Clone Information

BLAST Search Result

Clone Name	bastl11h04
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)	31	0.62
2	MAST3_HUMAN (O60307) Microtubule-associated serine/threonine-pro...	31	0.62
3	LHX3_HUMAN (Q9UBR4) LIM/homeobox protein Lhx3	31	0.81
4	RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats prote...	31	0.81
5	3BP2_MOUSE (Q06649) SH3 domain-binding protein 2 (3BP-2)	31	0.81
6	PROA_BARQU (Q6G0S6) Gamma-glutamyl phosphate reductase (GPR) (EC...	30	1.1
7	Y975_TREPA (O83940) Hypothetical UPF0011 protein TP0975	30	1.4
8	GRIN1_MOUSE (Q3UNH4) G protein-regulated inducer of neurite outg...	30	1.4
9	LHX3_MOUSE (P50481) LIM/homeobox protein Lhx3 (Homeobox protein ...	29	2.4
10	ANI3_CAEEL (Q9XWN6) Anillin-like protein 3	29	2.4
11	LAMBV_CHICK (Q01636) Laminin beta-1 chain variant (Laminin beta-...	29	2.4
12	TRAT1_MOUSE (Q3UU67) T-cell receptor-associated transmembrane ad...	29	3.1
13	ALX4_MOUSE (O35137) Homeobox protein aristaless-like 4 (ALX-4)	29	3.1
14	IF2_DESPS (Q6AJY4) Translation initiation factor IF-2	29	3.1
15	ALX4_HUMAN (Q9H161) Homeobox protein aristaless-like 4	29	3.1
16	ECR_BOMMO (P49881) Ecdysone receptor (Ecdysteroid receptor) (20-...	29	3.1
17	SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1	28	4.0
18	RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats pro...	28	4.0
19	SUUR_DROER (P59597) Protein suppressor of underreplication	28	5.3
20	SEM1A_TRICF (Q26972) Semaphorin-1A precursor (Semaphorin-I)	28	5.3
21	GRIN1_HUMAN (Q7Z2K8) G protein-regulated inducer of neurite outg...	28	5.3
22	CN092_HUMAN (O94842) Epidermal Langerhans cell protein LCP1	28	6.9
23	RGS3_MOUSE (Q9DC04) Regulator of G-protein signaling 3 (RGS3) (C...	28	6.9
24	GUAA_CLOTE (Q891G7) GMP synthase [glutamine-hydrolyzing] (EC 6.3...	28	6.9
25	CIC_MOUSE (Q924A2) Protein capicua homolog	28	6.9
26	NACAM_MOUSE (P70670) Nascent polypeptide-associated complex alph...	28	6.9
27	ARSL_CENAS (Q8GGJ6) Arsenite oxidase large subunit (EC 1.20.98.1)	28	6.9
28	GATB_BRAJA (Q89K31) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransfe...	27	9.0
29	CCNE3_XENLA (O42575) G1/S-specific cyclin-E3	27	9.0
30	BLAC_NOCLA (Q06316) Beta-lactamase precursor (EC 3.5.2.6) (Penic...	27	9.0
31	Y1489_LEIXX (Q6AE99) UPF0109 protein Lxx14890	27	9.0
32	SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1...	27	9.0
33	ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (E...	27	9.0
34	SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1	27	9.0
35	INO80_ASPFU (Q4WTV7) Putative DNA helicase ino80 (EC 3.6.1.-)	27	9.0
36	STS_MOUSE (P50427) Steryl-sulfatase precursor (EC 3.1.6.2) (Ster...	27	9.0
37	KCNKC_RAT (Q9ERS1) Potassium channel subfamily K member 12 (Tand...	27	9.0
38	AMYG_RHIOR (P07683) Glucoamylase 1 precursor (EC 3.2.1.3) (Gluc ...	27	9.0
39	ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)	27	9.0
40	ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2	27	9.0
41	ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (E...	27	9.0

>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)|
          Length = 5179

 Score = 31.2 bits (69), Expect = 0.62
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +2

Query: 14   SRPRQTRSRKSPARTHTKNQITPL*TPPRKTNRLPPVACVNPP 142
            S P  T +   P  T +    TP+ TPP  T  LPP    +PP
Sbjct: 1485 SPPTTTTTTPPPTTTPSPPMTTPI-TPPASTTTLPPTTTPSPP 1526



 Score = 30.8 bits (68), Expect = 0.81
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +2

Query: 14   SRPRQTRSRKSPARTHTKNQITPL*TPPRKTNRLPPVACVNPP 142
            S P  T +   P  T +    TP+ TPP  T  LPP    +PP
Sbjct: 1603 SPPTTTTTTPPPTTTPSPPTTTPI-TPPTSTTTLPPTTTPSPP 1644



 Score = 30.8 bits (68), Expect = 0.81
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +2

Query: 14   SRPRQTRSRKSPARTHTKNQITPL*TPPRKTNRLPPVACVNPP 142
            S P  T +   P  T +    TP+ TPP  T  LPP    +PP
Sbjct: 1524 SPPTTTTTTPPPTTTPSPPTTTPI-TPPTSTTTLPPTTTPSPP 1565

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>MAST3_HUMAN (O60307) Microtubule-associated serine/threonine-protein kinase 3 (EC|
            2.7.11.1)
          Length = 1309

 Score = 31.2 bits (69), Expect = 0.62
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = +3

Query: 15   AAHDKPA----LENLLPEPTPKT-KSRHFKLLPVKPIACPPSRALIRRIPTP 155
            A H +P+    L   L  P PKT + +    +P  P+ACPP  A   R P+P
Sbjct: 1153 AGHTRPSSLHGLAAKLGPPRPKTGRRKSTSSIPPSPLACPPISAPPPRSPSP 1204

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>LHX3_HUMAN (Q9UBR4) LIM/homeobox protein Lhx3|
          Length = 397

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 87  KLLPVKPIACPPSRALIRRIPTPRACVRSFISPDTGKG 200
           +L P  P   PPS A  + +P P+  + S + PDT  G
Sbjct: 308 ELRPGSPYGVPPSPAAPQSLPGPQPLLSSLVYPDTSLG 345

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>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein|
           (Atrophin-1-related protein)
          Length = 1559

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 20  PRQTRSRKSPARTHTKNQITPL*TPPRKTNRLPPVACVN-PPDPNPA 157
           P QT+S  +PA  HT  Q TP   PPR  +  PP+  +  PP  N A
Sbjct: 784 PNQTQSTVAPA-AHTLIQQTPTLHPPRLPSPHPPLQPMTAPPSQNSA 829

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>3BP2_MOUSE (Q06649) SH3 domain-binding protein 2 (3BP-2)|
          Length = 559

 Score = 30.8 bits (68), Expect = 0.81
 Identities = 17/54 (31%), Positives = 28/54 (51%)
 Frame = +3

Query: 24  DKPALENLLPEPTPKTKSRHFKLLPVKPIACPPSRALIRRIPTPRACVRSFISP 185
           +KP    +  EP+P+  +   K  PV P+A  P    ++++P P A VR  + P
Sbjct: 354 NKPKFLKIAEEPSPREAA---KFAPVPPVAPRPP---VQKMPMPEATVRPAVLP 401

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>PROA_BARQU (Q6G0S6) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)|
           (Glutamate-5-semialdehyde dehydrogenase)
           (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA
           dehydrogenase)
          Length = 412

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = -3

Query: 211 LACLPFPVSGLMNERTHARGVGIRRINARDGGQAIGFTGR 92
           +ACLP PV  +M+E T   G+ IRR+    G   I +  R
Sbjct: 82  VACLPDPVGQVMSEWTRPNGLHIRRVRTPLGVIGIIYESR 121

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>Y975_TREPA (O83940) Hypothetical UPF0011 protein TP0975|
          Length = 274

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
 Frame = +3

Query: 123 SRALIRRIPTPRACVRSFISPDTGKGRQARSRER-RPSD 236
           +R LI  + TP   + +F+SP+ G+GRQ+  R R RP +
Sbjct: 64  ARRLIHFLSTP---ISAFLSPEKGRGRQSARRTRARPGE 99

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>GRIN1_MOUSE (Q3UNH4) G protein-regulated inducer of neurite outgrowth 1 (GRIN1)|
          Length = 932

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
 Frame = +3

Query: 15  AAHDKPALENLLPEPTPKTKSRHFKLLPVKPIACPPSRALIRRIPTPRACVR---SFISP 185
           AA   P+ E   P P P+T+  +F   P      PP R         +ACV    S +SP
Sbjct: 687 AAQKSPSAEAAAPPPGPRTRD-NFTKAPSWDAGAPPPREDAGTQAGAQACVSVAVSPMSP 745

Query: 186 DTGKGRQARSRERRP 230
             G G  A S +  P
Sbjct: 746 QDGAGGPAFSFQAAP 760

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>LHX3_MOUSE (P50481) LIM/homeobox protein Lhx3 (Homeobox protein LIM-3)|
           (Homeobox protein P-LIM) (LIM homeobox protein 3)
          Length = 400

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 87  KLLPVKPIACPPSRALIRRIPTPRACVRSFISPDT 191
           +L P  P   PPS A  + +P P+  + S + PDT
Sbjct: 311 ELRPGSPYGIPPSPAAPQSLPGPQPLLSSLVYPDT 345

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>ANI3_CAEEL (Q9XWN6) Anillin-like protein 3|
          Length = 709

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +3

Query: 39  ENLLPEPTPKTKSRHFKLLPVKPIACPPSRALIRRIPTPRACVRSFIS 182
           +++ P P P   S+ ++ +P   +  PPS A  R+ P PR  +R  ++
Sbjct: 7   KSMPPTPVPIGSSQFYRWMPHPIVDTPPSDATWRK-PVPRGRIRDLVA 53

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>LAMBV_CHICK (Q01636) Laminin beta-1 chain variant (Laminin beta-1-2 chain)|
           (Fragment)
          Length = 198

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = +2

Query: 29  TRSRKSPARTHTKNQITPL*TPPRKTNRLPPVACVNPPD--PNPACVRA 169
           T +R  P R H   +      PP    R PP    +PP   P PA VRA
Sbjct: 21  THARPDPTRRHPDPESR---APPHARPRSPPPPAPSPPPLPPRPAAVRA 66

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>TRAT1_MOUSE (Q3UU67) T-cell receptor-associated transmembrane adapter 1 (T-cell|
           receptor-interacting molecule) (TRIM)
          Length = 187

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
 Frame = +3

Query: 36  LENLLPEPTPKTKSRHFKLLPVKPIACPPSRALIRRIPT-PRACVRSFISPDTGKGRQAR 212
           LEN++PEP  +      K  P +  + P   A   ++P   + C  S      GK R+ R
Sbjct: 67  LENIIPEPLDENCYEQMKGRPQRSASDPQEVAAPAQVPAEAQMCYASLDHSVKGKRRRPR 126

Query: 213 SRERRPSD 236
            +    SD
Sbjct: 127 KQNTNVSD 134

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>ALX4_MOUSE (O35137) Homeobox protein aristaless-like 4 (ALX-4)|
          Length = 399

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +2

Query: 116 PPVACVNPPDPNPACVRAFVH*PRHG 193
           P  ACV P DP PAC+    H P  G
Sbjct: 305 PVPACVVPCDPVPACMSPHAHPPGSG 330

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>IF2_DESPS (Q6AJY4) Translation initiation factor IF-2|
          Length = 939

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 31  PLSKISCPNPHQKPNHATLNSSP*NQSPAPRRVR*SAGSQPRVRA 165
           P+ +     P +KP    +N SP   +P+P R   SAG  P+  A
Sbjct: 242 PIQREEPSRPRRKPTRPPVNRSPRPSTPSPNR---SAGGPPKPAA 283

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>ALX4_HUMAN (Q9H161) Homeobox protein aristaless-like 4|
          Length = 411

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = +2

Query: 116 PPVACVNPPDPNPACVRAFVH*PRHG 193
           P  ACV P DP PAC+    H P  G
Sbjct: 317 PVPACVVPCDPVPACMSPHAHPPGSG 342

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>ECR_BOMMO (P49881) Ecdysone receptor (Ecdysteroid receptor)|
           (20-hydroxy-ecdysone receptor) (20E receptor) (EcRH)
          Length = 606

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 21/79 (26%), Positives = 37/79 (46%)
 Frame = +2

Query: 2   EESRSRPRQTRSRKSPARTHTKNQITPL*TPPRKTNRLPPVACVNPPDPNPACVRAFVH* 181
           E S+++ RQ + +        K  + P+ T   + + +PP+   +PP P  A +   V  
Sbjct: 280 EPSKNKDRQRQKKD-------KGILLPVSTTTVE-DHMPPIMQCDPPPPEAARIHEVV-- 329

Query: 182 PRHGKRKAGEVKREKTVRP 238
           PR+   K  E  R+K + P
Sbjct: 330 PRYLSEKLMEQNRQKNIPP 348

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>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 18/52 (34%), Positives = 22/52 (42%)
 Frame = +3

Query: 3   RRVGAAHDKPALENLLPEPTPKTKSRHFKLLPVKPIACPPSRALIRRIPTPR 158
           RR  +    PA     P P P  + R    LP +    PP R   RR P+PR
Sbjct: 539 RRRRSPSPPPARRRRSPSPPPPPRRRRSPSLPRRRSPSPPPR---RRSPSPR 587

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>RERE_MOUSE (Q80TZ9) Arginine-glutamic acid dipeptide repeats protein|
           (Atrophin-2)
          Length = 1558

 Score = 28.5 bits (62), Expect = 4.0
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = +2

Query: 20  PRQTRSRKSPARTHTKNQITPL*TPPRKTNRLPPVACVNPPDPNPACVRAFVH*PRHGKR 199
           P QT+S  +PA  HT  Q  P   PPR  +  PP+  +  P P+ +  +       HG+ 
Sbjct: 785 PNQTQSTVAPA-AHTHIQQAPTLHPPRLPSPHPPLQPMTAP-PSQSSAQPHPQPSLHGQG 842

Query: 200 KAG 208
             G
Sbjct: 843 PPG 845

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>SUUR_DROER (P59597) Protein suppressor of underreplication|
          Length = 962

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +3

Query: 60  TPKTKSRHFKLLPVKPIACPPSRALIRRIPTPRACVRSFISPDTGKGRQARSRERRPSD 236
           TPKT+  + +LL V   A           PTP     + I+P T    + ++R ++P D
Sbjct: 418 TPKTRRLNVRLLRVSLDALST--------PTPSGATTAIITPKTEPSARRKNRTKQPMD 468

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>SEM1A_TRICF (Q26972) Semaphorin-1A precursor (Semaphorin-I)|
          Length = 712

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 30  PALENLLPEPTPKTKSRHFKLLPVKPIACPPSRALIRRIP 149
           P  +NL+PEP P    R  ++LP K +    + +L+  +P
Sbjct: 343 PVPQNLVPEPRPGQCVRDSRILPDKNVNFIKTHSLMEDVP 382

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>GRIN1_HUMAN (Q7Z2K8) G protein-regulated inducer of neurite outgrowth 1 (GRIN1)|
          Length = 1008

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 3/74 (4%)
 Frame = +3

Query: 18  AHDKPALENLLPEPTPKTKSRHFKLLPVKPIACPPSRALIRRIPTPRACVR---SFISPD 188
           A   P  E   P P P+T+    K    +  A PP R         +ACV    S +SP 
Sbjct: 773 AERSPCPEAAAPPPGPRTRDNFTKAPSWEASAPPPPREDAGTQAGAQACVSVAVSPMSPQ 832

Query: 189 TGKGRQARSRERRP 230
            G G  A S +  P
Sbjct: 833 DGAGGSAFSFQAAP 846

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>CN092_HUMAN (O94842) Epidermal Langerhans cell protein LCP1|
          Length = 621

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 92  PPRKTNRLPPVACVNPPDPNPACV 163
           PP +T   PP+A V+P  P PA +
Sbjct: 309 PPSQTPSPPPMATVDPASPAPASI 332

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>RGS3_MOUSE (Q9DC04) Regulator of G-protein signaling 3 (RGS3) (C2PA)|
          Length = 966

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = +1

Query: 7   ESEPPTTNPLSK--ISCPNPHQKPNHATLNSSP*NQSPAP 120
           E+ P   +P S+   +CP P Q P  +T   SP  Q  +P
Sbjct: 504 EAAPGPESPSSEDIATCPKPPQSPETSTSKDSPPGQGSSP 543

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>GUAA_CLOTE (Q891G7) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)|
           (Glutamine amidotransferase) (GMP synthetase)
          Length = 510

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
 Frame = -3

Query: 208 ACLPFPVS-GLM-NERTHARGVGIRRINARDG 119
           ACLP   S G+M +ERT++  +G+R +N+ DG
Sbjct: 434 ACLPNIRSVGVMGDERTYSHTIGLRAVNSSDG 465

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>CIC_MOUSE (Q924A2) Protein capicua homolog|
          Length = 1606

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
 Frame = +2

Query: 14   SRPRQTRSR---KSPA--RTHTKNQITPL*TPPRKTNRLPPVACVNPPDPNPA 157
            S PRQ+      + PA   +  + Q TP   PP  T   PP A  +PP P PA
Sbjct: 1199 STPRQSSDSGVAREPAAPESELEGQPTPP-APPPPTETWPPTARSSPPPPLPA 1250

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>NACAM_MOUSE (P70670) Nascent polypeptide-associated complex alpha subunit,|
           muscle-specific form (Alpha-NAC, muscle-specific form)
          Length = 2187

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +3

Query: 111 ACPPSRALIRRIPTPRACVRSFISPDTGKGRQARSRE 221
           +CPP R ++  +P+    V S  +P   KG  A + E
Sbjct: 316 SCPPERCVVPALPSRLLAVDSGAAPSDDKGSSAVTNE 352

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>ARSL_CENAS (Q8GGJ6) Arsenite oxidase large subunit (EC 1.20.98.1)|
          Length = 826

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 12  GAAHDKPALENLLPEPTPKTKSRH 83
           G AH KPA  N LP+P  + K++H
Sbjct: 670 GKAHFKPAPWNGLPKPVEEQKAKH 693

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>GATB_BRAJA (Q89K31) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B|
           (EC 6.3.5.-) (Asp/Glu-ADT subunit B)
          Length = 492

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 307 SEPERLXPLPDQPRHLGWLITRVMGLKG 390
           + P++   + D+P+ LGW + +VM   G
Sbjct: 447 ANPDKAAQVKDKPQSLGWFVGQVMKASG 474

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>CCNE3_XENLA (O42575) G1/S-specific cyclin-E3|
          Length = 408

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +1

Query: 52  PNPHQKPNHATLNSSP*NQSPAPR 123
           PNP   P+ A+L  SP + SP PR
Sbjct: 83  PNPTSYPHFASLRFSPVSASPLPR 106

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>BLAC_NOCLA (Q06316) Beta-lactamase precursor (EC 3.5.2.6) (Penicillinase)|
          Length = 302

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 25/76 (32%), Positives = 30/76 (39%), Gaps = 4/76 (5%)
 Frame = +3

Query: 3   RRVGA-AHDKPALENLLPEPTPKTKSRHFKLLPVKPIACPPSRAL---IRRIPTPRACVR 170
           RRV A A  +PA     PEP P T S     +   P A PP  A+     R+ T      
Sbjct: 5   RRVHAWARARPAA----PEPAPPTPSAAAPSVAPGPAATPPDPAVEQEFTRLQTQYDARL 60

Query: 171 SFISPDTGKGRQARSR 218
              + DTG G     R
Sbjct: 61  GLYAVDTGSGESVAFR 76

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>Y1489_LEIXX (Q6AE99) UPF0109 protein Lxx14890|
          Length = 76

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 139 RINARDGGQAIGFTGRSLK-WRDLVFGVGSGRR 44
           R+N  D G+ IG +GR+ K  R LV  +  GRR
Sbjct: 36  RVNPEDLGRVIGRSGRTAKALRTLVTALADGRR 68

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>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
 Frame = +1

Query: 1   RGESEPPTTNPLSKISCPNPHQK------PNHATLNSSP*NQSPAPRR 126
           R  S PPT    S    P P ++      P   T +  P  +SP+PRR
Sbjct: 548 RSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRR 595

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>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like|
           neuronal protein 1) (Nervous system-specific RNA-binding
           protein Mel-N1)
          Length = 360

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = +1

Query: 4   GESEPPTTNPLSKISCPNPHQKPNHATLN---SSP*NQSPAP 120
           G+  P  T P++     NP QK N A L+    SP  + P P
Sbjct: 188 GQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGP 229

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>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
 Frame = +1

Query: 1   RGESEPPTTNPLSKISCPNPHQK------PNHATLNSSP*NQSPAPRR 126
           R  S PPT    S    P P ++      P   T +  P  +SP+PRR
Sbjct: 562 RSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRR 609

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>INO80_ASPFU (Q4WTV7) Putative DNA helicase ino80 (EC 3.6.1.-)|
          Length = 1708

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +2

Query: 89  TPPRKTNRLPPVACVNPPDPNPACVRAFVH*PRHGKRKAGEVKR 220
           TPP  T+ LPP + +   +P P    A    PR  K+ + E +R
Sbjct: 236 TPPPVTHALPPTSQLKVKEPEPISPAAL---PRLEKKPSAEKRR 276

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>STS_MOUSE (P50427) Steryl-sulfatase precursor (EC 3.1.6.2) (Steroid|
           sulfatase) (Steryl-sulfate sulfohydrolase)
           (Arylsulfatase C) (ASC)
          Length = 624

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
 Frame = +3

Query: 18  AHDKPALENLLPEP------TPKTKSRHFKLLPVKPIACPPSRALIRRIP 149
           AHD P L +L  +P      TP+ + RH ++L     A    RA +R  P
Sbjct: 503 AHDPPLLFDLTRDPGERRPLTPEAEPRHREVLDAIDAAARAHRARLRPAP 552

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>KCNKC_RAT (Q9ERS1) Potassium channel subfamily K member 12 (Tandem pore|
           domain halothane-inhibited potassium channel 2) (THIK-2)
          Length = 430

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
 Frame = +3

Query: 117 PPSRALIRRIPTPRACV----RSFISPDTGK 197
           PP R   RR+P P  C     RS ++ DTG+
Sbjct: 8   PPPRRCRRRLPRPSCCCCCCRRSHLNEDTGR 38

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>AMYG_RHIOR (P07683) Glucoamylase 1 precursor (EC 3.2.1.3) (Gluc 1) (Glucan|
           1,4-alpha-glucosidase) (1,4-alpha-D-glucan
           glucohydrolase) [Contains: Glucoamylase 2 (Gluc 2);
           Glucoamylase 3 (Gluc 3)]
          Length = 604

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 17/59 (28%), Positives = 23/59 (38%)
 Frame = +3

Query: 54  EPTPKTKSRHFKLLPVKPIACPPSRALIRRIPTPRACVRSFISPDTGKGRQARSRERRP 230
           +PT  T +      P      PPSR+     PT  + + S+I    G  R A  R   P
Sbjct: 133 KPTTTTATATTTTAPSTSTTTPPSRSEPATFPTGNSTISSWIKKQEGISRFAMLRNINP 191

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>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)|
          Length = 359

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = +1

Query: 4   GESEPPTTNPLSKISCPNPHQKPNHATLN---SSP*NQSPAP 120
           G+  P  T P++     NP QK N A L+    SP  + P P
Sbjct: 188 GQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGP 229

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>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2|
          Length = 359

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = +1

Query: 4   GESEPPTTNPLSKISCPNPHQKPNHATLN---SSP*NQSPAP 120
           G+  P  T P++     NP QK N A L+    SP  + P P
Sbjct: 188 GQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGP 229

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>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like|
           neuronal protein 1) (Nervous system-specific RNA-binding
           protein Hel-N1)
          Length = 359

 Score = 27.3 bits (59), Expect = 9.0
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = +1

Query: 4   GESEPPTTNPLSKISCPNPHQKPNHATLN---SSP*NQSPAP 120
           G+  P  T P++     NP QK N A L+    SP  + P P
Sbjct: 188 GQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGP 229


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,630,849
Number of Sequences: 219361
Number of extensions: 983210
Number of successful extensions: 3674
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 3409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3657
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 1370455656
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result