Clone Information

BLAST Search Result

Clone Name	bastl12a05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	NRX2A_RAT (Q63374) Neurexin-2-alpha precursor (Neurexin II-alpha)	35	0.077
2	NRX2B_RAT (Q63376) Neurexin-2-beta precursor (Neurexin II-beta)	35	0.077
3	TLE1_BRARE (O13168) Groucho 1 protein (Fragment)	35	0.077
4	NRX2B_HUMAN (P58401) Neurexin-2-beta precursor (Neurexin II-beta)	34	0.13
5	NRX2A_HUMAN (Q9P2S2) Neurexin-2-alpha precursor (Neurexin II-alpha)	34	0.13
6	WIRE_MOUSE (Q6PEV3) WIP-related protein (WASP-interacting protei...	34	0.17
7	SF3B2_HUMAN (Q13435) Splicing factor 3B subunit 2 (Spliceosome-a...	33	0.29
8	GLT3_WHEAT (P08488) Glutenin, high molecular weight subunit 12 p...	33	0.29
9	DEPP_RAT (Q5BMD4) Protein DEPP	33	0.38
10	GLT0_WHEAT (P10387) Glutenin, high molecular weight subunit DY10...	33	0.38
11	Y2143_MYCLE (O33057) Hypothetical protein ML2143	32	0.50
12	WIRE_HUMAN (Q8TF74) WIP-related protein (WASP-interacting protei...	32	0.85
13	RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats pro...	31	1.1
14	IF4B_MOUSE (Q8BGD9) Eukaryotic translation initiation factor 4B ...	31	1.5
15	IF4B_HUMAN (P23588) Eukaryotic translation initiation factor 4B ...	31	1.5
16	PAF49_MOUSE (Q76KJ5) RNA polymerase I-associated factor PAF49 (A...	31	1.5
17	CSP_PLAKU (P04922) Circumsporozoite protein precursor (CS)	30	1.9
18	OSBP2_HUMAN (Q969R2) Oxysterol-binding protein 2 (Oxysterol-bind...	30	1.9
19	PRGR_CANFA (Q9GLW0) Progesterone receptor (PR)	30	1.9
20	SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1	30	2.5
21	GLT5_WHEAT (P10388) Glutenin, high molecular weight subunit DX5 ...	30	2.5
22	POL_HV2KR (Q74120) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:...	30	2.5
23	IF2_STRAW (Q82K53) Translation initiation factor IF-2	30	2.5
24	SOX14_DROME (P40656) Putative transcription factor SOX-14	27	2.6
25	RL2_THEMA (P38510) 50S ribosomal protein L2	30	3.2
26	IF2_MYCPA (Q73VV4) Translation initiation factor IF-2	30	3.2
27	STAC3_XENTR (Q68F99) SH3 and cysteine-rich domain-containing pro...	29	4.2
28	RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats pro...	29	4.2
29	IF2_LEPIC (Q72NX3) Translation initiation factor IF-2	29	4.2
30	GA2L1_HUMAN (Q99501) GAS2-like protein 1 (Growth arrest-specific...	29	4.2
31	PEX12_PICPA (Q01961) Peroxisome assembly protein 12 (Peroxin-12)...	29	4.2
32	ACINU_HUMAN (Q9UKV3) Apoptotic chromatin condensation inducer in...	29	4.2
33	MARCS_MOUSE (P26645) Myristoylated alanine-rich C-kinase substra...	29	4.2
34	CO4A3_HUMAN (Q01955) Collagen alpha-3(IV) chain precursor (Goodp...	29	4.2
35	GLT4_WHEAT (P08489) Glutenin, high molecular weight subunit PW21...	29	4.2
36	CO5A2_HUMAN (P05997) Collagen alpha-2(V) chain precursor	29	4.2
37	MYCO_STRCI (P20910) Mycolysin precursor (EC 3.4.24.31) (Neutral ...	29	4.2
38	ELK4_MOUSE (P41158) ETS domain-containing protein Elk-4 (Serum r...	29	4.2
39	Y3887_METAC (Q8TJA1) UPF0284 protein MA3887	29	4.2
40	CIC_HUMAN (Q96RK0) Protein capicua homolog	29	4.2
41	AMPH_RAT (O08838) Amphiphysin	29	5.5
42	GVPI2_HALSA (Q9HHT7) Protein gvpI 2	29	5.5
43	VE4_HPV57 (P22157) Probable protein E4	29	5.5
44	VID21_ASPFU (Q4WP03) Chromatin modification-related protein vid21	29	5.5
45	MBA2_ECOLI (P07112) Mobilization protein A	29	5.5
46	IL16_SAISC (O62677) Interleukin-16 precursor (IL-16) (Lymphocyte...	29	5.5
47	NUKM_NEUCR (O47950) NADH-ubiquinone oxidoreductase 19.3 kDa subu...	28	7.2
48	FMN_CHICK (Q05858) Formin (Limb deformity protein)	28	7.2
49	TREF1_HUMAN (Q96PN7) Transcriptional-regulating factor 1 (Transc...	28	7.2
50	RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats prote...	28	7.2
51	SMRD1_MOUSE (Q61466) SWI/SNF-related matrix-associated actin-dep...	28	7.2
52	SMRD1_HUMAN (Q96GM5) SWI/SNF-related matrix-associated actin-dep...	28	7.2
53	POLS_RUBVT (P07566) Structural polyprotein [Contains: Nucleocaps...	28	7.2
54	NPTXR_RAT (O35764) Neuronal pentraxin receptor	28	7.2
55	FOXK1_MOUSE (P42128) Forkhead box protein K1 (Myocyte nuclear fa...	28	7.2
56	Y708_METMA (Q8PYZ0) UPF0284 protein MM0708	28	7.2
57	MILK1_MOUSE (Q8BGT6) Molecule interacting with Rab13 (MIRab13) (...	28	9.4
58	VID21_NEUCR (Q7SBU6) Chromatin modification-related protein vid-21	28	9.4
59	SPK1_CAEBR (Q61IS6) Serine/threonine-protein kinase spk-1 (EC 2....	28	9.4
60	NR4A3_HUMAN (Q92570) Orphan nuclear receptor NR4A3 (Nuclear horm...	28	9.4
61	CILP1_PIG (O19112) Cartilage intermediate layer protein 1 (CILP-...	28	9.4
62	BRPF3_HUMAN (Q9ULD4) Bromodomain and PHD finger-containing prote...	28	9.4
63	ZN469_HUMAN (Q96JG9) Zinc finger protein 469 (Fragment)	28	9.4
64	ZN219_HUMAN (Q9P2Y4) Zinc finger protein 219	28	9.4
65	NHS_HUMAN (Q6T4R5) Nance-Horan syndrome protein (Congenital cata...	28	9.4
66	CXX1_HUMAN (O15255) CAAX box protein 1 (Cerebral protein 5)	28	9.4
67	NCOA6_HUMAN (Q14686) Nuclear receptor coactivator 6 (Amplified i...	28	9.4
68	ASPX_PAPHA (Q06990) Acrosomal protein SP-10 precursor (Acrosomal...	28	9.4
69	ZAR1_RAT (Q7TSX9) Zygote arrest 1 (Oocyte-specific maternal effe...	28	9.4
70	VID21_CRYNE (Q5KL22) Chromatin modification-related protein VID21	28	9.4
71	IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2	28	9.4
72	LPRE_MYCLE (Q9CC94) Putative lipoprotein lprE precursor	28	9.4

>NRX2A_RAT (Q63374) Neurexin-2-alpha precursor (Neurexin II-alpha)|
          Length = 1715

 Score = 35.0 bits (79), Expect = 0.077
 Identities = 23/59 (38%), Positives = 27/59 (45%)
 Frame = -1

Query: 313  LLGTRKP*PALELGCREGSKTPHPPRLSSPMLALGATAAITPRRPAGLRPLLHSCGGKP 137
            LL    P P L  G +   + P  P L +P L  G   A  PRRP  LRP + S  G P
Sbjct: 1553 LLAPSAPAPNLPAG-KMNHRDPLQPLLENPPLGPGVPTAFEPRRPPPLRPGVTSVPGFP 1610

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>NRX2B_RAT (Q63376) Neurexin-2-beta precursor (Neurexin II-beta)|
          Length = 662

 Score = 35.0 bits (79), Expect = 0.077
 Identities = 23/59 (38%), Positives = 27/59 (45%)
 Frame = -1

Query: 313 LLGTRKP*PALELGCREGSKTPHPPRLSSPMLALGATAAITPRRPAGLRPLLHSCGGKP 137
           LL    P P L  G +   + P  P L +P L  G   A  PRRP  LRP + S  G P
Sbjct: 500 LLAPSAPAPNLPAG-KMNHRDPLQPLLENPPLGPGVPTAFEPRRPPPLRPGVTSVPGFP 557

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>TLE1_BRARE (O13168) Groucho 1 protein (Fragment)|
          Length = 535

 Score = 35.0 bits (79), Expect = 0.077
 Identities = 34/122 (27%), Positives = 47/122 (38%), Gaps = 5/122 (4%)
 Frame = -3

Query: 428 RRTAPGLSASQGTR---SPEPGVENPASSDQTPAQRQRGDVPSRDQKAVTGARIRLQGGK 258
           + + PGL ++  T    +P PG  N      TP  R R   P    +A+T   +R     
Sbjct: 83  KSSTPGLKSNTPTHRNDAPTPGTSN------TPGLRPRPGKPP-GMEALTAPALR----- 130

Query: 257 QNPAPAQIEQPHARVGRHRGHHPSSAGGFATPTAFLWW*TSAEKLANSAG--GRTSCPAL 84
               P  I  P+       GHHP   G   +P  +     S +  A +A   GRTS P  
Sbjct: 131 ---TPLSIAPPYGTPFM-MGHHPEMNGSLTSPGVYAGLHISPQMSAAAAAAYGRTSMPGF 186

Query: 83  SP 78
            P
Sbjct: 187 DP 188

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>NRX2B_HUMAN (P58401) Neurexin-2-beta precursor (Neurexin II-beta)|
          Length = 666

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 22/59 (37%), Positives = 27/59 (45%)
 Frame = -1

Query: 313 LLGTRKP*PALELGCREGSKTPHPPRLSSPMLALGATAAITPRRPAGLRPLLHSCGGKP 137
           L     P P L  G +   + P  P L +P L  GA  +  PRRP  LRP + S  G P
Sbjct: 504 LFAPSAPAPNLPAG-KMNHRDPLQPLLENPPLGPGAPTSFEPRRPPPLRPGVTSAPGFP 561

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>NRX2A_HUMAN (Q9P2S2) Neurexin-2-alpha precursor (Neurexin II-alpha)|
          Length = 1712

 Score = 34.3 bits (77), Expect = 0.13
 Identities = 22/59 (37%), Positives = 27/59 (45%)
 Frame = -1

Query: 313  LLGTRKP*PALELGCREGSKTPHPPRLSSPMLALGATAAITPRRPAGLRPLLHSCGGKP 137
            L     P P L  G +   + P  P L +P L  GA  +  PRRP  LRP + S  G P
Sbjct: 1550 LFAPSAPAPNLPAG-KMNHRDPLQPLLENPPLGPGAPTSFEPRRPPPLRPGVTSAPGFP 1607

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>WIRE_MOUSE (Q6PEV3) WIP-related protein (WASP-interacting protein-related|
           protein)
          Length = 440

 Score = 33.9 bits (76), Expect = 0.17
 Identities = 26/66 (39%), Positives = 30/66 (45%)
 Frame = -1

Query: 328 NAETSLLGTRKP*PALELGCREGSKTPHPPRLSSPMLALGATAAITPRRPAGLRPLLHSC 149
           +A  SLL  R P PA E   R G+  P PP    PM+  GA  A  P  P  +       
Sbjct: 301 SATPSLLSNRPPPPAREPPSR-GAAPPPPP----PMIRNGARDAPPPPPPYRMHGSEPPS 355

Query: 148 GGKPPP 131
            GKPPP
Sbjct: 356 RGKPPP 361

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>SF3B2_HUMAN (Q13435) Splicing factor 3B subunit 2 (Spliceosome-associated|
           protein 145) (SAP 145) (SF3b150) (Pre-mRNA splicing
           factor SF3b 145 kDa subunit)
          Length = 872

 Score = 33.1 bits (74), Expect = 0.29
 Identities = 21/64 (32%), Positives = 33/64 (51%)
 Frame = -1

Query: 322 ETSLLGTRKP*PALELGCREGSKTPHPPRLSSPMLALGATAAITPRRPAGLRPLLHSCGG 143
           E + +GT  P P  ++G + G +TP  PR+++P+  +G T  + P      RP      G
Sbjct: 172 EIAKMGTPVPRPPQDMG-QIGVRTPLGPRVAAPVGPVGPTPTVLPMGAPVPRP-----RG 225

Query: 142 KPPP 131
            PPP
Sbjct: 226 PPPP 229

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>GLT3_WHEAT (P08488) Glutenin, high molecular weight subunit 12 precursor|
          Length = 660

 Score = 33.1 bits (74), Expect = 0.29
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
 Frame = -3

Query: 356 SSDQTPAQRQRGDVPSRDQKAVTGARIRLQGGKQNPA-------PAQIEQPHARVGRHRG 198
           +S Q P Q Q+G  P+  Q+   G + ++   +Q P        PA ++QP       +G
Sbjct: 324 ASQQQPGQGQQGHYPASQQEPGQGQQGQIPASQQQPGQGQQGHYPASLQQP-----GQQG 378

Query: 197 HHPSS 183
           H+P+S
Sbjct: 379 HYPTS 383



 Score = 29.6 bits (65), Expect = 3.2
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = -3

Query: 356 SSDQTPAQRQRGDVPSRDQKAVTGARIRLQGGKQNPAPAQIEQPHARVGRHRGHHPSS 183
           +S Q PAQ Q+G  P+  Q+   G +      +Q P   Q           +GH+P+S
Sbjct: 294 ASQQQPAQGQQGHYPASQQQPGQGQQGHYPASQQQPGQGQ-----------QGHYPAS 340



 Score = 29.3 bits (64), Expect = 4.2
 Identities = 19/64 (29%), Positives = 27/64 (42%)
 Frame = -3

Query: 416 PGLSASQGTRSPEPGVENPASSDQTPAQRQRGDVPSRDQKAVTGARIRLQGGKQNPAPAQ 237
           PG    Q  +  +PG        Q P Q Q+G  P+  Q+   G   +L  G+Q   P  
Sbjct: 471 PGQGQGQPGQRQQPGQGQHPEQGQQPGQGQQGYYPTSPQQPGQGQ--QLGQGQQGYYPTS 528

Query: 236 IEQP 225
            +QP
Sbjct: 529 PQQP 532



 Score = 29.3 bits (64), Expect = 4.2
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
 Frame = -3

Query: 356 SSDQTPAQRQRGDVPSRDQKAVTGARIRLQGGKQNPA-------PAQIEQPHARVGRHRG 198
           +S Q P Q Q+G  P+  Q+   G +      +Q P        PA  +QP       +G
Sbjct: 309 ASQQQPGQGQQGHYPASQQQPGQGQQGHYPASQQEPGQGQQGQIPASQQQPGQ---GQQG 365

Query: 197 HHPSS 183
           H+P+S
Sbjct: 366 HYPAS 370

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>DEPP_RAT (Q5BMD4) Protein DEPP|
          Length = 205

 Score = 32.7 bits (73), Expect = 0.38
 Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
 Frame = -3

Query: 431 LRRTAPGLSASQGTRSPEPGVENPAS---SDQTPAQRQRGDVPSRDQKAVTGAR----IR 273
           L  ++P  S+ Q T  P PG +NP           Q  R D+P+R     TG+     + 
Sbjct: 82  LEDSSPCFSSLQPTL-PAPGTDNPLDWLFGKSQEQQTDRRDLPNR-----TGSSGHWGVH 135

Query: 272 LQGGKQNPAPAQIEQPHARVGRHRGH 195
            Q GK +  P++   P   +GR  GH
Sbjct: 136 RQMGKDSGRPSEARVPEYSLGRKPGH 161

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>GLT0_WHEAT (P10387) Glutenin, high molecular weight subunit DY10 precursor|
          Length = 648

 Score = 32.7 bits (73), Expect = 0.38
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
 Frame = -3

Query: 356 SSDQTPAQRQRGDVPSRDQKAVTGARIRLQGGKQNPA-------PAQIEQPHARVGRHRG 198
           +S Q P Q Q+G  P+  Q+   G + ++   +Q P        PA ++QP       +G
Sbjct: 312 ASQQQPGQGQQGHYPASQQEPGQGQQGQIPASQQQPGQGQQGHYPASLQQPGQ---GQQG 368

Query: 197 HHPSS 183
           H+P+S
Sbjct: 369 HYPTS 373



 Score = 29.3 bits (64), Expect = 4.2
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
 Frame = -3

Query: 356 SSDQTPAQRQRGDVPSRDQKAVTGARIRLQGGKQNPA-------PAQIEQPHARVGRHRG 198
           +S Q P Q Q+G  P+  Q+   G +      +Q P        PA  +QP       +G
Sbjct: 297 ASQQQPGQGQQGHYPASQQQPGQGQQGHYPASQQEPGQGQQGQIPASQQQPGQ---GQQG 353

Query: 197 HHPSS 183
           H+P+S
Sbjct: 354 HYPAS 358



 Score = 28.1 bits (61), Expect = 9.4
 Identities = 16/58 (27%), Positives = 25/58 (43%)
 Frame = -3

Query: 356 SSDQTPAQRQRGDVPSRDQKAVTGARIRLQGGKQNPAPAQIEQPHARVGRHRGHHPSS 183
           +S Q P Q Q+G  P+  Q+   G +      +Q P   Q           +GH+P+S
Sbjct: 282 ASQQQPGQGQQGHYPASQQQPGQGQQGHYPASQQQPGQGQ-----------QGHYPAS 328

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>Y2143_MYCLE (O33057) Hypothetical protein ML2143|
          Length = 579

 Score = 32.3 bits (72), Expect = 0.50
 Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
 Frame = -3

Query: 416 PGLSASQGTRSPEPGVEN-PA-SSDQTPAQRQRGDVPSRDQKA 294
           PGL    G+R+  PG+ N PA SSD  PAQ++R  +  R+Q+A
Sbjct: 16  PGLRTRTGSRNQHPGIANYPADSSDFRPAQQRRA-LEQREQQA 57

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>WIRE_HUMAN (Q8TF74) WIP-related protein (WASP-interacting protein-related|
           protein) (WIP-and CR16-homologous protein)
          Length = 440

 Score = 31.6 bits (70), Expect = 0.85
 Identities = 24/66 (36%), Positives = 30/66 (45%)
 Frame = -1

Query: 328 NAETSLLGTRKP*PALELGCREGSKTPHPPRLSSPMLALGATAAITPRRPAGLRPLLHSC 149
           +A  SLL  R P PA +   R G+  P PP    P++  GA  A  P  P  +       
Sbjct: 301 SASPSLLSNRPPPPARDPPSR-GAAPPPPP----PVIRNGARDAPPPPPPYRMHGSEPPS 355

Query: 148 GGKPPP 131
            GKPPP
Sbjct: 356 RGKPPP 361

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>RERE_HUMAN (Q9P2R6) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-1-like protein) (Atrophin-1-related protein)
          Length = 1566

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 28/86 (32%), Positives = 35/86 (40%), Gaps = 3/86 (3%)
 Frame = -1

Query: 343  PQLSGNAETSLLGTRKP*PALELGCREGSKTPHPPRLSSPMLALGATAAITPRRPAGLRP 164
            P LSG +  S+     P PAL+        T HPP    P L L   +   P  PA    
Sbjct: 949  PHLSGPSPFSMNANLPPPPALKP--LSSLSTHHPPSAHPPPLQLMPQSQPLPSSPAQPPG 1006

Query: 163  LLHSCGGKPPPRN---SLIQQVAELP 95
            L  S    PPP +   + + QVA  P
Sbjct: 1007 LTQSQNLPPPPASHPPTGLHQVAPQP 1032

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>IF4B_MOUSE (Q8BGD9) Eukaryotic translation initiation factor 4B (eIF-4B)|
          Length = 611

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 2   CRSPQSKHAQPNNPFSQLPLPPP 70
           C SP SK  +P+ P   +P PPP
Sbjct: 457 CHSPTSKPPKPDQPLKVMPAPPP 479

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>IF4B_HUMAN (P23588) Eukaryotic translation initiation factor 4B (eIF-4B)|
          Length = 611

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 2   CRSPQSKHAQPNNPFSQLPLPPP 70
           C SP SK  +P+ P   +P PPP
Sbjct: 457 CHSPTSKPPKPDQPLKVMPAPPP 479

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>PAF49_MOUSE (Q76KJ5) RNA polymerase I-associated factor PAF49 (Anti-sense to|
           ERCC-1 protein) (ASE-1) (CD3-epsilon-associated protein)
           (CD3E-associated protein)
          Length = 399

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 25/68 (36%), Positives = 33/68 (48%)
 Frame = -1

Query: 337 LSGNAETSLLGTRKP*PALELGCREGSKTPHPPRLSSPMLALGATAAITPRRPAGLRPLL 158
           L+ ++E     T  P P+  L   EG   P    LS   L L  T+ + P+ PAGLRP  
Sbjct: 95  LASSSEAGGRLTCAPAPSGSLRIMEG---PQEYLLSRVPLQLIPTS-LPPQIPAGLRPRF 150

Query: 157 HSCGGKPP 134
            + GG PP
Sbjct: 151 SAFGGSPP 158

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>CSP_PLAKU (P04922) Circumsporozoite protein precursor (CS)|
          Length = 351

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 3/96 (3%)
 Frame = -3

Query: 383 PEPGVENPASSDQTPAQRQRGDVPSRD---QKAVTGARIRLQGGKQNPAPAQIEQPHARV 213
           P+   EN     + PA    G+ P+     ++   GA     GG+Q  A A+ EQP A  
Sbjct: 86  PKKPNENKLKQPEQPAAGAGGEQPAAGAGGEQPAAGA-----GGEQPAAGARGEQPAAGA 140

Query: 212 GRHRGHHPSSAGGFATPTAFLWW*TSAEKLANSAGG 105
           G   G  P++  G   P A        E+ A  AGG
Sbjct: 141 G---GEQPAAGAGGEQPAAG----AGGEQPAAGAGG 169

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>OSBP2_HUMAN (Q969R2) Oxysterol-binding protein 2 (Oxysterol-binding|
           protein-related protein 4) (OSBP-related protein 4)
           (ORP-4)
          Length = 916

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 34/125 (27%), Positives = 48/125 (38%), Gaps = 10/125 (8%)
 Frame = -3

Query: 419 APGLSASQGTRSPEPGVENPASSDQTPAQRQRGDVPSRDQKAVTGARIRLQGGKQ---NP 249
           APG+SAS     PE     P    Q   + +RG +  +  +AV+ A  R +   +    P
Sbjct: 36  APGMSASTSGSGPE-----PKPQPQPVPEPERGPLSEQVSEAVSEAVPRSEPVSETTSEP 90

Query: 248 APAQIEQPHARVGRHRGHHPSSAGGFATPTAFLWW*TSAEKLANSAGGRT-------SCP 90
            P   +      G   G   SS  G    T       ++E L+ + G  T       S P
Sbjct: 91  EPGAGQPSELLQGSRPGSESSSGVGAGPFTK-----AASEPLSRAVGSATFLRPESGSLP 145

Query: 89  ALSPL 75
           AL PL
Sbjct: 146 ALKPL 150

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>PRGR_CANFA (Q9GLW0) Progesterone receptor (PR)|
          Length = 939

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 18/52 (34%), Positives = 22/52 (42%)
 Frame = -1

Query: 250 PHPPRLSSPMLALGATAAITPRRPAGLRPLLHSCGGKPPPRNSLIQQVAELP 95
           P PP  + P  A GA  A     P G  P+       P P+ SL +Q A  P
Sbjct: 251 PRPP--AGPAAAAGAAPAAPGTAPGGTAPVPKEDSRLPAPKGSLAEQDAPAP 300

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>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
 Frame = -2

Query: 348 PNPSSAATRRRPFSGPESRDRRSN*AAGREAKPRTRPD*AAPC-SRWAPP-----RPSPL 187
           P+P  A  RR P   P  R RRS  +  R   P   P   +P   R++PP      PSP 
Sbjct: 544 PSPPPARRRRSPSPPPPPRRRRSP-SLPRRRSPSPPPRRRSPSPRRYSPPIQRRYSPSPP 602

Query: 186 VGRRVCDP 163
             RR   P
Sbjct: 603 PKRRTASP 610

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>GLT5_WHEAT (P10388) Glutenin, high molecular weight subunit DX5 precursor|
          Length = 839

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 20/103 (19%)
 Frame = -3

Query: 431 LRRTAPGLSASQGTRSPEPG-----------------VENPASSDQ--TPAQRQRGDVPS 309
           L++ A G    QG +  +PG                 ++ PA   Q   P Q Q+G  P 
Sbjct: 179 LQQPAQGQQPGQGQQGQQPGQGQPGYYPTSSQLQPGQLQQPAQGQQGQQPGQAQQGQQPG 238

Query: 308 RDQKAVTGARIRLQGGKQNPAPAQIEQPHARVGR-HRGHHPSS 183
           + Q+   G + +  G  Q P   Q  Q   ++G+  +G++P+S
Sbjct: 239 QGQQPGQGQQGQQPGQGQQPGQGQQGQ---QLGQGQQGYYPTS 278



 Score = 28.1 bits (61), Expect = 9.4
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
 Frame = -3

Query: 392 TRSPEPGVENPASSDQTPAQRQRGDVPSRDQKAVTGARIRLQGGK-QNPAPAQI-EQP-H 222
           T   +PG     +  Q P Q Q+G  P + Q        +LQ G+ Q PA  Q  +QP  
Sbjct: 171 TSPQQPGQLQQPAQGQQPGQGQQGQQPGQGQPGYYPTSSQLQPGQLQQPAQGQQGQQPGQ 230

Query: 221 ARVGRHRG 198
           A+ G+  G
Sbjct: 231 AQQGQQPG 238

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>POL_HV2KR (Q74120) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.47) (Retropepsin)
           (PR); Reverse trans
          Length = 1462

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 26/95 (27%), Positives = 36/95 (37%)
 Frame = -3

Query: 431 LRRTAPGLSASQGTRSPEPGVENPASSDQTPAQRQRGDVPSRDQKAVTGARIRLQGGKQN 252
           LR    G  ASQ  R P P   +  S+   P+ R   +V +  ++A       +QGG + 
Sbjct: 432 LRDWPMGKEASQLPRDPSPAGADTNSTPSRPSSRPAREVLAAREEAERAENETIQGGDRG 491

Query: 251 PAPAQIEQPHARVGRHRGHHPSSAGGFATPTAFLW 147
                +  P  R    R        GFA P   LW
Sbjct: 492 -----LTAPRTR----RDTTQRGDRGFAAPQFSLW 517

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>IF2_STRAW (Q82K53) Translation initiation factor IF-2|
          Length = 1046

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
 Frame = -3

Query: 419 APGLSAS---QGTR--SPEPGVENPASSDQTPAQRQRGDVPSRDQKAVTGARIRLQGGKQ 255
           AP  +AS    G R  +P+PG   PA+  Q    + RG+   R  +   G R     G  
Sbjct: 141 APAAAASGPRPGARPGAPKPGGARPATPGQGQGGQVRGERTDRGDRGDRGDR----QGAA 196

Query: 254 NPAPAQIEQPHAR-VGRHRGHHPSSAGG 174
            P   Q  +P AR  G   G++P ++GG
Sbjct: 197 RPG-GQAPRPGARPAGPRPGNNPFTSGG 223

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>SOX14_DROME (P40656) Putative transcription factor SOX-14|
          Length = 472

 Score = 27.3 bits (59), Expect(2) = 2.6
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
 Frame = -1

Query: 247 HPPRLSSPMLALGATAAITPRRP----AGLRPLLHSCGGKPPPRNS 122
           HP  ++SP   + A A  TP+ P           HS    PPPR S
Sbjct: 87  HPAAVASPSAPVAAAAPKTPKTPEPRSTHTHTHTHSQHFSPPPRES 132



 Score = 21.2 bits (43), Expect(2) = 2.6
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = -3

Query: 428 RRTAPGLSASQGTRSPEPGVENPASSDQTPAQRQRGDVPSRDQKAVT 288
           R  AP   ++  T  P     +PASS      +  G   ++ Q A+T
Sbjct: 40  RHPAPKADSTPHTLPPFSPSPSPASSPSPAPAQTPGAQKTQSQAAIT 86

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>RL2_THEMA (P38510) 50S ribosomal protein L2|
          Length = 276

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 287 GARIRLQGGKQNPAPAQIEQPHAR-VGRHRGHHPSSAGGFAT 165
           G R  ++G   NP    ++ PH    GR +GHHP+S  G  T
Sbjct: 216 GRRPHVRGVAMNP----VDHPHGGGEGRGKGHHPTSPWGLPT 253

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>IF2_MYCPA (Q73VV4) Translation initiation factor IF-2|
          Length = 925

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 18/61 (29%), Positives = 24/61 (39%)
 Frame = -3

Query: 362 PASSDQTPAQRQRGDVPSRDQKAVTGARIRLQGGKQNPAPAQIEQPHARVGRHRGHHPSS 183
           P  +  TPA +   + P+R   A         G  + PAP Q  +P A  G   G  P  
Sbjct: 111 PGGTATTPAAQATPEAPARPGPAAARPSAPAPGQPKPPAPGQPPRPGATPGPRPGPAPKP 170

Query: 182 A 180
           A
Sbjct: 171 A 171

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>STAC3_XENTR (Q68F99) SH3 and cysteine-rich domain-containing protein 3|
          Length = 337

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 18/56 (32%), Positives = 22/56 (39%)
 Frame = -3

Query: 368 ENPASSDQTPAQRQRGDVPSRDQKAVTGARIRLQGGKQNPAPAQIEQPHARVGRHR 201
           E P      P ++Q GDVP  D+K   G     Q  K   A     Q H  V  +R
Sbjct: 179 EEPEELPPKPEEKQEGDVPDGDKKGEKGG----QDAKNKKAQPGFMQSHYFVALYR 230

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>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-2)
          Length = 1558

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 26/74 (35%), Positives = 29/74 (39%)
 Frame = -1

Query: 343  PQLSGNAETSLLGTRKP*PALELGCREGSKTPHPPRLSSPMLALGATAAITPRRPAGLRP 164
            P LSG +  SL     P PAL+        T HPP    P L L   +   P  PA   P
Sbjct: 941  PHLSGPSPFSLNANLPPPPALKP--LSSLSTHHPPSAHPPPLQLMPQSQPLPSSPA-QPP 997

Query: 163  LLHSCGGKPPPRNS 122
             L      PPP  S
Sbjct: 998  GLTQSQSLPPPAAS 1011

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>IF2_LEPIC (Q72NX3) Translation initiation factor IF-2|
          Length = 891

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 10/92 (10%)
 Frame = -3

Query: 416 PGLSASQGTRSPEPGVENPASSDQTPAQRQRGDVPSRDQKAVTGARIRLQGGKQNP---A 246
           PG S       P P   +PA  +++P ++  G  P RD+    G      GG   P   +
Sbjct: 81  PGDSGQSPIVRPAPSSHSPAKREESPGKQDAGR-PPRDKDTRQG------GGSSYPPSRS 133

Query: 245 PAQ-------IEQPHARVGRHRGHHPSSAGGF 171
           P Q       + +P  R G  R   P+S GG+
Sbjct: 134 PFQKEDSNIIVSRPIQRTGPSR---PNSGGGY 162

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>GA2L1_HUMAN (Q99501) GAS2-like protein 1 (Growth arrest-specific 2-like 1)|
           (GAS2-related protein on chromosome 22) (GAR22 protein)
          Length = 681

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 24/90 (26%), Positives = 33/90 (36%), Gaps = 11/90 (12%)
 Frame = -3

Query: 416 PGLSASQGTRSPEPGV-----------ENPASSDQTPAQRQRGDVPSRDQKAVTGARIRL 270
           P   +S   R P+P V            +P  +   P   +RG   SR +      R   
Sbjct: 273 PCRCSSTAHRPPQPRVCTFSPQRVSPTTSPRPASPVPGSERRG---SRPEMTPVSLRSTK 329

Query: 269 QGGKQNPAPAQIEQPHARVGRHRGHHPSSA 180
           +G +  P P     PH R  R+ G   SSA
Sbjct: 330 EGPETPPRPRDQLPPHPRSRRYSGDSDSSA 359

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>PEX12_PICPA (Q01961) Peroxisome assembly protein 12 (Peroxin-12) (Peroxisome|
           assembly protein PAS10)
          Length = 409

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +2

Query: 17  SKHAQPNNPFSQLPLPPPTR--EEITQDRKFCHLL 115
           +K  +P NPFS   LPPP    +++  DRK   LL
Sbjct: 295 TKMNKPRNPFSDSELPPPINLSKDLLADRKIKKLL 329

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>ACINU_HUMAN (Q9UKV3) Apoptotic chromatin condensation inducer in the nucleus|
           (Acinus)
          Length = 1341

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
 Frame = -1

Query: 274 GCREGSKTPHPPRLS-----SPMLALGATAAITPRRPAGLRPLLHSCGGKPPPRNSL 119
           G +E SK+P PPRL+     + ++AL    A     P    PLL      PPP   L
Sbjct: 379 GLKEKSKSPSPPRLTEDRKKASLVALPEQTASEEETPP---PLLTKEASSPPPHPQL 432

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>MARCS_MOUSE (P26645) Myristoylated alanine-rich C-kinase substrate (MARCKS)|
          Length = 308

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 16/52 (30%), Positives = 21/52 (40%)
 Frame = -2

Query: 348 PNPSSAATRRRPFSGPESRDRRSN*AAGREAKPRTRPD*AAPCSRWAPPRPS 193
           P P + A      +GPE     +   A   A P   P+    CS  APP P+
Sbjct: 255 PAPGATAGDASSAAGPEQEAPAATDEAAASAAPAASPEPQPECSPEAPPAPT 306

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>CO4A3_HUMAN (Q01955) Collagen alpha-3(IV) chain precursor (Goodpasture antigen)|
          Length = 1670

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -3

Query: 374  GVENPASSDQTPAQRQRGDVPS-RDQKAVTGARIRLQGGKQNPAPAQI 234
            G   P  +  TP QR    +P  + Q+   GA+   QG K NP P++I
Sbjct: 901  GPPGPPGNPGTPGQRGSPGIPGVKGQRGTPGAKGE-QGDKGNPGPSEI 947

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>GLT4_WHEAT (P08489) Glutenin, high molecular weight subunit PW212 precursor|
          Length = 838

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 20/103 (19%)
 Frame = -3

Query: 431 LRRTAPGLSASQGTRSPEPG-----------------VENPASSDQ--TPAQRQRGDVPS 309
           L++ A G    QG +  +PG                 ++ PA   Q   P Q Q+G  P 
Sbjct: 184 LQQPAQGQQPGQGQQGRQPGQGQPGYYPTSSQLQPGQLQQPAQGQQGQQPGQGQQGQQPG 243

Query: 308 RDQKAVTGARIRLQGGKQNPAPAQIEQPHARVGR-HRGHHPSS 183
           + Q+   G + +  G  Q P   Q  Q   ++G+  +G++P+S
Sbjct: 244 QGQQPGQGQQGQQPGQGQQPGQGQQGQ---QLGQGQQGYYPTS 283

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>CO5A2_HUMAN (P05997) Collagen alpha-2(V) chain precursor|
          Length = 1496

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 6/64 (9%)
 Frame = -3

Query: 416  PGLSASQGTRSP--EPGVENPASSDQTP----AQRQRGDVPSRDQKAVTGARIRLQGGKQ 255
            PG     G+  P  EPG E PA +D TP    A  +RGD        + G+    QG   
Sbjct: 1028 PGPVGPPGSNGPVGEPGPEGPAGNDGTPGRDGAVGERGDRGDPGPAGLPGS----QGAPG 1083

Query: 254  NPAP 243
             P P
Sbjct: 1084 TPGP 1087

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>MYCO_STRCI (P20910) Mycolysin precursor (EC 3.4.24.31) (Neutral|
           metalloproteinase) (NPR) (Pronase)
          Length = 550

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 16/37 (43%), Positives = 18/37 (48%)
 Frame = -2

Query: 315 PFSGPESRDRRSN*AAGREAKPRTRPD*AAPCSRWAP 205
           P SGP +  R     A   A P T P  AAP  R+AP
Sbjct: 177 PVSGPTTPGRPVRPGAAAPAAPSTPPQAAAPGKRYAP 213

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>ELK4_MOUSE (P41158) ETS domain-containing protein Elk-4 (Serum response factor|
           accessory protein 1) (SAP-1)
          Length = 430

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = -1

Query: 364 TLPLLTKPQLSGNAETSLLGTR----KP*PALELGCREGSKTPHPPRLSSP 224
           TL   T P L   A  S+L T      P P+  L  +E  +TP PP  S+P
Sbjct: 225 TLVFPTLPSLETPASISILATTFNPTPPVPSTPLPLKEPPRTPSPPLSSNP 275

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>Y3887_METAC (Q8TJA1) UPF0284 protein MA3887|
          Length = 349

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 19/51 (37%), Positives = 26/51 (50%)
 Frame = -1

Query: 304 TRKP*PALELGCREGSKTPHPPRLSSPMLALGATAAITPRRPAGLRPLLHS 152
           T+KP   + L     +KT H P+LS    A G TA +T   PAG   L+ +
Sbjct: 9   TKKPKKPMFLCVLSNTKTAHIPKLS----AAGKTAELTDYTPAGDAELIET 55

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>CIC_HUMAN (Q96RK0) Protein capicua homolog|
          Length = 1608

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = -3

Query: 386  SPEPGVENPASSDQTPAQRQRGDVPSRDQKAVTGARIRLQ 267
            +P P V  P  S ++ + R  GD P R + A TG +++++
Sbjct: 1296 APAPAVA-PGGSSESSSGRAAGDTPERKEAAGTGKKVKVR 1334

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>AMPH_RAT (O08838) Amphiphysin|
          Length = 683

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = -1

Query: 259 SKTPHPPRLSSPMLALGATA--AITPRRPAGLRPLLHSCGGKPPP 131
           +KTP PP  +SP+ +  A+    + P  PA +RP   S   K PP
Sbjct: 258 AKTPSPPEEASPLPSPTASPNHTLAPASPAPVRPRSPSQTRKGPP 302

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>GVPI2_HALSA (Q9HHT7) Protein gvpI 2|
          Length = 113

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 18/52 (34%), Positives = 20/52 (38%), Gaps = 9/52 (17%)
 Frame = -3

Query: 392 TRSPEPGVENPASSDQTPAQRQRGD---------VPSRDQKAVTGARIRLQG 264
           T  P     NPA+    PAQR             VP +   A T AR RL G
Sbjct: 51  TEQPTSDTTNPAAHSTLPAQRTNAQNAARNAHSTVPEQPTHATTAARARLYG 102

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>VE4_HPV57 (P22157) Probable protein E4|
          Length = 124

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = -3

Query: 251 PAPAQIEQPHARVG--RHRGHHPSSAG 177
           P P Q  +PH+R    RHR  HPS++G
Sbjct: 50  PQPQQQSRPHSRTPPRRHRVRHPSASG 76

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>VID21_ASPFU (Q4WP03) Chromatin modification-related protein vid21|
          Length = 1467

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = -3

Query: 377  PGVENPASSDQTPAQRQRGDVPSRDQKAVTGARIRLQGGKQNPAPAQIEQPHARVGRHRG 198
            PG+    S D T   R+   +  ++Q+ +      LQ  +Q P P Q +QP A+  + + 
Sbjct: 1193 PGMPMQTSPDNTRVMREANRL--QEQQRI------LQSRQQQPQPPQHQQPQAQQAQQQF 1244

Query: 197  HHPSSAG 177
            H+    G
Sbjct: 1245 HNQQQFG 1251

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>MBA2_ECOLI (P07112) Mobilization protein A|
          Length = 708

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 13/92 (14%)
 Frame = -3

Query: 413 GLSASQGTRSPEPGVENPASSDQTPA-QRQRG----DVPSRDQKAVTGARIRLQGGKQNP 249
           G   + G    + G  +PA  +  PA QR  G    + P+ D+  + GA  R+ GG +  
Sbjct: 266 GADRTAGPEHGDTGRRSPAGHEPDPAGQRGAGGGVAESPAPDRGGMGGAGQRVAGGSRRG 325

Query: 248 APAQIEQP--------HARVGRHRGHHPSSAG 177
              + E+P         A   R  G H +  G
Sbjct: 326 EQRRAERPERVAGVALEAMANRDAGFHDAYGG 357

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>IL16_SAISC (O62677) Interleukin-16 precursor (IL-16) (Lymphocyte|
           chemoattractant factor) (LCF)
          Length = 627

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 22/81 (27%), Positives = 32/81 (39%)
 Frame = -3

Query: 422 TAPGLSASQGTRSPEPGVENPASSDQTPAQRQRGDVPSRDQKAVTGARIRLQGGKQNPAP 243
           T P L  + GT    P V  PA S            P+  ++++ G R R    ++ P P
Sbjct: 56  TPPKLETANGT----PKVYRPADSSTVKKGPPVAPKPAWFRQSLKGLRNRASDPRRLPDP 111

Query: 242 AQIEQPHARVGRHRGHHPSSA 180
           A   QP      H G H  ++
Sbjct: 112 ALSVQPVPASREHPGPHTQAS 132

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>NUKM_NEUCR (O47950) NADH-ubiquinone oxidoreductase 19.3 kDa subunit,|
           mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3)
           (Complex I-19.3KD) (CI-19.3KD)
          Length = 226

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -3

Query: 425 RTAPGLSASQGTRSPEPGVENPASSDQTPAQRQRGDVPSRDQKAVTGA 282
           R A   S S  +R    G   PA +    A+R+R +VP   Q+   GA
Sbjct: 25  RAAAVASISSSSRKDATGAVAPAGAQHGIARRERREVPLPSQEGTKGA 72

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>FMN_CHICK (Q05858) Formin (Limb deformity protein)|
          Length = 1213

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
 Frame = -3

Query: 416 PGLSASQGTRSPEPGVENPASSDQTPAQRQRGDVPSRDQKAVTGARIRLQGGKQNPAPA- 240
           PG         P PG+   ++   +   R+    PSR  K +   RI+LQG ++   P  
Sbjct: 738 PGSGLPPPPPPPGPGLFFNSTLSSSQGPRKPAIEPSRPMKPLYWTRIQLQGSRKTAIPTL 797

Query: 239 --QIEQP 225
              +E+P
Sbjct: 798 WESLEEP 804

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>TREF1_HUMAN (Q96PN7) Transcriptional-regulating factor 1|
           (Transcriptional-regulating protein 132) (Zinc finger
           transcription factor TReP-132) (Zinc finger protein
           rapa)
          Length = 1200

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
 Frame = -3

Query: 425 RTAPGLSASQGTRSP-EPGVENPASSDQTPAQRQRGDVPSRDQKAVTGARIRLQG--GKQ 255
           R A  + +S G   P + G+ +PASSD T   R    +P R   + +G  +   G   +Q
Sbjct: 414 RQAQAMLSSHGDLGPPDTGMGDPASSDLT---RVSSTLPHRPLLSPSGIHLNNMGPQHQQ 470

Query: 254 NPAPAQIEQPHARVGRHRGHHPSSAG 177
               A   Q H   GR +   P S+G
Sbjct: 471 LSPSAMWPQMHLPDGRAQPGSPESSG 496

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>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein|
            (Atrophin-1-related protein)
          Length = 1559

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 25/74 (33%), Positives = 29/74 (39%)
 Frame = -1

Query: 343  PQLSGNAETSLLGTRKP*PALELGCREGSKTPHPPRLSSPMLALGATAAITPRRPAGLRP 164
            P LSG +  S+     P PAL+        T HPP    P L L   +   P  PA   P
Sbjct: 940  PHLSGPSPFSMNANLPPPPALKP--LSSLSTHHPPSAHPPPLQLMPQSQPLPSSPA-QPP 996

Query: 163  LLHSCGGKPPPRNS 122
             L      PPP  S
Sbjct: 997  GLTQSQSLPPPAAS 1010

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>SMRD1_MOUSE (Q61466) SWI/SNF-related matrix-associated actin-dependent|
           regulator of chromatin subfamily D member 1 (SWI/SNF
           complex 60 kDa subunit) (60 kDa BRG-1/Brm associated
           factor subunit A) (BRG1-associated factor 60A) (D15KZ1
           protein)
          Length = 476

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 9/83 (10%)
 Frame = -3

Query: 413 GLSASQGT-RSPEPGVENPASSDQTPAQRQRGDVPSRDQKAVTG--------ARIRLQGG 261
           G +  QG  RSP PG   P      P  R     PS       G        A+  +   
Sbjct: 2   GPAPGQGLYRSPMPGAAYPRPG-MLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQS 60

Query: 260 KQNPAPAQIEQPHARVGRHRGHH 192
           ++ PAP QI+Q   +  ++R H+
Sbjct: 61  RKRPAPQQIQQVQQQAVQNRNHN 83

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>SMRD1_HUMAN (Q96GM5) SWI/SNF-related matrix-associated actin-dependent|
           regulator of chromatin subfamily D member 1 (SWI/SNF
           complex 60 kDa subunit) (60 kDa BRG-1/Brm associated
           factor subunit A) (BRG1-associated factor 60A)
          Length = 476

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 9/83 (10%)
 Frame = -3

Query: 413 GLSASQGT-RSPEPGVENPASSDQTPAQRQRGDVPSRDQKAVTG--------ARIRLQGG 261
           G +  QG  RSP PG   P      P  R     PS       G        A+  +   
Sbjct: 2   GPAPGQGLYRSPMPGAAYPRPG-MLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQS 60

Query: 260 KQNPAPAQIEQPHARVGRHRGHH 192
           ++ PAP QI+Q   +  ++R H+
Sbjct: 61  RKRPAPQQIQQVQQQAVQNRNHN 83

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>POLS_RUBVT (P07566) Structural polyprotein [Contains: Nucleocapsid protein C;|
           Membrane glycoprotein E2; Membrane glycoprotein E1]
          Length = 1063

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -3

Query: 296 AVTGARIRLQGGKQNPAPAQIEQPHARVGRHRGHH 192
           AV  AR  LQ      AP  + QP    G+H GHH
Sbjct: 294 AVGTARAGLQPRADMAAPPTLPQPPCAHGQHYGHH 328

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>NPTXR_RAT (O35764) Neuronal pentraxin receptor|
          Length = 494

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 21/61 (34%), Positives = 28/61 (45%)
 Frame = -2

Query: 345 NPSSAATRRRPFSGPESRDRRSN*AAGREAKPRTRPD*AAPCSRWAPPRPSPLVGRRVCD 166
           N S+A+    P  GP+ R   +   AG  A P   P    P +   PP P PL+ R +C 
Sbjct: 42  NASAASAAGAP--GPQ-RSLSALQGAGGSAGPSVLP--GEPAASVFPPPPGPLLSRFLCT 96

Query: 165 P 163
           P
Sbjct: 97  P 97

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>FOXK1_MOUSE (P42128) Forkhead box protein K1 (Myocyte nuclear factor) (MNF)|
          Length = 617

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = -1

Query: 268 REGSKTPHPPRLSSPMLALG--ATAAITPRRPAGLRPLLHSCGGKPPPRNSLIQQVAELP 95
           REGS  PH P L S + ++     +   P  P   +P++ +    P P N + + VA +P
Sbjct: 426 REGSPIPHDPDLGSKLASVPEYRYSQSAPGSPVSAQPVIMAV--PPRPSNLVAKPVAYMP 483

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>Y708_METMA (Q8PYZ0) UPF0284 protein MM0708|
          Length = 349

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = -1

Query: 304 TRKP*PALELGCREGSKTPHPPRLSSPMLALGATAAITPRRPAGLRPLLHS 152
           T KP   + L     +KT H P+LS    A G TA +T   PAG   L+ +
Sbjct: 9   TEKPKKPMFLCVLSSTKTAHIPKLS----AAGKTAELTDYTPAGDAELMET 55

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>MILK1_MOUSE (Q8BGT6) Molecule interacting with Rab13 (MIRab13) (MICAL-like|
           protein 1)
          Length = 870

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 24/87 (27%), Positives = 32/87 (36%), Gaps = 2/87 (2%)
 Frame = -3

Query: 404 ASQGTRSPEPGVENPA--SSDQTPAQRQRGDVPSRDQKAVTGARIRLQGGKQNPAPAQIE 231
           +S  T + EP +E PA   S   PA    G   +        A   L    +   P+  +
Sbjct: 528 SSSHTANAEP-LEPPAVPKSSSDPAVHVPGTPGTSGNSVTPSANSSLSSSGELGQPSGEQ 586

Query: 230 QPHARVGRHRGHHPSSAGGFATPTAFL 150
            P  R     G H +     ATPT FL
Sbjct: 587 MPQVRTKGSAGTHSTKPFSGATPTPFL 613

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>VID21_NEUCR (Q7SBU6) Chromatin modification-related protein vid-21|
          Length = 2189

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
 Frame = -3

Query: 413  GLSASQGT-----RSPEPGVENPASSDQTPAQRQ-RGDVPSRDQKAVTGARIRLQGGKQN 252
            G + SQG      ++P  G        Q   Q Q +G V  + Q  V G   ++QG  Q 
Sbjct: 1796 GQAQSQGQIQGQGQAPGQGQAPGQGHAQGQVQGQVQGQVQGQVQGQVQG---QVQGQVQG 1852

Query: 251  PAPAQIEQPHARVGRH 204
             AP Q++  HA+  RH
Sbjct: 1853 QAPGQVQPQHAQHSRH 1868

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>SPK1_CAEBR (Q61IS6) Serine/threonine-protein kinase spk-1 (EC 2.7.11.1)|
          Length = 771

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = -2

Query: 327 TRRRPFSGPESRDRRSN*AAGREAKPRTRPD*AAPCSRWAPPR--PSPLVGRRVCDPYC 157
           T   PFS PES+        G  A P +    ++P S   P    P+P VG  + DPYC
Sbjct: 469 TTLTPFSDPESK-------IGELASPSSE-FLSSPMSMLPPGGVLPAPPVGPNIADPYC 519

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>NR4A3_HUMAN (Q92570) Orphan nuclear receptor NR4A3 (Nuclear hormone receptor|
           NOR-1) (Neuron-derived orphan receptor 1)
           (Mitogen-induced nuclear orphan receptor)
          Length = 626

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = -3

Query: 320 DVPSRDQKAVTGARIRLQGGKQNPAPAQIEQPHARVGRHRGHHPSSAGGFATP 162
           D P +    V GAR  L   K  P+P     P    G H G+ P++A   + P
Sbjct: 174 DPPMKAVPTVAGARFPLFHFK--PSPPHPPAPSPAGGHHLGYDPTAAAALSLP 224

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>CILP1_PIG (O19112) Cartilage intermediate layer protein 1 (CILP-1) [Contains:|
           Cartilage intermediate layer protein 1 C2] (Fragment)
          Length = 599

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = -3

Query: 356 SSDQTPAQRQRGDVPSRDQKAVTGARIRLQGGKQNPAPAQIEQP 225
           S+  +PA   RG  PSR Q+A +G++ + +G      P   +QP
Sbjct: 553 SARPSPASTVRGRAPSRRQRASSGSQRQPRGVASLRFPGVAQQP 596

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>BRPF3_HUMAN (Q9ULD4) Bromodomain and PHD finger-containing protein 3|
          Length = 1205

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = -1

Query: 274 GCREGSKTPHPPRLSSPMLALGATAAITPRRPAGLRPLLHSCGGKPPPR 128
           G R+ SK P PP L     A   +   +P  P  L+P+  S   KPP R
Sbjct: 825 GDRDDSKLPPPPTLEPTGPAPSLSEQESPPEPPTLKPINDS---KPPSR 870

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>ZN469_HUMAN (Q96JG9) Zinc finger protein 469 (Fragment)|
          Length = 2469

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 11/83 (13%)
 Frame = -3

Query: 425  RTAPGLSASQGTRSPEPGVENPASSDQTPAQRQ----------RGDVPSRDQKAV-TGAR 279
            +  PG S SQG+ SP PG +    S   PA  Q          +   PSR        AR
Sbjct: 2241 KAKPGPS-SQGSGSPRPGTKTGGGSQPQPASGQLQSETATTPAKPSFPSRSPAPERLPAR 2299

Query: 278  IRLQGGKQNPAPAQIEQPHARVG 210
             + +   + P  A  + PH  +G
Sbjct: 2300 AQAKSCTKGPREAGEQGPHGSLG 2322

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>ZN219_HUMAN (Q9P2Y4) Zinc finger protein 219|
          Length = 722

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 23/86 (26%), Positives = 34/86 (39%)
 Frame = -3

Query: 413 GLSASQGTRSPEPGVENPASSDQTPAQRQRGDVPSRDQKAVTGARIRLQGGKQNPAPAQI 234
           G  A  G      G    +S+    A+R R + P  +++ V         G+   + A +
Sbjct: 393 GEGAEPGPGRSFGGFRPLSSALPARARRHRAEEPEEEEEVVEAEEETWARGRSLGSLASL 452

Query: 233 EQPHARVGRHRGHHPSSAGGFATPTA 156
              H R G   GH  S+AG  A  TA
Sbjct: 453 ---HPRPGEGPGHSASAAGAQARSTA 475

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>NHS_HUMAN (Q6T4R5) Nance-Horan syndrome protein (Congenital cataracts and|
           dental anomalies protein)
          Length = 1630

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = -3

Query: 428 RRTAPG--LSASQGTRSPEPGVENPASSDQTPAQRQRGDVPSRDQKAVTGARIRLQGGKQ 255
           RR APG  + AS G+  P P ++ P   D    +    + P+R   A +G          
Sbjct: 17  RRPAPGPAVDASGGSAEPPPPLQPPGRRDLDEVEAPGPEEPARAVPAPSGLP---PPPPP 73

Query: 254 NPAPAQIEQP 225
            PAPA   QP
Sbjct: 74  LPAPADQTQP 83

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>CXX1_HUMAN (O15255) CAAX box protein 1 (Cerebral protein 5)|
          Length = 209

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 4/30 (13%)
 Frame = -2

Query: 228 APCSRWA----PPRPSPLVGRRVCDPYCIL 151
           AP + W     PP PSPL+  R+ D Y IL
Sbjct: 110 APVTHWTDHPLPPLPSPLLPTRLPDDYIIL 139

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>NCOA6_HUMAN (Q14686) Nuclear receptor coactivator 6 (Amplified in breast cancer|
           protein 3) (Cancer-amplified transcriptional coactivator
           ASC-2) (Activating signal cointegrator 2) (ASC-2)
           (Peroxisome proliferator-activated receptor-interacting
           protein) (P
          Length = 2063

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
 Frame = -3

Query: 422 TAPGLSASQG--TRSPEPGVENPASSDQTPAQR----QRGDVPSRDQKAVTGARIRLQGG 261
           TAP + + QG  +R P P ++ P  ++++PA      Q+G   S      T  ++  +  
Sbjct: 400 TAPQMKSLQGGPSRVPTP-LQQPHLTNKSPASSPSSFQQGSPASSPTVNQTQQQMGPRPP 458

Query: 260 KQNPAPAQIEQPHARVGRH 204
           + NP P   +QP +  GR+
Sbjct: 459 QNNPLPQGFQQPVSSPGRN 477

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>ASPX_PAPHA (Q06990) Acrosomal protein SP-10 precursor (Acrosomal vesicle|
           protein 1)
          Length = 285

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 20/77 (25%), Positives = 31/77 (40%)
 Frame = -3

Query: 416 PGLSASQGTRSPEPGVENPASSDQTPAQRQRGDVPSRDQKAVTGARIRLQGGKQNPAPAQ 237
           PG  A     S EP     A  + T  ++  G+ PS +  +   +      G+Q P+  Q
Sbjct: 85  PGEHAESEHASGEPAATGHAEGEHTVGEQPSGEQPSGEHLSGEQSLGEHASGEQ-PSDEQ 143

Query: 236 IEQPHARVGRHRGHHPS 186
           +   HA   +  G H S
Sbjct: 144 LSGEHASGEQPSGEHAS 160

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>ZAR1_RAT (Q7TSX9) Zygote arrest 1 (Oocyte-specific maternal effect factor)|
          Length = 361

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 10/68 (14%)
 Frame = -3

Query: 413 GLSASQGTRSPEPG-------VENPASSD---QTPAQRQRGDVPSRDQKAVTGARIRLQG 264
           G  A  GTR PEPG       V  P S +   Q   Q  +   P  D  +V  A ++ + 
Sbjct: 161 GRPAPTGTREPEPGEVAVMKAVPQPQSEEGDVQAEGQDGQEQPPREDPDSV--AAMQSEP 218

Query: 263 GKQNPAPA 240
           G + P PA
Sbjct: 219 GSEEPPPA 226

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>VID21_CRYNE (Q5KL22) Chromatin modification-related protein VID21|
          Length = 985

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 23/82 (28%), Positives = 30/82 (36%), Gaps = 8/82 (9%)
 Frame = -3

Query: 383  PEPGVENPASSDQTPAQRQRGDVPS--------RDQKAVTGARIRLQGGKQNPAPAQIEQ 228
            P+ GV +P +  +TP     G  PS          Q A  GA+   Q      AP+    
Sbjct: 790  PQLGVSSPFAQSRTPDLPAEGAGPSGINPTPSPAMQAAAIGAQSSPQIATMGRAPSNNVP 849

Query: 227  PHARVGRHRGHHPSSAGGFATP 162
            PH RV       P  +   A P
Sbjct: 850  PHLRVPNAGTSSPQISSPMALP 871

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>IF2_STRCO (Q8CJQ8) Translation initiation factor IF-2|
          Length = 1033

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 25/96 (26%), Positives = 34/96 (35%), Gaps = 11/96 (11%)
 Frame = -3

Query: 428 RRTAPGLSASQGTRSPEPGVENPASSDQTPAQRQRGDVPSRDQKAVTG-------ARIRL 270
           R + PG    Q      PG + P +  Q P  R  G  P  +     G       +  R 
Sbjct: 180 RPSGPGQDRGQQGGQGRPGGQRPGAPAQRPGGRPGGPRPGNNPFTSGGNAGMARPSAPRP 239

Query: 269 QGGKQ----NPAPAQIEQPHARVGRHRGHHPSSAGG 174
           QGG +      AP    +P    G+  G  P + GG
Sbjct: 240 QGGPRPGGPGGAPGGGPRPQGPGGQGGGPRPQAPGG 275

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>LPRE_MYCLE (Q9CC94) Putative lipoprotein lprE precursor|
          Length = 202

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 194 HPSSAGGFATPTAFLWW*TSAEKLANSAGG 105
           +PSS  G AT   F W   + E ++N AGG
Sbjct: 173 YPSSIDGLATAVRFHWNGNAVELISNIAGG 202


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,641,113
Number of Sequences: 219361
Number of extensions: 1329230
Number of successful extensions: 5782
Number of sequences better than 10.0: 72
Number of HSP's better than 10.0 without gapping: 5243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5760
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result