ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl12a07 |
|---|---|
| Clone Library Name | barley_pub |
>AKH2_MAIZE (P49080) Bifunctional aspartokinase/homoserine dehydrogenase 2,| chloroplast precursor (AK-HD 2) (AK-HSDH 2) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)] Length = 917 Score = 97.8 bits (242), Expect = 6e-21 Identities = 55/104 (52%), Positives = 64/104 (61%), Gaps = 5/104 (4%) Frame = +1 Query: 73 MRSLAVASPVPTAAAHRR-RLRPSASGREVISQCLKCEINQDRPLGA-LRLG---GNLPR 237 M+ LAV+ +P AAA R R R S+S RE + QC K E++QD LG LR+G G+L R Sbjct: 1 MQGLAVSCQLPPAAAAARWRPRASSSNREAVLQCWKYELSQDHYLGGPLRIGQSQGSLHR 60 Query: 238 HGSKNLLTPXXXXXXXXXXXXXTYLPKGDMWPVHKFGGTCMGTP 369 H S N L P TYLPKGDMW VHKFGGTCMGTP Sbjct: 61 HRSTNFLRPAAAAISVEQDEVNTYLPKGDMWSVHKFGGTCMGTP 104
>AKH1_MAIZE (P49079) Bifunctional aspartokinase/homoserine dehydrogenase 1,| chloroplast precursor (AK-HD 1) (AK-HSDH 1) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)] Length = 920 Score = 79.3 bits (194), Expect = 2e-15 Identities = 50/106 (47%), Positives = 56/106 (52%), Gaps = 8/106 (7%) Frame = +1 Query: 73 MRSLAVASPVPTAAAHRRR---LRPSASGRE-VISQCLKCEINQDRPLGALRLGGNLPR- 237 MRSL VAS P AA RR L P+A+GR+ +C + E QD G+ LPR Sbjct: 1 MRSLTVASRHPGAAFSTRRRPLLHPAAAGRDSTFQRCWRWEKTQDSSFGSSLRTSRLPRT 60 Query: 238 -HGS--KNLLTPXXXXXXXXXXXXXTYLPKGDMWPVHKFGGTCMGT 366 HG KNLL P LPKGDMW VHKFGGTCMGT Sbjct: 61 VHGDILKNLLAPTAGAVSVEQAEAIADLPKGDMWSVHKFGGTCMGT 106
>AKH_DAUCA (P37142) Bifunctional aspartokinase/homoserine dehydrogenase,| chloroplast precursor (AK-HD) (AK-HSDH) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)] (Fragment) Length = 921 Score = 39.3 bits (90), Expect = 0.002 Identities = 13/20 (65%), Positives = 18/20 (90%) Frame = +1 Query: 307 YLPKGDMWPVHKFGGTCMGT 366 +LP+G MW +HKFGGTC+G+ Sbjct: 85 HLPRGAMWSIHKFGGTCVGS 104
>IF2_CORGL (Q8NP40) Translation initiation factor IF-2| Length = 1004 Score = 31.2 bits (69), Expect = 0.64 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = -2 Query: 153 PAGGGRPEPPSMGGGCRDGARDGE 82 P GG RP+ GG RDG RDG+ Sbjct: 233 PGGGPRPQGQGRPGGQRDGQRDGQ 256
>LIPA2_HUMAN (O75334) Liprin-alpha-2 (Protein tyrosine phosphatase receptor type| f polypeptide-interacting protein alpha-2) (PTPRF-interacting protein alpha-2) Length = 1257 Score = 30.8 bits (68), Expect = 0.84 Identities = 22/72 (30%), Positives = 29/72 (40%) Frame = +1 Query: 19 HSEPPLLPAFRAASPRREMRSLAVASPVPTAAAHRRRLRPSASGREVISQCLKCEINQDR 198 HS P L P SP REM + V + HRR++ +KCE + Sbjct: 722 HSTPKLTPR----SPAREMDRMGVMTLPSDLRKHRRKIAVVEEDGREDKATIKCETSPPP 777 Query: 199 PLGALRLGGNLP 234 ALR+ LP Sbjct: 778 TPRALRMTHTLP 789
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 30.8 bits (68), Expect = 0.84 Identities = 18/43 (41%), Positives = 24/43 (55%) Frame = +1 Query: 16 RHSEPPLLPAFRAASPRREMRSLAVASPVPTAAAHRRRLRPSA 144 R PP P R +SP R+ R L+ P+A+ RRR RPS+ Sbjct: 364 RSRSPPKKPPKRTSSPPRKTRRLS-----PSASPPRRRHRPSS 401
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 30.4 bits (67), Expect = 1.1 Identities = 18/42 (42%), Positives = 23/42 (54%) Frame = +1 Query: 16 RHSEPPLLPAFRAASPRREMRSLAVASPVPTAAAHRRRLRPS 141 R PP P R +SP R+ R L+ P+A+ RRR RPS Sbjct: 366 RSRSPPKKPPKRTSSPPRKTRRLS-----PSASPPRRRHRPS 402
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 30.4 bits (67), Expect = 1.1 Identities = 18/42 (42%), Positives = 23/42 (54%) Frame = +1 Query: 16 RHSEPPLLPAFRAASPRREMRSLAVASPVPTAAAHRRRLRPS 141 R PP P R +SP R+ R L+ P+A+ RRR RPS Sbjct: 366 RSRSPPKKPPKRTSSPPRKTRRLS-----PSASPPRRRHRPS 402
>NNMT_HUMAN (P40261) Nicotinamide N-methyltransferase (EC 2.1.1.1)| Length = 264 Score = 30.4 bits (67), Expect = 1.1 Identities = 11/23 (47%), Positives = 17/23 (73%) Frame = +1 Query: 151 REVISQCLKCEINQDRPLGALRL 219 R+ + Q LKC++ Q +PLGA+ L Sbjct: 132 RQAVKQVLKCDVTQSQPLGAVPL 154
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 30.0 bits (66), Expect = 1.4 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = -2 Query: 150 AGGGRPEPPSMGGGCRDGARDGEAPH 73 A GG P+PP GGG G R AP+ Sbjct: 218 APGGHPKPPHRGGGEPRGGRQHHAPY 243
>CAPP_BURPS (Q63W75) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)| (PEPC) Length = 994 Score = 30.0 bits (66), Expect = 1.4 Identities = 24/67 (35%), Positives = 30/67 (44%) Frame = +1 Query: 4 SLLPRHSEPPLLPAFRAASPRREMRSLAVASPVPTAAAHRRRLRPSASGREVISQCLKCE 183 S P H+EPP A RAA P R++ A PT AA +P RE Sbjct: 18 SSAPAHAEPP---ARRAAKPARKLDGAAARPLAPTNAA---SAKPQGRTRE--------- 62 Query: 184 INQDRPL 204 ++DRPL Sbjct: 63 -DKDRPL 68
>CAPP_BURMA (Q62LC1) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)| (PEPC) Length = 994 Score = 30.0 bits (66), Expect = 1.4 Identities = 24/67 (35%), Positives = 30/67 (44%) Frame = +1 Query: 4 SLLPRHSEPPLLPAFRAASPRREMRSLAVASPVPTAAAHRRRLRPSASGREVISQCLKCE 183 S P H+EPP A RAA P R++ A PT AA +P RE Sbjct: 18 SSAPAHAEPP---ARRAAKPARKLDGAAARPLAPTNAA---SAKPQGRTRE--------- 62 Query: 184 INQDRPL 204 ++DRPL Sbjct: 63 -DKDRPL 68
>SRR1L_MOUSE (Q8K2M3) SRR1-like protein (Fragment)| Length = 243 Score = 29.6 bits (65), Expect = 1.9 Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 23/84 (27%) Frame = +1 Query: 52 AASPRREMRSLAV---------ASPVPTAAAHRRRLRPS----------ASGREVISQCL 174 A +PRR R+ A P A RRLR + +S E I++CL Sbjct: 5 AVAPRRRKRAAGRRPRPGEGPRAEPDADGEAVLRRLREAEEDLRISDFCSSALETITECL 64 Query: 175 KCEINQDRP----LGALRLGGNLP 234 + ++ Q +P LG L LG +LP Sbjct: 65 RKQLEQLQPLTEALGRLHLGSSLP 88
>LIPA2_MOUSE (Q8BSS9) Liprin-alpha-2 (Protein tyrosine phosphatase receptor type| f polypeptide-interacting protein alpha-2) (PTPRF-interacting protein alpha-2) Length = 1257 Score = 29.6 bits (65), Expect = 1.9 Identities = 21/72 (29%), Positives = 29/72 (40%) Frame = +1 Query: 19 HSEPPLLPAFRAASPRREMRSLAVASPVPTAAAHRRRLRPSASGREVISQCLKCEINQDR 198 HS P L P SP REM + V + HRR++ +KCE + Sbjct: 722 HSTPKLTPR----SPAREMDRMGVMTLPSDLRKHRRKIAVVEEDGREDKATIKCETSPPP 777 Query: 199 PLGALRLGGNLP 234 A+R+ LP Sbjct: 778 TPRAVRMTHTLP 789
>NNMT_MOUSE (O55239) Nicotinamide N-methyltransferase (EC 2.1.1.1)| Length = 264 Score = 28.9 bits (63), Expect = 3.2 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +1 Query: 151 REVISQCLKCEINQDRPLGALRL 219 R I Q LKC++ Q +PLG + L Sbjct: 132 RRAIKQVLKCDVTQSQPLGGVSL 154
>PRAX_HUMAN (Q9BXM0) Periaxin| Length = 1461 Score = 28.5 bits (62), Expect = 4.2 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = +1 Query: 64 RREMRSLAVASPVPTAAAHRRRLRPSASGREVISQ 168 RR +++ AV PVP A A RR P REV + Sbjct: 167 RRGLKAEAVKGPVPAAPARRRLQLPRLRVREVAEE 201
>PRAX_MOUSE (O55103) Periaxin| Length = 1391 Score = 28.5 bits (62), Expect = 4.2 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = +1 Query: 64 RREMRSLAVASPVPTAAAHRRRLRPSASGREVISQ 168 RR +++ AV PVP A A RR P REV + Sbjct: 167 RRGLKAEAVKGPVPAAPARRRLQLPRLRVREVAEE 201
>VGLY_PIARV (P03540) Glycoprotein polyprotein [Contains: Glycoprotein G1;| Glycoprotein G2] Length = 503 Score = 28.5 bits (62), Expect = 4.2 Identities = 15/45 (33%), Positives = 24/45 (53%) Frame = +2 Query: 221 EEICQDMVLRICSHQLLQPFQLNKLKSVLIFQKVICGLCTSSVAL 355 EE C M L + ++ QLN S+ +F+K I GL + S+ + Sbjct: 321 EEFCDTMRLFDFNQNAIKTLQLNVENSLNLFKKTINGLISDSLVI 365
>LIP2_GEOCN (P22394) Lipase 2 precursor (EC 3.1.1.3) (Lipase II) (GCL II)| Length = 563 Score = 28.1 bits (61), Expect = 5.5 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 7/64 (10%) Frame = +1 Query: 76 RSLAVASPVPTAAAHRRRLRPSASGREVISQCLKCEIN-------QDRPLGALRLGGNLP 234 +SL +A+ V A + RPS +G EVIS L+ +++ D PL LR P Sbjct: 4 KSLFLAAAVNLAGVLAQAPRPSLNGNEVISGVLEGKVDTFKGIPFADPPLNDLRFKHPQP 63 Query: 235 RHGS 246 GS Sbjct: 64 FTGS 67
>DNAE2_BORPA (Q7W9W1) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1052 Score = 28.1 bits (61), Expect = 5.5 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%) Frame = +1 Query: 43 AFRAASPRREMRSLAVASPVPTAAAHRR----RLRPSASGREVISQCLKCE 183 A RA PR+ + +LA A + T A HRR + SA R+++ + + E Sbjct: 849 ARRAGLPRQALDALAAADALRTLAGHRRLASWQAAASAQSRDLLREAVIVE 899
>DNAE2_BORBR (Q7WHW8) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1052 Score = 28.1 bits (61), Expect = 5.5 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 4/51 (7%) Frame = +1 Query: 43 AFRAASPRREMRSLAVASPVPTAAAHRR----RLRPSASGREVISQCLKCE 183 A RA PR+ + +LA A + T A HRR + SA R+++ + + E Sbjct: 849 ARRAGLPRQALDALAAADALRTLAGHRRLASWQAAASAQSRDLLREAVIVE 899
>SKN1_CAEEL (P34707) Protein skinhead-1| Length = 623 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/31 (41%), Positives = 19/31 (61%) Frame = +1 Query: 49 RAASPRREMRSLAVASPVPTAAAHRRRLRPS 141 R++SPR S+ +A VP A+ R+R R S Sbjct: 519 RSSSPRSSQSSIKIARVVPLASGQRKRGRQS 549
>PRAX_RAT (Q63425) Periaxin| Length = 1383 Score = 28.1 bits (61), Expect = 5.5 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = +1 Query: 64 RREMRSLAVASPVPTAAAHRRRLRPSASGREVISQ 168 RR +++ AV PVP A A RR P REV + Sbjct: 167 RRGLKADAVKGPVPAAPARRRLQLPRLRVREVAEE 201
>PLSB_PSEAE (Q9HXW7) Glycerol-3-phosphate acyltransferase (EC 2.3.1.15) (GPAT)| Length = 834 Score = 27.7 bits (60), Expect = 7.1 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = -1 Query: 244 NHVLANFLLTLELPKVGPDLSHTSNIVK 161 N +L L+ +GPDLSH N+VK Sbjct: 196 NRILRVHFRNLKTAVIGPDLSHRRNLVK 223
>OSA_DROME (Q8IN94) Trithorax group protein osa (Protein eyelid)| Length = 2716 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -2 Query: 150 AGGGRPEPPSMGGGCRDGARDGEAP 76 AGGG P PP M GG + G G++P Sbjct: 621 AGGGYPMPPHMHGGYKMGG-PGQSP 644
>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa DNA-pairing protein) (hPOMp Length = 707 Score = 27.3 bits (59), Expect = 9.3 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = -2 Query: 144 GGRPEPPSMGGGCRDGARDGEAPH 73 GG P+PP GGG G R P+ Sbjct: 228 GGHPKPPHRGGGEPRGGRQHHPPY 251
>RR1_PORPU (P51345) Chloroplast 30S ribosomal protein S1| Length = 263 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/39 (35%), Positives = 19/39 (48%) Frame = +1 Query: 115 AHRRRLRPSASGREVISQCLKCEINQDRPLGALRLGGNL 231 +HRR L AS ++ ++ INQ P G GNL Sbjct: 176 SHRRALIAQASSNLIVGNIIEGVINQITPYGLFIKAGNL 214 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 44,506,082 Number of Sequences: 219361 Number of extensions: 787448 Number of successful extensions: 2622 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 2457 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2619 length of database: 80,573,946 effective HSP length: 98 effective length of database: 59,076,568 effective search space used: 1417837632 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
