtct 420 ||||| ||||| ||||||||||||||||| Sbjct: 31880370 catcgccggcgcgcgccgcgtgctcgtct 31880342
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 109 bits (55), Expect = 7e-21 Identities = 64/67 (95%) Strand = Plus / Minus Query: 363 aacgtgacgtacgaccaccgcgcgctggtcatcgacggcgtgcgccgcgtgctcgtctcc 422 |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct: 8170375 aacgtgacgtacgaccaccgcgcggtggtcatcgacggcgtgcgacgcgtgctcgtctcc 8170316 Query: 423 ggctcca 429 || |||| Sbjct: 8170315 gggtcca 8170309 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 392 catcgacggcgtgcgccgcgtgctcgtct 420 ||||| ||||| ||||||||||||||||| Sbjct: 31970886 catcgccggcgcgcgccgcgtgctcgtct 31970858
>gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0019J12, complete sequence Length = 195583 Score = 109 bits (55), Expect = 7e-21 Identities = 64/67 (95%) Strand = Plus / Minus Query: 363 aacgtgacgtacgaccaccgcgcgctggtcatcgacggcgtgcgccgcgtgctcgtctcc 422 |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct: 103970 aacgtgacgtacgaccaccgcgcggtggtcatcgacggcgtgcgacgcgtgctcgtctcc 103911 Query: 423 ggctcca 429 || |||| Sbjct: 103910 gggtcca 103904
>dbj|AK067479.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013107M10, full insert sequence Length = 3250 Score = 109 bits (55), Expect = 7e-21 Identities = 64/67 (95%) Strand = Plus / Plus Query: 363 aacgtgacgtacgaccaccgcgcgctggtcatcgacggcgtgcgccgcgtgctcgtctcc 422 |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct: 396 aacgtgacgtacgaccaccgcgcggtggtcatcgacggcgtgcgacgcgtgctcgtctcc 455 Query: 423 ggctcca 429 || |||| Sbjct: 456 gggtcca 462
>dbj|AK119809.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-176-H02, full insert sequence Length = 3078 Score = 101 bits (51), Expect = 2e-18 Identities = 63/67 (94%) Strand = Plus / Plus Query: 363 aacgtgacgtacgaccaccgcgcgctggtcatcgacggcgtgcgccgcgtgctcgtctcc 422 ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| Sbjct: 2428 aacgtgacgtacgaccaccgcgctgtggtcatcgacggcgtgcgacgcgtgctcgtctcc 2487 Query: 423 ggctcca 429 || |||| Sbjct: 2488 gggtcca 2494
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 362 caacgtgacgtacgaccaccgcgcgctggtcatcg 396 ||||||||||||||||||||||||| || |||||| Sbjct: 13826415 caacgtgacgtacgaccaccgcgcggtgctcatcg 13826381
>dbj|AK065546.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013031G01, full insert sequence Length = 3036 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 362 caacgtgacgtacgaccaccgcgcgctggtcatcg 396 ||||||||||||||||||||||||| || |||||| Sbjct: 280 caacgtgacgtacgaccaccgcgcggtgctcatcg 314
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 362 caacgtgacgtacgaccaccgcgcgctggtcatcg 396 ||||||||||||||||||||||||| || |||||| Sbjct: 13780695 caacgtgacgtacgaccaccgcgcggtgctcatcg 13780661
>emb|BX664709.2|CNS09SBZ Oryza sativa chromosome 12, . BAC B1270G11 of chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155451 Score = 54.0 bits (27), Expect = 4e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 362 caacgtgacgtacgaccaccgcgcgctggtcatcg 396 ||||||||||||||||||||||||| || |||||| Sbjct: 142074 caacgtgacgtacgaccaccgcgcggtgctcatcg 142040
>dbj|AB086425.1| Pyrus communis PcGAL3 mRNA for pear beta-galactosidase3, complete cds Length = 3085 Score = 48.1 bits (24), Expect = 0.024 Identities = 45/52 (86%) Strand = Plus / Plus Query: 372 tacgaccaccgcgcgctggtcatcgacggcgtgcgccgcgtgctcgtctccg 423 ||||||||||| || || ||||||||||| ||||||| |||||||||||| Sbjct: 180 tacgaccaccgagctctaatcatcgacggcaagcgccgcatgctcgtctccg 231
>dbj|AB190363.1| Pyrus pyrifolia PpGAL2 mRNA for beta-D-galactosidase, complete cds Length = 3079 Score = 48.1 bits (24), Expect = 0.024 Identities = 45/52 (86%) Strand = Plus / Plus Query: 372 tacgaccaccgcgcgctggtcatcgacggcgtgcgccgcgtgctcgtctccg 423 ||||||||||| || || ||||||||||| ||||||| |||||||||||| Sbjct: 168 tacgaccaccgagctctaatcatcgacggcaagcgccgcatgctcgtctccg 219
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 48.1 bits (24), Expect = 0.024 Identities = 24/24 (100%) Strand = Plus / Minus Query: 305 cgcggcggcggccctgctgctcgc 328 |||||||||||||||||||||||| Sbjct: 3806828 cgcggcggcggccctgctgctcgc 3806805
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 381 cgcgcgctggtcatcgacggcg 402 |||||||||||||||||||||| Sbjct: 4040440 cgcgcgctggtcatcgacggcg 4040419
>ref|XM_542189.2| PREDICTED: Canis familiaris similar to signal peptide peptidase-like 2B isoform 2 (LOC485071), mRNA Length = 2643 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Plus Query: 318 ctgctgctcgcgctgctctgcctggc 343 ||||||||||| |||||||||||||| Sbjct: 1276 ctgctgctcgcactgctctgcctggc 1301
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 44.1 bits (22), Expect = 0.37 Identities = 28/30 (93%) Strand = Plus / Minus Query: 268 gcgacaaagcaatggcggccgtcggcaggc 297 ||||||| ||||||||||||| |||||||| Sbjct: 6229396 gcgacaaggcaatggcggccgccggcaggc 6229367
>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence Length = 2648638 Score = 44.1 bits (22), Expect = 0.37 Identities = 28/30 (93%) Strand = Plus / Plus Query: 306 gcggcggcggccctgctgctcgcgctgctc 335 |||||||||| | ||||||||||||||||| Sbjct: 2066216 gcggcggcgggcgtgctgctcgcgctgctc 2066245
>ref|NM_184908.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1401 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Plus Query: 392 catcgacggcgtgcgccgcgtgctcgtct 420 ||||| ||||| ||||||||||||||||| Sbjct: 504 catcgccggcgcgcgccgcgtgctcgtct 532
>ref|NM_197900.1| Oryza sativa (japonica cultivar-group) putative cellulose synthase (OSJNBa0035H01.10), mRNA Length = 3384 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 143 ctccagctgctgctcgtcgcc 163 ||||||||||||||||||||| Sbjct: 1509 ctccagctgctgctcgtcgcc 1489
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 395 cgacggcgtgcgccgcgtgct 415 ||||||||||||||||||||| Sbjct: 2877171 cgacggcgtgcgccgcgtgct 2877191
>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome Length = 5650368 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 311 ggcggccctgctgctcgcgct 331 ||||||||||||||||||||| Sbjct: 5318653 ggcggccctgctgctcgcgct 5318633
>ref|XM_532375.2| PREDICTED: Canis familiaris similar to TPA regulated locus (LOC475144), mRNA Length = 1509 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 317 cctgctgctcgcgctgctctg 337 ||||||||||||||||||||| Sbjct: 60 cctgctgctcgcgctgctctg 80
>gb|AC027037.6| Oryza sativa chromosome 10 BAC OSJNBa0035H01 genomic sequence, complete sequence Length = 64582 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 143 ctccagctgctgctcgtcgcc 163 ||||||||||||||||||||| Sbjct: 59300 ctccagctgctgctcgtcgcc 59280
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 313 cggccctgctgctcgcgctgctctg 337 ||||| ||||||||||||||||||| Sbjct: 228771 cggccatgctgctcgcgctgctctg 228747
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 395 cgacggcgtgcgccgcgtgct 415 ||||||||||||||||||||| Sbjct: 1055697 cgacggcgtgcgccgcgtgct 1055717
>emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete genome; segment 11/29 Length = 313800 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 309 gcggcggccctgctgctcgcg 329 ||||||||||||||||||||| Sbjct: 66011 gcggcggccctgctgctcgcg 65991
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 298 tgccgagcgcggcggcggccc 318 ||||||||||||||||||||| Sbjct: 4118766 tgccgagcgcggcggcggccc 4118786 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 cggggacgtcggcggcgacc 362 |||||||||||||||||||| Sbjct: 5397202 cggggacgtcggcggcgacc 5397183
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 395 cgacggcgtgcgccgcgtgct 415 ||||||||||||||||||||| Sbjct: 649489 cgacggcgtgcgccgcgtgct 649509
>tpg|BK000089.1| TPA: TPA_exp: Oryza sativa (japonica cultivar-group) cellulose synthase-like D1 gene, complete cds Length = 4188 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 143 ctccagctgctgctcgtcgcc 163 ||||||||||||||||||||| Sbjct: 1778 ctccagctgctgctcgtcgcc 1758
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 143 ctccagctgctgctcgtcgcc 163 ||||||||||||||||||||| Sbjct: 22543582 ctccagctgctgctcgtcgcc 22543562
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 143 ctccagctgctgctcgtcgcc 163 ||||||||||||||||||||| Sbjct: 22556050 ctccagctgctgctcgtcgcc 22556030
>gb|AC091494.9| Oryza sativa chromosome 3 BAC OSJNBa0070N04 genomic sequence, complete sequence Length = 150663 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 392 catcgacggcgtgcgccgcgtgctcgtct 420 ||||| ||||| ||||||||||||||||| Sbjct: 81623 catcgccggcgcgcgccgcgtgctcgtct 81595
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 306 gcggcggcggccctgctgct 325 |||||||||||||||||||| Sbjct: 556863 gcggcggcggccctgctgct 556882
>gb|DQ213916.1| Taeniopygia guttata clone 0058P0058F05 macrophage migration inhibitory factor (MIF) variant 1-like mRNA, complete sequence Length = 1030 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 303 agcgcggcggcggccctgctgctc 326 |||||||||||||||| ||||||| Sbjct: 29 agcgcggcggcggccccgctgctc 52
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 gccgagcgcggcggcggccc 318 |||||||||||||||||||| Sbjct: 1535263 gccgagcgcggcggcggccc 1535244
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 292 gcaggctgccgagcgcggcg 311 |||||||||||||||||||| Sbjct: 2146268 gcaggctgccgagcgcggcg 2146249
>ref|XM_530663.1| PREDICTED: Pan troglodytes LOC460813 (LOC460813), mRNA Length = 1057 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 315 gccctgctgctcgcgctgct 334 |||||||||||||||||||| Sbjct: 501 gccctgctgctcgcgctgct 482
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 394 tcgacggcgtgcgccgcgtgctcg 417 ||||||||| |||||||||||||| Sbjct: 2867905 tcgacggcgggcgccgcgtgctcg 2867882
>gb|AC095018.2| Drosophila melanogaster clone BACR24L18, complete sequence Length = 163116 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 409 gcgtgctcgtctccggctcc 428 |||||||||||||||||||| Sbjct: 16918 gcgtgctcgtctccggctcc 16899
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 394 tcgacggcgtgcgccgcgtgctcg 417 ||||||||| |||||||||||||| Sbjct: 240579 tcgacggcgggcgccgcgtgctcg 240602
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 313 cggccctgctgctcgcgctg 332 |||||||||||||||||||| Sbjct: 2534797 cggccctgctgctcgcgctg 2534816 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 401 cgtgcgccgcgtgctcgtctccgg 424 ||||||||||||||||||| |||| Sbjct: 629266 cgtgcgccgcgtgctcgtcgccgg 629289
>gb|AC026887.9| Homo sapiens chromosome 10 clone RP11-544P1, complete sequence Length = 187495 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 314 ggccctgctgctcgcgctgctctg 337 |||||||||||||| ||||||||| Sbjct: 133930 ggccctgctgctcgggctgctctg 133907
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence Length = 3806533 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 389 ggtcatcgacggcgtgcgcc 408 |||||||||||||||||||| Sbjct: 528503 ggtcatcgacggcgtgcgcc 528484
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 394 tcgacggcgtgcgccgcgtgctcg 417 ||||||||| |||||||||||||| Sbjct: 17799 tcgacggcgggcgccgcgtgctcg 17822
>emb|AL939117.1|SCO939117 Streptomyces coelicolor A3(2) complete genome; segment 14/29 Length = 309050 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 374 cgaccaccgcgcgctggtcatcga 397 ||||||||||||||||||| |||| Sbjct: 247788 cgaccaccgcgcgctggtcgtcga 247811
>gb|AY098636.1| Mus musculus testhymin mRNA, complete cds Length = 6258 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 ctgccgagcgcggcggcggc 316 |||||||||||||||||||| Sbjct: 590 ctgccgagcgcggcggcggc 571
>gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome Length = 230138 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 343 cggggacgtcggcggcgacc 362 |||||||||||||||||||| Sbjct: 6117 cggggacgtcggcggcgacc 6098
>gb|AC091636.1|AC091636 Drosophila melanogaster, chromosome 3R, region 89E-89E, BAC clone BACR03M20, complete sequence Length = 175335 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 409 gcgtgctcgtctccggctcc 428 |||||||||||||||||||| Sbjct: 45567 gcgtgctcgtctccggctcc 45586
>gb|AY641455.1| Burkholderia glumae DNA binding protein (toxJ), putative transposase, putative outer membrane protein OprM precursor (toxI), probable RND efflux transporter (toxH), probable RND efflux membrane-fusion protein precursor (toxG), hypothetical protein (toxF), LysR type regulatory protein (toxR), putative ubiquinone/menaquinone biosynthesis methyltransferase (toxA), putative GTP cyclohydrolase II (toxB), WD repeat portein (toxC), hypothetical protein (toxD), putative deaminase (toxE), and putative transposase genes, complete cds Length = 16987 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 gcggcggccctgctgctcgc 328 |||||||||||||||||||| Sbjct: 3749 gcggcggccctgctgctcgc 3730
>gb|AC156290.10| Mus musculus 6 BAC RP24-267I24 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 144883 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 ctgccgagcgcggcggcggc 316 |||||||||||||||||||| Sbjct: 31445 ctgccgagcgcggcggcggc 31426
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 gcggcggccctgctgctcgc 328 |||||||||||||||||||| Sbjct: 72763 gcggcggccctgctgctcgc 72744
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 398 cggcgtgcgccgcgtgctcg 417 |||||||||||||||||||| Sbjct: 361626 cggcgtgcgccgcgtgctcg 361607
>ref|XM_575380.1| PREDICTED: Rattus norvegicus similar to testhymin (LOC500026), mRNA Length = 2369 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 ctgccgagcgcggcggcggc 316 |||||||||||||||||||| Sbjct: 212 ctgccgagcgcggcggcggc 193
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 340 tggcggggacgtcggcggcg 359 |||||||||||||||||||| Sbjct: 4413242 tggcggggacgtcggcggcg 4413261
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 tgccgagcgcggcggcggcc 317 |||||||||||||||||||| Sbjct: 749571 tgccgagcgcggcggcggcc 749590
>gb|AF110185.1|AF110185 Burkholderia pseudomallei strain 1026b DbhB (dbhB), general secretory pathway protein D (gspD), general secretory pathway protein E (gspE), general secretory pathway protein F (gspF), GspC (gspC), general secretory pathway protein G (gspG), general secretory pathway protein H (gspH), general secretory pathway protein I (gspI), general secretory pathway protein J (gspJ), general secretory pathway protein K (gspK), general secretory pathway protein L (gspL), general secretory pathway protein M (gspM), and general secretory pathway protein N (gspN) genes, complete cds; and unknown genes Length = 20302 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 394 tcgacggcgtgcgccgcgtgctcg 417 ||||||||| |||||||||||||| Sbjct: 13008 tcgacggcgggcgccgcgtgctcg 13031
>gb|AE003715.4| Drosophila melanogaster chromosome 3R, section 53 of 118 of the complete sequence Length = 228547 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 409 gcgtgctcgtctccggctcc 428 |||||||||||||||||||| Sbjct: 140776 gcgtgctcgtctccggctcc 140795
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 394 tcgacggcgtgcgccgcgtgctcg 417 ||||||||| |||||||||||||| Sbjct: 17735 tcgacggcgggcgccgcgtgctcg 17758
>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome Length = 3551823 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 309 gcggcggccctgctgctcgc 328 |||||||||||||||||||| Sbjct: 3137752 gcggcggccctgctgctcgc 3137733
>gb|U31961.1|DMU31961 Drosophila melanogaster bithorax complex (BX-C), complete sequence Length = 338234 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 409 gcgtgctcgtctccggctcc 428 |||||||||||||||||||| Sbjct: 42942 gcgtgctcgtctccggctcc 42923
>gb|L07835.1|DROABDB Drosophila melanogaster (clone DS07696) Abd-B gene Length = 80423 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 409 gcgtgctcgtctccggctcc 428 |||||||||||||||||||| Sbjct: 42942 gcgtgctcgtctccggctcc 42923
>gb|AC090053.5| Leishmania major strain Friedlin chromosome Unknown clone P323, complete sequence Length = 66637 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 315 gccctgctgctcgcgctgct 334 |||||||||||||||||||| Sbjct: 25565 gccctgctgctcgcgctgct 25584 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,953,041 Number of Sequences: 3902068 Number of extensions: 2953041 Number of successful extensions: 63067 Number of sequences better than 10.0: 61 Number of HSP's better than 10.0 without gapping: 64 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58066 Number of HSP's gapped (non-prelim): 5000 length of query: 429 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 407 effective length of database: 17,147,199,772 effective search space: 6978910307204 effective search space used: 6978910307204 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
