ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl12a08 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_469360.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3534 Score = 46.1 bits (23), Expect = 0.051 Identities = 32/35 (91%) Strand = Plus / Plus Query: 205 agagcgggagcggaaactgaagaaagagcagaagg 239 ||||| ||||||||| ||||||||||| ||||||| Sbjct: 48 agagctggagcggaagctgaagaaagatcagaagg 82
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 46.1 bits (23), Expect = 0.051 Identities = 32/35 (91%) Strand = Plus / Plus Query: 205 agagcgggagcggaaactgaagaaagagcagaagg 239 ||||| ||||||||| ||||||||||| ||||||| Sbjct: 27535917 agagctggagcggaagctgaagaaagatcagaagg 27535951
>gb|AC137998.2| Oryza sativa chromosome 3 BAC OSJNBa0010B01 genomic sequence, complete sequence Length = 27470 Score = 46.1 bits (23), Expect = 0.051 Identities = 32/35 (91%) Strand = Plus / Minus Query: 205 agagcgggagcggaaactgaagaaagagcagaagg 239 ||||| ||||||||| ||||||||||| ||||||| Sbjct: 26857 agagctggagcggaagctgaagaaagatcagaagg 26823
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 46.1 bits (23), Expect = 0.051 Identities = 32/35 (91%) Strand = Plus / Plus Query: 205 agagcgggagcggaaactgaagaaagagcagaagg 239 ||||| ||||||||| ||||||||||| ||||||| Sbjct: 27627240 agagctggagcggaagctgaagaaagatcagaagg 27627274
>gb|AC120508.3| Oryza sativa chromosome 3 BAC OSJNBb0021O11 genomic sequence, complete sequence Length = 123406 Score = 46.1 bits (23), Expect = 0.051 Identities = 32/35 (91%) Strand = Plus / Minus Query: 205 agagcgggagcggaaactgaagaaagagcagaagg 239 ||||| ||||||||| ||||||||||| ||||||| Sbjct: 14597 agagctggagcggaagctgaagaaagatcagaagg 14563
>dbj|AK121157.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079F18, full insert sequence Length = 3587 Score = 46.1 bits (23), Expect = 0.051 Identities = 32/35 (91%) Strand = Plus / Plus Query: 205 agagcgggagcggaaactgaagaaagagcagaagg 239 ||||| ||||||||| ||||||||||| ||||||| Sbjct: 261 agagctggagcggaagctgaagaaagatcagaagg 295
>gb|AC108072.3| Homo sapiens BAC clone RP11-704A16 from 2, complete sequence Length = 36787 Score = 44.1 bits (22), Expect = 0.20 Identities = 22/22 (100%) Strand = Plus / Minus Query: 217 gaaactgaagaaagagcagaag 238 |||||||||||||||||||||| Sbjct: 33637 gaaactgaagaaagagcagaag 33616
>ref|XM_420603.1| PREDICTED: Gallus gallus similar to sodium bicarbonate cotransporter (LOC422649), mRNA Length = 4408 Score = 42.1 bits (21), Expect = 0.80 Identities = 24/25 (96%) Strand = Plus / Plus Query: 154 ggagaaggcggcgtcagaggagaag 178 |||||||||||||||| |||||||| Sbjct: 120 ggagaaggcggcgtcataggagaag 144
>gb|AC069419.20| Homo sapiens 3 BAC RP11-11D18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 61415 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 28 tgtcagggacactctgctctc 48 ||||||||||||||||||||| Sbjct: 55239 tgtcagggacactctgctctc 55219
>gb|AC154210.2| Mus musculus BAC clone RP24-113C3 from chromosome 13, complete sequence Length = 193176 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 119 tctctcaccatggagaagccc 139 ||||||||||||||||||||| Sbjct: 177775 tctctcaccatggagaagccc 177755
>gb|AF380344.1|AF380343S2 Homo sapiens pontin 52 (RUVBL1) gene, exons 2 through 11, and complete cds Length = 40881 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 28 tgtcagggacactctgctctc 48 ||||||||||||||||||||| Sbjct: 36705 tgtcagggacactctgctctc 36685
>gb|AC154748.2| Mus musculus BAC clone RP23-116P6 from chromosome 13, complete sequence Length = 203908 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 tctctcaccatggagaagccc 139 ||||||||||||||||||||| Sbjct: 193131 tctctcaccatggagaagccc 193151
>gb|AE004522.1| Pseudomonas aeruginosa PAO1, section 83 of 529 of the complete genome Length = 15724 Score = 42.1 bits (21), Expect = 0.80 Identities = 27/29 (93%) Strand = Plus / Minus Query: 72 aagcgccggcgcgcggccccggcggcgcg 100 ||||||||||||||||| |||||||||| Sbjct: 14294 aagcgccggcgcgcggcggcggcggcgcg 14266
>emb|BX647488.1|HSM807634 Homo sapiens mRNA; cDNA DKFZp686C14128 (from clone DKFZp686C14128) Length = 4094 Score = 42.1 bits (21), Expect = 0.80 Identities = 21/21 (100%) Strand = Plus / Minus Query: 28 tgtcagggacactctgctctc 48 ||||||||||||||||||||| Sbjct: 446 tgtcagggacactctgctctc 426
>ref|NM_188119.1| Oryza sativa (japonica cultivar-group), Ozsa8551 predicted mRNA Length = 2388 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 cggcgcgcggccccggcggc 97 |||||||||||||||||||| Sbjct: 1541 cggcgcgcggccccggcggc 1560
>ref|XM_477896.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3628 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 gaaactgaagaaagagcaga 236 |||||||||||||||||||| Sbjct: 2824 gaaactgaagaaagagcaga 2843
>gb|BC058111.1| Mus musculus zinc fingers and homeoboxes 3, mRNA (cDNA clone MGC:67301 IMAGE:6836697), complete cds Length = 4499 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 ctgtcagggacactctgctc 46 |||||||||||||||||||| Sbjct: 929 ctgtcagggacactctgctc 910
>gb|AY576796.1| Actinoplanes phage phiAsp2, complete genome Length = 58638 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 gcggccccggcggcgcgacc 103 |||||||||||||||||||| Sbjct: 9817 gcggccccggcggcgcgacc 9836
>ref|NM_177263.3| Mus musculus zinc fingers and homeoboxes 3 (Zhx3), mRNA Length = 4499 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 ctgtcagggacactctgctc 46 |||||||||||||||||||| Sbjct: 929 ctgtcagggacactctgctc 910
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 gcgcgcggccccggcggcgc 99 |||||||||||||||||||| Sbjct: 48421 gcgcgcggccccggcggcgc 48440
>gb|AC145970.2| Pan troglodytes BAC clone RP43-17L12 from 7, complete sequence Length = 182677 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 cggcgcgcggccccggcggc 97 |||||||||||||||||||| Sbjct: 10351 cggcgcgcggccccggcggc 10332
>ref|XM_754826.1| Ustilago maydis 521 hypothetical protein (UM03772.1) partial mRNA Length = 1662 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 176 aagctgcttgacgacaagga 195 |||||||||||||||||||| Sbjct: 1393 aagctgcttgacgacaagga 1412
>emb|AJ004801.1|BHV1CGEN Bovine herpesvirus type 1.1 complete genome Length = 135301 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 gcgcgcggccccggcggcgc 99 |||||||||||||||||||| Sbjct: 132301 gcgcgcggccccggcggcgc 132320 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 80 gcgcgcggccccggcggcgc 99 |||||||||||||||||||| Sbjct: 105917 gcgcgcggccccggcggcgc 105898
>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome Length = 4892717 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 gcggccccggcggcgcgacc 103 |||||||||||||||||||| Sbjct: 90997 gcggccccggcggcgcgacc 91016
>emb|AL161450.14| Human DNA sequence from clone RP11-39K24 on chromosome 9 Contains the 3' end of the JAK2 gene for Janus kinase 2 (a protein tyrosine kinase), a casein kinase pseudogene, a trans-prenyltransferase (TPT) pseudogene, a NADH dehydrogenase 6 (MTND6) pseuodgene, a NADH dehydrogenase 1 (MTND1) pseudogene, a cytochrome c oxidase I (MTCO1) pseudogene, a cytochrome c oxidase II (MTCO2) pseudogene, an ATP synthase 6 (MTATP6) pseudogene, a cytochrome c oxidase III (MTCO3) pseudogene, a NADH dehydrogenase 4 (MTND4)pseudogene, a pseudogene similar to part of NADH dehydrogenase 5 (MTND5), a transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47) (TCF3) pseudogene, an immunoglobulin heavy constant epsilon pseudogene 2 (IGHEP2), a novel gene, the INSL6 gene for insulin-like 6 (RIF1) and 4 CpG islands, complete sequence Length = 171146 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 cggcgcgcggccccggcggc 97 |||||||||||||||||||| Sbjct: 67411 cggcgcgcggccccggcggc 67430
>emb|AL939123.1|SCO939123 Streptomyces coelicolor A3(2) complete genome; segment 20/29 Length = 300100 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 ggccccggcggcgcgaccac 105 |||||||||||||||||||| Sbjct: 138762 ggccccggcggcgcgaccac 138743
>gb|AC105129.4| Homo sapiens chromosome 15, clone RP11-349G13, complete sequence Length = 198295 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 188 gacaaggagctagagctaga 207 |||||||||||||||||||| Sbjct: 124623 gacaaggagctagagctaga 124642
>dbj|AK143296.1| Mus musculus 2 days pregnant adult female oviduct cDNA, RIKEN full-length enriched library, clone:E230037F05 product:zinc fingers and homeoboxes 3, full insert sequence Length = 4462 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 ctgtcagggacactctgctc 46 |||||||||||||||||||| Sbjct: 910 ctgtcagggacactctgctc 891
>dbj|AK147259.1| Mus musculus cDNA, RIKEN full-length enriched library, clone:M5C1003G16 product:zinc fingers and homeoboxes 3, full insert sequence Length = 9067 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 ctgtcagggacactctgctc 46 |||||||||||||||||||| Sbjct: 751 ctgtcagggacactctgctc 732
>dbj|AK029603.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4930412E20 product:DJ511B24.3 (KIAA0395 (PROBABLE HOMEOBOX PROTEIN)) homolog [Homo sapiens], full insert sequence Length = 3352 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 ctgtcagggacactctgctc 46 |||||||||||||||||||| Sbjct: 801 ctgtcagggacactctgctc 782
>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence Length = 2325379 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 cgccggcgcgcggccccggc 94 |||||||||||||||||||| Sbjct: 714139 cgccggcgcgcggccccggc 714158
>dbj|AK030057.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched library, clone:4932418O04 product:DJ511B24.3 (KIAA0395 (PROBABLE HOMEOBOX PROTEIN)) homolog [Homo sapiens], full insert sequence Length = 3611 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 ctgtcagggacactctgctc 46 |||||||||||||||||||| Sbjct: 894 ctgtcagggacactctgctc 875
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 cggcgcgcggccccggcggc 97 |||||||||||||||||||| Sbjct: 9864336 cggcgcgcggccccggcggc 9864355
>dbj|AB099703.2| Mus musculus ZHX3 gene for transcription factor ZHX3, complete cds Length = 13008 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 ctgtcagggacactctgctc 46 |||||||||||||||||||| Sbjct: 1998 ctgtcagggacactctgctc 1979
>gb|AC026329.14| Homo sapiens 3 BAC RP11-325J6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 117404 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 220 actgaagaaagagcagaagg 239 |||||||||||||||||||| Sbjct: 58737 actgaagaaagagcagaagg 58756
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 87 gccccggcggcgcgaccacc 106 |||||||||||||||||||| Sbjct: 3240672 gccccggcggcgcgaccacc 3240691
>dbj|AP001072.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0025D05 Length = 145684 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 cggcgcgcggccccggcggc 97 |||||||||||||||||||| Sbjct: 128586 cggcgcgcggccccggcggc 128605
>dbj|AP000815.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0003H10 Length = 142418 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 78 cggcgcgcggccccggcggc 97 |||||||||||||||||||| Sbjct: 102 cggcgcgcggccccggcggc 121
>emb|BX649518.6| Zebrafish DNA sequence from clone CH211-162I8 in linkage group 4, complete sequence Length = 182631 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 gaaactgaagaaagagcaga 236 |||||||||||||||||||| Sbjct: 139643 gaaactgaagaaagagcaga 139624
>dbj|AB099527.2| Mus musculus mRNA for transcription factor ZHX3, complete cds Length = 2856 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 ctgtcagggacactctgctc 46 |||||||||||||||||||| Sbjct: 473 ctgtcagggacactctgctc 454
>dbj|AK074000.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033073D02, full insert sequence Length = 3630 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 gaaactgaagaaagagcaga 236 |||||||||||||||||||| Sbjct: 2827 gaaactgaagaaagagcaga 2846
>dbj|AP000478.6| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-14E22, complete sequence Length = 121689 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 192 aggagctagagctagagcgggagc 215 |||||||||||||||||| ||||| Sbjct: 48973 aggagctagagctagagcaggagc 48996
>dbj|AP001978.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-258O13, complete sequence Length = 161602 Score = 40.1 bits (20), Expect = 3.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 192 aggagctagagctagagcgggagc 215 |||||||||||||||||| ||||| Sbjct: 153278 aggagctagagctagagcaggagc 153301
>gb|DQ317973.1| Mus musculus zinc fingers and homeoboxes 3 (Zhx3) mRNA, complete cds Length = 2856 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 ctgtcagggacactctgctc 46 |||||||||||||||||||| Sbjct: 473 ctgtcagggacactctgctc 454
>emb|AL590389.8| Mouse DNA sequence from clone RP23-393F23 on chromosome 2, complete sequence Length = 207901 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 27 ctgtcagggacactctgctc 46 |||||||||||||||||||| Sbjct: 51687 ctgtcagggacactctgctc 51706
>gb|L14320.1|HSBBICP4A Bovine herpesvirus type 1 early-intermediate transcription control protein (BICP4) gene, complete cds Length = 8113 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 gcgcgcggccccggcggcgc 99 |||||||||||||||||||| Sbjct: 5114 gcgcgcggccccggcggcgc 5133
>gb|L14321.1|HSBBICP4B Bovine herpesvirus type 1 immedidate-early transcriptional control protein (BICP4) gene, 5' end Length = 2764 Score = 40.1 bits (20), Expect = 3.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 80 gcgcgcggccccggcggcgc 99 |||||||||||||||||||| Sbjct: 2362 gcgcgcggccccggcggcgc 2381 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,156,416 Number of Sequences: 3902068 Number of extensions: 2156416 Number of successful extensions: 44379 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 43675 Number of HSP's gapped (non-prelim): 704 length of query: 246 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 224 effective length of database: 17,147,199,772 effective search space: 3840972748928 effective search space used: 3840972748928 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
