>PEX6_GLOLA (Q9C1E9) Peroxisomal biogenesis factor 6 (Peroxin-6) (ClaPEX6)|
          Length = 1388

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -3

Query: 78   VVSGKEAGEGRSV*GFWDGTGGPD 7
            VV+GK  G+G++V GF DGT   D
Sbjct: 1361 VVNGKGKGKGKAVAGFQDGTASDD 1384

>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)|
           (RNA-binding motif protein, X chromosome)
          Length = 388

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
 Frame = -2

Query: 229 PLPGKHIARDAAEEPEDGRRRSEEQAV----VDGRRELPRQIQRVRPPRNLGFACRVGEG 62
           P   K +ARD   +  DG+    EQA       GRR  P   +   PPR L    R G G
Sbjct: 59  PADAKDVARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGL----RGGSG 114

Query: 61  SRRG 50
             RG
Sbjct: 115 GTRG 118

>RPOC1_PANGI (Q68S15) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP)|
           (Plastid-encoded RNA polymerase beta' subunit) (RNA
           polymerase beta' subunit)
          Length = 682

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -3

Query: 171 DAAKSRQ**TAAGSCRVRSSACDRRETLDSPVVSGKEAGEGRSV*GFWD 25
           D  ++R+  T AG+ R + +  D R  +DS +V  KE GE       W+
Sbjct: 185 DTFRNREISTGAGAIREQLADLDLRIIIDSSLVEWKELGEDGPTGNEWE 233

>LEU1_STRCO (O31046) 2-isopropylmalate synthase (EC 2.3.3.13)|
           (Alpha-isopropylmalate synthase) (Alpha-IPM synthetase)
          Length = 573

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +3

Query: 3   CNPVLQSHPRNPRRTVPRLLPSPTRQANPRFRGGRTRWI*RGSSRR 140
           C  V+ ++   P R +   LP+   ++ P     R  W+ R  SRR
Sbjct: 200 CEAVMDTYQPGPGREIILNLPATVERSTPSTHADRFEWMGRNLSRR 245

>RS5_RHOS4 (Q3J5Q5) 30S ribosomal protein S5|
          Length = 187

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = -2

Query: 205 RDAAEEPEDGRRRSEEQAVVDGRRELPRQIQRVRPPRNLGFACRVGEGSRRGTVRLG 35
           R+   +  D R R E     D    + R  + V+  +  GFA  V  G +RG V  G
Sbjct: 4   RENRRDRRDDRSREETPEFADRLVAINRVSKTVKGGKRFGFAALVVVGDQRGRVGFG 60

>NEST_HUMAN (P48681) Nestin|
          Length = 1618

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = -2

Query: 226  LPGKHIARDAAEEPEDGRRRSEEQAVVDGRRELPRQIQRVRPPRNLG 86
            LPGK  +RD  E P +GR  SE +A        PR  +   P   LG
Sbjct: 1157 LPGK--SRDPWEPPREGREESEAEA--------PRGAEEAFPAETLG 1193

>ABP1_YEAST (P15891) Actin-binding protein|
          Length = 591

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -2

Query: 229 PLPGKHIARDAAEEPED 179
           PLPG HI  D  EEPE+
Sbjct: 417 PLPGMHIEADNEEEPEE 433


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,485,957
Number of Sequences: 219361
Number of extensions: 503660
Number of successful extensions: 2103
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2103
length of database: 80,573,946
effective HSP length: 54
effective length of database: 68,728,452
effective search space used: 1649482848
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)