ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl11h10 |
|---|---|
| Clone Library Name | barley_pub |
>ZN449_HUMAN (Q6P9G9) Zinc finger protein 449 (Zinc finger and SCAN| domain-containing protein 19) Length = 518 Score = 33.1 bits (74), Expect = 0.21 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 3/47 (6%) Frame = +2 Query: 11 HHCPPCTKCI---SKGTGTHRLCSSCSALPCPRCRTREQRRGEMLLH 142 H CP C KC S+ TG R+ S CP C R R ++ H Sbjct: 323 HRCPQCGKCFARKSQLTGHQRIHSGEEPHKCPECGKRFLRSSDLYRH 369
>ZFP13_MOUSE (P10754) Zinc finger protein 13 (Zfp-13) (Krox-8 protein)| Length = 512 Score = 33.1 bits (74), Expect = 0.21 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%) Frame = +2 Query: 11 HHCPPCTKCISKGTG--TH-RLCSSCSALPCPRCRTREQRRGEMLLH 142 H CP C+KC ++ + TH R + PCP C +R ++ H Sbjct: 378 HKCPICSKCFTQSSALVTHQRTHTGVKPYPCPECGKCFSQRSNLIAH 424
>ZN205_HUMAN (O95201) Zinc finger protein 205 (Zinc finger protein 210)| Length = 504 Score = 32.7 bits (73), Expect = 0.28 Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 3/47 (6%) Frame = +2 Query: 11 HHCPPCTKCISKGTG--TH-RLCSSCSALPCPRCRTREQRRGEMLLH 142 H CP C KC ++ + TH R + PCP C +R ++ H Sbjct: 370 HKCPICAKCFTQSSALVTHQRTHTGVKPYPCPECGKCFSQRSNLIAH 416
>LIPA_BUCAI (P57357) Lipoyl synthase (EC 2.8.1.-) (Lipoic acid synthase)| (Lipoate synthase) (Lipoyl-acyl-carrier protein synthase) (Sulfur insertion protein lipA) (Lip-syn) Length = 323 Score = 30.8 bits (68), Expect = 1.1 Identities = 11/30 (36%), Positives = 15/30 (50%) Frame = +2 Query: 14 HCPPCTKCISKGTGTHRLCSSCSALPCPRC 103 HCP ++C + GT T + S CP C Sbjct: 69 HCPNLSECFNNGTATFMILGSICTRNCPFC 98
>SINA3_ARATH (Q84JL3) Ubiquitin ligase SINAT3 (EC 6.3.2.-) (Seven in absentia| homolog 3) Length = 326 Score = 29.3 bits (64), Expect = 3.1 Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 4/43 (9%) Frame = +2 Query: 17 CPPCTKC----ISKGTGTHRLCSSCSALPCPRCRTREQRRGEM 133 CP CT I + H LCS+C A RC T Q G++ Sbjct: 63 CPVCTNSMYPPIHQCHNGHTLCSTCKARVHNRCPTCRQELGDI 105
>LIPA_WIGBR (Q8D325) Lipoyl synthase (EC 2.8.1.-) (Lipoic acid synthase)| (Lipoate synthase) (Lipoyl-acyl-carrier protein synthase) (Sulfur insertion protein lipA) (Lip-syn) Length = 316 Score = 28.9 bits (63), Expect = 4.1 Identities = 11/35 (31%), Positives = 15/35 (42%) Frame = +2 Query: 17 CPPCTKCISKGTGTHRLCSSCSALPCPRCRTREQR 121 CP +C ++GT T + S CP C R Sbjct: 71 CPNLAECFNRGTATFMILGSICTRRCPFCNVSSGR 105
>MT2_CALSI (P55950) Metallothionein-2B (MT-2B) (Metallothionein-IIB) (MT-IIB)| [Contains: Metallothionein-2A (MT-2A) (Metallothionein-IIA) (MT-IIA)] Length = 58 Score = 28.9 bits (63), Expect = 4.1 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%) Frame = +2 Query: 17 CPPCTKCISKGTGTHR-LCSSCSALPCPRC 103 CPPC KC S+ T + CS + PC C Sbjct: 28 CPPCDKCSSECKCTSKEECSKTCSKPCSCC 57
>TNR6_MACMU (Q9BDP2) Tumor necrosis factor receptor superfamily member 6| precursor (FASLG receptor) (Apoptosis-mediating surface antigen FAS) (Apo-1 antigen) (CD95 antigen) Length = 333 Score = 28.5 bits (62), Expect = 5.3 Identities = 11/36 (30%), Positives = 16/36 (44%) Frame = +2 Query: 14 HCPPCTKCISKGTGTHRLCSSCSALPCPRCRTREQR 121 HC PCTKC H + C+ +C+ + R Sbjct: 142 HCDPCTKC------KHGIIEECTLTSNTKCKEEDSR 171
>ARI2_CAEEL (Q22431) Probable protein ariadne-2 (Ari-2)| Length = 482 Score = 28.5 bits (62), Expect = 5.3 Identities = 12/30 (40%), Positives = 14/30 (46%) Frame = +2 Query: 17 CPPCTKCISKGTGTHRLCSSCSALPCPRCR 106 CP C CI K G C+ + C RCR Sbjct: 287 CPQCHSCIEKAGG-------CNHIQCTRCR 309
>TNR6_MACNE (Q9BDN0) Tumor necrosis factor receptor superfamily member 6| precursor (FASLG receptor) (Apoptosis-mediating surface antigen FAS) (Apo-1 antigen) (CD95 antigen) Length = 331 Score = 28.5 bits (62), Expect = 5.3 Identities = 11/36 (30%), Positives = 16/36 (44%) Frame = +2 Query: 14 HCPPCTKCISKGTGTHRLCSSCSALPCPRCRTREQR 121 HC PCTKC H + C+ +C+ + R Sbjct: 142 HCDPCTKC------KHGIIEECTLTSNTKCKEEDSR 171
>TNR6_MACFA (Q9TSN4) Tumor necrosis factor receptor superfamily member 6| precursor (FASLG receptor) (Apoptosis-mediating surface antigen FAS) (Apo-1 antigen) (CD95 antigen) Length = 331 Score = 28.5 bits (62), Expect = 5.3 Identities = 11/36 (30%), Positives = 16/36 (44%) Frame = +2 Query: 14 HCPPCTKCISKGTGTHRLCSSCSALPCPRCRTREQR 121 HC PCTKC H + C+ +C+ + R Sbjct: 142 HCDPCTKC------EHGIIEECTLTSNTKCKEEDSR 171
>TNR6_CERTO (Q9BDN4) Tumor necrosis factor receptor superfamily member 6| precursor (FASLG receptor) (Apoptosis-mediating surface antigen FAS) (Apo-1 antigen) (CD95 antigen) Length = 331 Score = 28.5 bits (62), Expect = 5.3 Identities = 11/36 (30%), Positives = 16/36 (44%) Frame = +2 Query: 14 HCPPCTKCISKGTGTHRLCSSCSALPCPRCRTREQR 121 HC PCTKC H + C+ +C+ + R Sbjct: 142 HCDPCTKC------KHGIIEECTLTSNTKCKEEDSR 171
>ZN575_MACFA (Q9GM03) Zinc finger protein 575| Length = 260 Score = 28.5 bits (62), Expect = 5.3 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 3/47 (6%) Frame = +2 Query: 11 HHCPPCTKCISKGT--GTHRLC-SSCSALPCPRCRTREQRRGEMLLH 142 H CP C K S + HRL S PCP C R ++ H Sbjct: 106 HPCPDCPKAFSYPSKLAAHRLTHSGARPHPCPHCPKAFGHRSKLAAH 152
>MT_ASTFL (P55951) Metallothionein (MT)| Length = 58 Score = 28.5 bits (62), Expect = 5.3 Identities = 10/29 (34%), Positives = 15/29 (51%) Frame = +2 Query: 17 CPPCTKCISKGTGTHRLCSSCSALPCPRC 103 C +C + G T +C+SC PC +C Sbjct: 6 CNDVCECAAGGCKTGCVCTSCRCSPCDKC 34
>ZCHC4_XENTR (Q66IH9) Zinc finger CCHC domain-containing protein 4| Length = 487 Score = 28.5 bits (62), Expect = 5.3 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 2/34 (5%) Frame = +2 Query: 14 HCPPCTKCISKGTGTHRLCSSCS--ALPCPRCRT 109 HC C KC+ K + TH CS+C+ ALP C T Sbjct: 396 HCTQCNKCV-KPSWTH--CSACNHCALPDHPCGT 426
>ZN575_HUMAN (Q86XF7) Zinc finger protein 575| Length = 245 Score = 28.5 bits (62), Expect = 5.3 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 3/47 (6%) Frame = +2 Query: 11 HHCPPCTKCISKGT--GTHRLC-SSCSALPCPRCRTREQRRGEMLLH 142 H CP C K S + HRL S PCP C R ++ H Sbjct: 91 HPCPDCPKAFSYPSKLAAHRLTHSGARPHPCPHCPKSFGHRSKLAAH 137
>RS2_SCHPO (O74892) 40S ribosomal protein S2| Length = 253 Score = 28.5 bits (62), Expect = 5.3 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%) Frame = -3 Query: 99 RGQGR--AEHEEHNRWVPVPLLMHLVQGGQ 16 RG+GR A+ +E WVPV L LV+ G+ Sbjct: 19 RGRGRRGAKRDEEKEWVPVTKLGRLVKAGK 48
>LIPA_NEIMB (Q9JZA5) Lipoyl synthase (EC 2.8.1.-) (Lipoic acid synthase)| (Lipoate synthase) (Lipoyl-acyl-carrier protein synthase) (Sulfur insertion protein lipA) (Lip-syn) Length = 327 Score = 28.1 bits (61), Expect = 6.9 Identities = 11/29 (37%), Positives = 13/29 (44%) Frame = +2 Query: 17 CPPCTKCISKGTGTHRLCSSCSALPCPRC 103 CP +C SKGT T + CP C Sbjct: 71 CPNIGECFSKGTATFMIMGDICTRRCPFC 99
>LIPA_NEIMA (Q9JUC8) Lipoyl synthase (EC 2.8.1.-) (Lipoic acid synthase)| (Lipoate synthase) (Lipoyl-acyl-carrier protein synthase) (Sulfur insertion protein lipA) (Lip-syn) Length = 327 Score = 28.1 bits (61), Expect = 6.9 Identities = 11/29 (37%), Positives = 13/29 (44%) Frame = +2 Query: 17 CPPCTKCISKGTGTHRLCSSCSALPCPRC 103 CP +C SKGT T + CP C Sbjct: 71 CPNIGECFSKGTATFMIMGDICTRRCPFC 99
>SINA5_ARATH (Q8S3N1) Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven in absentia| homolog 5) Length = 309 Score = 28.1 bits (61), Expect = 6.9 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 4/43 (9%) Frame = +2 Query: 17 CPPCTKC----ISKGTGTHRLCSSCSALPCPRCRTREQRRGEM 133 CP CT I + H LCS+C + RC T Q G++ Sbjct: 46 CPVCTNSMYPPIHQCHNGHTLCSTCKSRVHNRCPTCRQELGDI 88
>LIPA_CHRVO (Q7NTF9) Lipoyl synthase (EC 2.8.1.-) (Lipoic acid synthase)| (Lipoate synthase) (Lipoyl-acyl-carrier protein synthase) (Sulfur insertion protein lipA) (Lip-syn) Length = 315 Score = 28.1 bits (61), Expect = 6.9 Identities = 11/29 (37%), Positives = 13/29 (44%) Frame = +2 Query: 17 CPPCTKCISKGTGTHRLCSSCSALPCPRC 103 CP +C SKGT T + CP C Sbjct: 68 CPNIGECFSKGTATFMIMGDICTRRCPFC 96
>ARI2_HUMAN (O95376) Protein ariadne-2 homolog (ARI-2) (Triad1 protein)| Length = 493 Score = 28.1 bits (61), Expect = 6.9 Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 1/30 (3%) Frame = +2 Query: 17 CPPCTKCISKGTG-THRLCSSCSALPCPRC 103 CP C CI K G H CS C C C Sbjct: 297 CPKCNICIEKNGGCNHMQCSKCKHDFCWMC 326
>SN1L2_MOUSE (Q8CFH6) Serine/threonine-protein kinase SNF1-like kinase 2 (EC| 2.7.11.1) (Salt-inducible kinase 2) Length = 931 Score = 28.1 bits (61), Expect = 6.9 Identities = 12/19 (63%), Positives = 12/19 (63%) Frame = +1 Query: 7 PPPLPSLYQVHQQGDRHPP 63 PPPLPS Q HQQ PP Sbjct: 811 PPPLPSQLQQHQQPPPPPP 829
>ARI2_MOUSE (Q9Z1K6) Protein ariadne-2 homolog (ARI-2) (Triad1 protein)| (UbcM4-interacting protein 48) Length = 492 Score = 28.1 bits (61), Expect = 6.9 Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 1/30 (3%) Frame = +2 Query: 17 CPPCTKCISKGTG-THRLCSSCSALPCPRC 103 CP C CI K G H CS C C C Sbjct: 296 CPKCNICIEKNGGCNHMQCSKCKHDFCWMC 325
>UVRA_BRUSU (Q8G0I9) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 974 Score = 28.1 bits (61), Expect = 6.9 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = -2 Query: 64 PVGACPLADALGTRRAV 14 P GACP D LGT++A+ Sbjct: 294 PFGACPTCDGLGTQQAI 310
>UVRA_BRUME (Q8YHC4) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 974 Score = 28.1 bits (61), Expect = 6.9 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = -2 Query: 64 PVGACPLADALGTRRAV 14 P GACP D LGT++A+ Sbjct: 294 PFGACPTCDGLGTQQAI 310
>UVRA_BRUAB (P0C0Z2) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 974 Score = 28.1 bits (61), Expect = 6.9 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = -2 Query: 64 PVGACPLADALGTRRAV 14 P GACP D LGT++A+ Sbjct: 294 PFGACPTCDGLGTQQAI 310
>UVRA_BRUA2 (Q2YPX5) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 974 Score = 28.1 bits (61), Expect = 6.9 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = -2 Query: 64 PVGACPLADALGTRRAV 14 P GACP D LGT++A+ Sbjct: 294 PFGACPTCDGLGTQQAI 310
>UVRA_RHILO (Q98M36) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 973 Score = 28.1 bits (61), Expect = 6.9 Identities = 10/17 (58%), Positives = 13/17 (76%) Frame = -2 Query: 64 PVGACPLADALGTRRAV 14 P GACP D LG++RA+ Sbjct: 293 PFGACPTCDGLGSQRAI 309
>LIPA_BUCBP (Q89AL7) Lipoyl synthase (EC 2.8.1.-) (Lipoic acid synthase)| (Lipoate synthase) (Lipoyl-acyl-carrier protein synthase) (Sulfur insertion protein lipA) (Lip-syn) Length = 314 Score = 28.1 bits (61), Expect = 6.9 Identities = 10/29 (34%), Positives = 14/29 (48%) Frame = +2 Query: 17 CPPCTKCISKGTGTHRLCSSCSALPCPRC 103 CP +C ++GT T + S CP C Sbjct: 72 CPNLAECFNRGTATFMILGSICTRRCPFC 100
>ZN524_HUMAN (Q96C55) Zinc finger protein 524| Length = 264 Score = 27.7 bits (60), Expect = 9.0 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 3/47 (6%) Frame = +2 Query: 11 HHCPPCTKCISKGTGTHRLCSSCSAL---PCPRCRTREQRRGEMLLH 142 H C C K + + R C+ + L CP C R + GE+ H Sbjct: 142 HQCKVCGKTFKRSSHLRRHCNIHAGLRPFRCPLCPRRFREAGELAHH 188
>MUC1_YEAST (P08640) Mucin-like protein 1 precursor| Length = 1367 Score = 27.7 bits (60), Expect = 9.0 Identities = 13/32 (40%), Positives = 16/32 (50%) Frame = +2 Query: 2 PYHHHCPPCTKCISKGTGTHRLCSSCSALPCP 97 P HH PCTK K T T + C+ + P P Sbjct: 287 PPHHDTTPCTK---KKTTTSKTCTKKTTTPVP 315
>DP87_DICDI (Q04503) Prespore protein DP87 precursor| Length = 555 Score = 27.7 bits (60), Expect = 9.0 Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 5/34 (14%) Frame = +2 Query: 11 HHCPPCTKCISKGTGTHRLCSS-----CSALPCP 97 H CPP + C + G H L ++ C CP Sbjct: 336 HRCPPGSSCFNSRNGPHCLANNVFPQLCKVTQCP 369 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,321,614 Number of Sequences: 219361 Number of extensions: 371002 Number of successful extensions: 1909 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 1776 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1902 length of database: 80,573,946 effective HSP length: 26 effective length of database: 74,870,560 effective search space used: 1796893440 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
