>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  125 bits (63), Expect = 9e-26
 Identities = 117/135 (86%)
 Strand = Plus / Minus

                                                                            
Query: 161      gcatctggtccttttgaccaactagtcctgcacttggaagatgccaaaaatttccaatca 220
                ||||||||||||||||| ||| |||||||||||||||||||||| |  || |||||||| 
Sbjct: 12129432 gcatctggtccttttgatcaattagtcctgcacttggaagatgctaggaagttccaatcg 12129373

                                                                            
Query: 221      cgttcatcaagtggctcttttaagctgttattgtctggggatggaaaaggctctacctgg 280
                 ||||| ||  |||| ||||||||||||  ||||||||| ||| |||||| ||| |||||
Sbjct: 12129372 tgttcaacagctggcacttttaagctgtcgttgtctgggaatgcaaaaggatcttcctgg 12129313

                               
Query: 281      ttcacaaaatccacc 295
                |||||||||||||||
Sbjct: 12129312 ttcacaaaatccacc 12129298



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                  
Query: 71       gtggagcttgattctgcagtgttccaagtgtcct 104
                |||||||||||||||||||| |||||||| ||||
Sbjct: 12129788 gtggagcttgattctgcagtcttccaagtatcct 12129755

>gb|AC132215.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0076E06, from chromosome 3, complete sequence
          Length = 126323

 Score =  125 bits (63), Expect = 9e-26
 Identities = 117/135 (86%)
 Strand = Plus / Minus

                                                                         
Query: 161   gcatctggtccttttgaccaactagtcctgcacttggaagatgccaaaaatttccaatca 220
             ||||||||||||||||| ||| |||||||||||||||||||||| |  || |||||||| 
Sbjct: 22041 gcatctggtccttttgatcaattagtcctgcacttggaagatgctaggaagttccaatcg 21982

                                                                         
Query: 221   cgttcatcaagtggctcttttaagctgttattgtctggggatggaaaaggctctacctgg 280
              ||||| ||  |||| ||||||||||||  ||||||||| ||| |||||| ||| |||||
Sbjct: 21981 tgttcaacagctggcacttttaagctgtcgttgtctgggaatgcaaaaggatcttcctgg 21922

                            
Query: 281   ttcacaaaatccacc 295
             |||||||||||||||
Sbjct: 21921 ttcacaaaatccacc 21907



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                               
Query: 71    gtggagcttgattctgcagtgttccaagtgtcct 104
             |||||||||||||||||||| |||||||| ||||
Sbjct: 22397 gtggagcttgattctgcagtcttccaagtatcct 22364

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  125 bits (63), Expect = 9e-26
 Identities = 117/135 (86%)
 Strand = Plus / Minus

                                                                            
Query: 161      gcatctggtccttttgaccaactagtcctgcacttggaagatgccaaaaatttccaatca 220
                ||||||||||||||||| ||| |||||||||||||||||||||| |  || |||||||| 
Sbjct: 12126195 gcatctggtccttttgatcaattagtcctgcacttggaagatgctaggaagttccaatcg 12126136

                                                                            
Query: 221      cgttcatcaagtggctcttttaagctgttattgtctggggatggaaaaggctctacctgg 280
                 ||||| ||  |||| ||||||||||||  ||||||||| ||| |||||| ||| |||||
Sbjct: 12126135 tgttcaacagctggcacttttaagctgtcgttgtctgggaatgcaaaaggatcttcctgg 12126076

                               
Query: 281      ttcacaaaatccacc 295
                |||||||||||||||
Sbjct: 12126075 ttcacaaaatccacc 12126061



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                                  
Query: 71       gtggagcttgattctgcagtgttccaagtgtcct 104
                |||||||||||||||||||| |||||||| ||||
Sbjct: 12126551 gtggagcttgattctgcagtcttccaagtatcct 12126518

>dbj|AK072405.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023080M15, full
           insert sequence
          Length = 2282

 Score =  125 bits (63), Expect = 9e-26
 Identities = 117/135 (86%)
 Strand = Plus / Plus

                                                                       
Query: 161 gcatctggtccttttgaccaactagtcctgcacttggaagatgccaaaaatttccaatca 220
           ||||||||||||||||| ||| |||||||||||||||||||||| |  || |||||||| 
Sbjct: 401 gcatctggtccttttgatcaattagtcctgcacttggaagatgctaggaagttccaatcg 460

                                                                       
Query: 221 cgttcatcaagtggctcttttaagctgttattgtctggggatggaaaaggctctacctgg 280
            ||||| ||  |||| ||||||||||||  ||||||||| ||| |||||| ||| |||||
Sbjct: 461 tgttcaacagctggcacttttaagctgtcgttgtctgggaatgcaaaaggatcttcctgg 520

                          
Query: 281 ttcacaaaatccacc 295
           |||||||||||||||
Sbjct: 521 ttcacaaaatccacc 535



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                       
Query: 71  gtggagcttgattctgcagtgttccaagtgtccttgaccaaaaacaggtatgaggcaatt 130
           |||||||||||||||||||| |||||||| ||||   || | ||||| || |||||||||
Sbjct: 311 gtggagcttgattctgcagtcttccaagtatcctcagcccagaacagatacgaggcaatt 370

                
Query: 131 gcttg 135
           |||||
Sbjct: 371 gcttg 375

>dbj|AK060756.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-H02, full
           insert sequence
          Length = 3611

 Score =  125 bits (63), Expect = 9e-26
 Identities = 117/135 (86%)
 Strand = Plus / Plus

                                                                       
Query: 161 gcatctggtccttttgaccaactagtcctgcacttggaagatgccaaaaatttccaatca 220
           ||||||||||||||||| ||| |||||||||||||||||||||| |  || |||||||| 
Sbjct: 158 gcatctggtccttttgatcaattagtcctgcacttggaagatgctaggaagttccaatcg 217

                                                                       
Query: 221 cgttcatcaagtggctcttttaagctgttattgtctggggatggaaaaggctctacctgg 280
            ||||| ||  |||| ||||||||||||  ||||||||| ||| |||||| ||| |||||
Sbjct: 218 tgttcaacagctggcacttttaagctgtcgttgtctgggaatgcaaaaggatcttcctgg 277

                          
Query: 281 ttcacaaaatccacc 295
           |||||||||||||||
Sbjct: 278 ttcacaaaatccacc 292



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 56/65 (86%)
 Strand = Plus / Plus

                                                                       
Query: 71  gtggagcttgattctgcagtgttccaagtgtccttgaccaaaaacaggtatgaggcaatt 130
           |||||||||||||||||||| |||||||| ||||   || | ||||| || |||||||||
Sbjct: 68  gtggagcttgattctgcagtcttccaagtatcctcagcccagaacagatacgaggcaatt 127

                
Query: 131 gcttg 135
           |||||
Sbjct: 128 gcttg 132

>emb|AL671967.1| Human DNA sequence from clone RP11-544L8 on chromosome 6 Contains the
             3' end of the HDAC2 gene for histone deacetylase 2 (human
             transcriptional regulator homolog RPD3, YAF1) and a
             putative novel gene, complete sequence
          Length = 66165

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 35    gttgtgggcaaaatggagaggagag 59
             |||||||||||||||| ||||||||
Sbjct: 58896 gttgtgggcaaaatggtgaggagag 58920

>emb|AL161640.23| Human DNA sequence from clone RP5-855F14 on chromosome 1 Contains two
             novel genes, the 3' end of the IRF2BP2 gene for interferon
             regulatory factor 2 binding protein 2 and a CpG island,
             complete sequence
          Length = 85818

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 250   attgtctggggatggaaaagg 270
             |||||||||||||||||||||
Sbjct: 69385 attgtctggggatggaaaagg 69405

>dbj|AB209190.1| Homo sapiens mRNA for histone deacetylase 2 variant protein
          Length = 4810

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 35   gttgtgggcaaaatggagaggagag 59
            |||||||||||||||| ||||||||
Sbjct: 1380 gttgtgggcaaaatggtgaggagag 1356

>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome
          Length = 3730232

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 64     tggcgacgtggagcttgatt 83
              ||||||||||||||||||||
Sbjct: 993413 tggcgacgtggagcttgatt 993432

>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 62      gctggcgacgtggagcttga 81
               ||||||||||||||||||||
Sbjct: 3946026 gctggcgacgtggagcttga 3946045

>emb|X14879.1|RNRT1BA Rat mRNA for RT1.B-1(alpha) chain of integral membrane protein
          Length = 1095

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 192  acttggaagatgccaaaaat 211
            ||||||||||||||||||||
Sbjct: 1028 acttggaagatgccaaaaat 1009

>emb|BX883043.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
              assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
              RT1n haplotype; segment 2/11
          Length = 347664

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 192    acttggaagatgccaaaaat 211
              ||||||||||||||||||||
Sbjct: 132351 acttggaagatgccaaaaat 132370

>emb|AL603842.9| Mouse DNA sequence from clone RP23-100P23 on chromosome 11 Contains the
             5' end of a novel gene, three novel genes, the Slc6a4 gene
             for solute carrier family 6 (neurotransmitter transporter,
             serotonin) member 4, the Blmh gene for bleomycin hydrolase
             and three CpG islands, complete sequence
          Length = 229289

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 239   tttaagctgttattgtctggggat 262
             ||||||||||| ||||||||||||
Sbjct: 88833 tttaagctgtttttgtctggggat 88856

>gb|AC120734.5| Rattus norvegicus  BAC CH230-220D1 (Children's Hospital Oakland
             Research Institute Rat (BN/SsNHsd/MCW) BAC library)
             complete sequence
          Length = 232990

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   acttggaagatgccaaaaat 211
             ||||||||||||||||||||
Sbjct: 34668 acttggaagatgccaaaaat 34649

>gb|AC018711.4| Homo sapiens BAC clone RP11-324K4 from 1, complete sequence
          Length = 167334

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 102   ccttgaccaaaaacaggtatgagg 125
             ||||||||||| ||||||||||||
Sbjct: 63113 ccttgaccaaacacaggtatgagg 63136

>gb|M22366.1|RATRT1BA2 Rattus norvegicus MHC RT1.B-alpha precursor, gene, exons 2-4 and
            complete cds
          Length = 2481

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 192  acttggaagatgccaaaaat 211
            ||||||||||||||||||||
Sbjct: 2256 acttggaagatgccaaaaat 2237

>gb|AC093422.3| Homo sapiens chromosome 1 clone RP11-383G10, complete sequence
          Length = 180872

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 102    ccttgaccaaaaacaggtatgagg 125
              ||||||||||| ||||||||||||
Sbjct: 124848 ccttgaccaaacacaggtatgagg 124825

>gb|AF443213.1| Fusarium graminearum dsRNA mycovirus-1 clone pDK-1 sequence
          Length = 825

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 96  aagtgtccttgaccaaaaac 115
           ||||||||||||||||||||
Sbjct: 180 aagtgtccttgaccaaaaac 161

>gb|AY533037.1| Fusarium graminearum dsRNA mycovirus-1 strain DK-21, complete genome
          Length = 6624

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 96   aagtgtccttgaccaaaaac 115
            ||||||||||||||||||||
Sbjct: 1371 aagtgtccttgaccaaaaac 1352

>gb|AC005304.1|AC005304 Homo sapiens chromosome 17, clone hRPK.131_K_5, complete sequence
          Length = 164017

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 157   agtagcatctggtccttttg 176
             ||||||||||||||||||||
Sbjct: 68882 agtagcatctggtccttttg 68863

>gb|BC086448.1| Rattus norvegicus RT1 class II, locus Ba, mRNA (cDNA clone MGC:105667
            IMAGE:7304077), complete cds
          Length = 1095

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 192  acttggaagatgccaaaaat 211
            ||||||||||||||||||||
Sbjct: 1003 acttggaagatgccaaaaat 984

>gb|M29311.1|RATMHCIAA Rat MHC class II Ia-A alpha chain mRNA, partial cds
          Length = 681

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 192 acttggaagatgccaaaaat 211
           ||||||||||||||||||||
Sbjct: 613 acttggaagatgccaaaaat 594

>gb|K02815.1|RATMHAART Rat MHC RT1-B region class II (Ia antigen) A-alpha glycoprotein
           mRNA (haplotype Rt1-u)
          Length = 681

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 192 acttggaagatgccaaaaat 211
           ||||||||||||||||||||
Sbjct: 613 acttggaagatgccaaaaat 594


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,862,722
Number of Sequences: 3902068
Number of extensions: 2862722
Number of successful extensions: 47112
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47046
Number of HSP's gapped (non-prelim): 64
length of query: 325
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 303
effective length of database: 17,147,199,772
effective search space: 5195601530916
effective search space used: 5195601530916
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)