ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl11g12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, ... 468 e-129
2ref|XM_469655.1| Oryza sativa (japonica cultivar-group), mRNA 194 1e-46
3dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clon... 194 1e-46
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 188 7e-45
5gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genom... 188 7e-45
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 188 7e-45
7emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2 178 6e-42
8gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds 155 9e-35
9ref|XM_469409.1| Oryza sativa (japonica cultivar-group), mRNA 139 6e-30
10gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosom... 135 9e-29
11gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genom... 135 9e-29
12gb|AF329371.1|AF329371 Zea mays lipoxygenase mRNA, complete cds 123 3e-25
13gb|AF457968.1| Zea mays clone cho1c.pk002.j23, mRNA sequence 123 3e-25
14gb|AF464895.1| Oryza sativa basmati-370 lipoxygenase (Lox) gene,... 117 2e-23
15gb|AF465643.1| Zea mays B73 lipoxygenase gene, complete cds 117 2e-23
16gb|U83904.1|HVU83904 Hordeum vulgare lipoxygenase isoenzyme 1 (L... 115 8e-23
17gb|AF271894.1|AF271894 Zea mays lipoxygenase (LOX) mRNA, complet... 92 1e-15
18gb|AF465642.1| Zea mays Golden cross bantam-70 lipoxygenase gene... 80 4e-12
19gb|AE005807.1| Caulobacter crescentus CB15 section 133 of 359 of... 44 0.25
20ref|NM_003028.1| Homo sapiens Src homology 2 domain containing a... 42 0.97
21gb|AY596511.1| Helicosporidium sp. ex Simulium jonesii gamma-car... 42 0.97
22emb|X75342.1|HSSHB H.sapiens SHB mRNA 42 0.97
23gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.8
24gb|AY316746.1| Rhizobium sp. NGR234 megaplasmid 2 contig 2, comp... 40 3.8
25emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete ch... 40 3.8
26gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, compl... 40 3.8
27gb|AC124918.5| Rattus norvegicus 4 BAC CH230-4H1 (Children's Hos... 40 3.8
28ref|XM_967239.1| PREDICTED: Tribolium castaneum similar to CG119... 40 3.8
29emb|AL731878.4|CNS08C8I Oryza sativa chromosome 3, . BAC OSJNBb0... 40 3.8
30gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome 40 3.8
31dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 3.8
32dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 3.8
33dbj|AK109329.2| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.8
34gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 40 3.8
35gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 3.8 
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds
          Length = 2910

 Score =  468 bits (236), Expect = e-129
 Identities = 282/292 (96%), Gaps = 4/292 (1%)
 Strand = Plus / Plus

                                                                       
Query: 2   cacacagcagcaccacagcgagctaacttagcaagcgtgccacactccccagagatcgag 61
           ||||||||| |||| |||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 3   cacacagca-caccgcagcgagctaacttag-aagcgtgccacactccc-agagatcgag 59

                                                                       
Query: 62  cgaagatgtttggcgtcggcggcatcgtgagcgacctgacggggggcctccggggcgccc 121
           | |||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 60  c-aagatgcttggcgtcggcggcatcgtgagcgacttgacggggggcatccggggcgccc 118

                                                                       
Query: 122 acctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcg 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 119 acctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcg 178

                                                                       
Query: 182 ccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatca 241
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 179 cccacgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatca 238

                                                               
Query: 242 gctccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcgga 293
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 gctccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcgga 290
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>ref|XM_469655.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2613

 Score =  194 bits (98), Expect = 1e-46
 Identities = 137/150 (91%)
 Strand = Plus / Plus

                                                                       
Query: 117 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 176
           ||||| ||||||||||||| |||||||||||||||||||||| |||||| ||||||||||
Sbjct: 42  cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 101

                                                                       
Query: 177 cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagct 236
           ||||||||||||||| |||||| || ||||| ||||||||||||||||||||||||||||
Sbjct: 102 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcgtcacctgccagct 161

                                         
Query: 237 catcagctccaccaacgtcgaccacaacaa 266
           | |||||||| ||  |||||||| ||||||
Sbjct: 162 cgtcagctcctccctcgtcgaccccaacaa 191
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>dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E17, full
           insert sequence
          Length = 2928

 Score =  194 bits (98), Expect = 1e-46
 Identities = 137/150 (91%)
 Strand = Plus / Plus

                                                                       
Query: 117 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 176
           ||||| ||||||||||||| |||||||||||||||||||||| |||||| ||||||||||
Sbjct: 157 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 216

                                                                       
Query: 177 cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagct 236
           ||||||||||||||| |||||| || ||||| ||||||||||||||||||||||||||||
Sbjct: 217 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcgtcacctgccagct 276

                                         
Query: 237 catcagctccaccaacgtcgaccacaacaa 266
           | |||||||| ||  |||||||| ||||||
Sbjct: 277 cgtcagctcctccctcgtcgaccccaacaa 306
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  188 bits (95), Expect = 7e-45
 Identities = 131/143 (91%)
 Strand = Plus / Plus

                                                                            
Query: 117      cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 176
                ||||| ||||||||||||| |||||||||||||||||||||| |||||| ||||||||||
Sbjct: 30023301 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 30023360

                                                                            
Query: 177      cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagct 236
                ||||||||||||||| |||||| || ||||| ||||||||||||||||||||||||||||
Sbjct: 30023361 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcgtcacctgccagct 30023420

                                       
Query: 237      catcagctccaccaacgtcgacc 259
                | |||||||| ||  ||||||||
Sbjct: 30023421 cgtcagctcctccctcgtcgacc 30023443



 Score =  135 bits (68), Expect = 9e-29
 Identities = 119/136 (87%)
 Strand = Plus / Plus

                                                                            
Query: 124      ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 183
                ||||||||| | || || ||||||||||||||||  |||||| |||||||||||||||||
Sbjct: 27798757 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 27798816

                                                                            
Query: 184      accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 243
                |||||||| |||||| ||  |||| ||||||||   ||||||||||||||||||||||||
Sbjct: 27798817 accgtcatcgacggcctcggcgagttcctcggcaagggcgtcacctgccagctcatcagc 27798876

                                
Query: 244      tccaccaacgtcgacc 259
                ||||||  ||||||||
Sbjct: 27798877 tccaccgccgtcgacc 27798892



 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 73       ggcgtcggcggcatcgtgag 92
                ||||||||||||||||||||
Sbjct: 24817033 ggcgtcggcggcatcgtgag 24817052
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>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete
             sequence
          Length = 155106

 Score =  188 bits (95), Expect = 7e-45
 Identities = 131/143 (91%)
 Strand = Plus / Minus

                                                                         
Query: 117   cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 176
             ||||| ||||||||||||| |||||||||||||||||||||| |||||| ||||||||||
Sbjct: 84450 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 84391

                                                                         
Query: 177   cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagct 236
             ||||||||||||||| |||||| || ||||| ||||||||||||||||||||||||||||
Sbjct: 84390 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcgtcacctgccagct 84331

                                    
Query: 237   catcagctccaccaacgtcgacc 259
             | |||||||| ||  ||||||||
Sbjct: 84330 cgtcagctcctccctcgtcgacc 84308
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  188 bits (95), Expect = 7e-45
 Identities = 131/143 (91%)
 Strand = Plus / Plus

                                                                            
Query: 117      cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 176
                ||||| ||||||||||||| |||||||||||||||||||||| |||||| ||||||||||
Sbjct: 30114723 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 30114782

                                                                            
Query: 177      cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagct 236
                ||||||||||||||| |||||| || ||||| ||||||||||||||||||||||||||||
Sbjct: 30114783 cggcgccaccgtcatcgacggcatctccgagttcctcggccgcggcgtcacctgccagct 30114842

                                       
Query: 237      catcagctccaccaacgtcgacc 259
                | |||||||| ||  ||||||||
Sbjct: 30114843 cgtcagctcctccctcgtcgacc 30114865



 Score =  135 bits (68), Expect = 9e-29
 Identities = 119/136 (87%)
 Strand = Plus / Plus

                                                                            
Query: 124      ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 183
                ||||||||| | || || ||||||||||||||||  |||||| |||||||||||||||||
Sbjct: 27890081 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 27890140

                                                                            
Query: 184      accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 243
                |||||||| |||||| ||  |||| ||||||||   ||||||||||||||||||||||||
Sbjct: 27890141 accgtcatcgacggcctcggcgagttcctcggcaagggcgtcacctgccagctcatcagc 27890200

                                
Query: 244      tccaccaacgtcgacc 259
                ||||||  ||||||||
Sbjct: 27890201 tccaccgccgtcgacc 27890216



 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 73       ggcgtcggcggcatcgtgag 92
                ||||||||||||||||||||
Sbjct: 24908356 ggcgtcggcggcatcgtgag 24908375
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>emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2
          Length = 2830

 Score =  178 bits (90), Expect = 6e-42
 Identities = 135/150 (90%)
 Strand = Plus / Plus

                                                                       
Query: 117 cgcccacctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgactt 176
           ||||| ||||||||||||| |||||||||||||||||||||| |||||| ||||||||||
Sbjct: 139 cgcccgcctcaagggctccctcgtcctcatgcgcaagaacgccctcgacatcaacgactt 198

                                                                       
Query: 177 cggcgccaccgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagct 236
           ||||||||||||||| ||  || || ||||| ||||||||||||||||||||||||||||
Sbjct: 199 cggcgccaccgtcatcgagcgcatctccgagttcctcggccgcggcgtcacctgccagct 258

                                         
Query: 237 catcagctccaccaacgtcgaccacaacaa 266
           | |||||||| ||  |||||||| ||||||
Sbjct: 259 cgtcagctcctccctcgtcgaccccaacaa 288
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>gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds
          Length = 2818

 Score =  155 bits (78), Expect = 9e-35
 Identities = 147/170 (86%)
 Strand = Plus / Plus

                                                                       
Query: 124 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 183
           ||||||||| | || || |||||||||||||||| ||| ||| |||||||||||||||||
Sbjct: 123 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 182

                                                                       
Query: 184 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 243
           ||| |||| |||||| ||  |||| ||||||||   ||||||||||||||||| ||||||
Sbjct: 183 accatcatcgacggcatcggcgagttcctcggcaagggcgtcacctgccagcttatcagc 242

                                                             
Query: 244 tccaccaacgtcgaccacaacaacggtgggcgcgggaaggtgggcgcgga 293
           ||||||  |||||||||  ||||||| || ||||||||||||||||||||
Sbjct: 243 tccaccgccgtcgaccaagacaacggcggtcgcgggaaggtgggcgcgga 292
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>ref|XM_469409.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2601

 Score =  139 bits (70), Expect = 6e-30
 Identities = 127/146 (86%)
 Strand = Plus / Plus

                                                                       
Query: 124 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 183
           ||||||||| | || || ||||||||||||||||  |||||| |||||||||||||||||
Sbjct: 52  ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 111

                                                                       
Query: 184 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 243
           |||||||| |||||| ||  |||| ||||||||   ||||||||||||||||||||||||
Sbjct: 112 accgtcatcgacggcctcggcgagttcctcggcaagggcgtcacctgccagctcatcagc 171

                                     
Query: 244 tccaccaacgtcgaccacaacaacgg 269
           ||||||  ||||||||  ||||||||
Sbjct: 172 tccaccgccgtcgacccaaacaacgg 197
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>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16
             map S2606, complete sequence
          Length = 124140

 Score =  135 bits (68), Expect = 9e-29
 Identities = 119/136 (87%)
 Strand = Plus / Plus

                                                                         
Query: 124   ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 183
             ||||||||| | || || ||||||||||||||||  |||||| |||||||||||||||||
Sbjct: 42887 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 42946

                                                                         
Query: 184   accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 243
             |||||||| |||||| ||  |||| ||||||||   ||||||||||||||||||||||||
Sbjct: 42947 accgtcatcgacggcctcggcgagttcctcggcaagggcgtcacctgccagctcatcagc 43006

                             
Query: 244   tccaccaacgtcgacc 259
             ||||||  ||||||||
Sbjct: 43007 tccaccgccgtcgacc 43022
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>gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete
             sequence
          Length = 119329

 Score =  135 bits (68), Expect = 9e-29
 Identities = 119/136 (87%)
 Strand = Plus / Minus

                                                                         
Query: 124   ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 183
             ||||||||| | || || ||||||||||||||||  |||||| |||||||||||||||||
Sbjct: 15136 ctcaagggcacggtggtgctcatgcgcaagaacgtcctcgacctcaacgacttcggcgcc 15077

                                                                         
Query: 184   accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 243
             |||||||| |||||| ||  |||| ||||||||   ||||||||||||||||||||||||
Sbjct: 15076 accgtcatcgacggcctcggcgagttcctcggcaagggcgtcacctgccagctcatcagc 15017

                             
Query: 244   tccaccaacgtcgacc 259
             ||||||  ||||||||
Sbjct: 15016 tccaccgccgtcgacc 15001
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>gb|AF329371.1|AF329371 Zea mays lipoxygenase mRNA, complete cds
          Length = 2595

 Score =  123 bits (62), Expect = 3e-25
 Identities = 125/146 (85%)
 Strand = Plus / Plus

                                                                       
Query: 124 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 183
           ||||||||| | || || |||||||||||||||| ||| ||| |||||||||||||||||
Sbjct: 52  ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 111

                                                                       
Query: 184 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 243
           |||||| | ||| || ||| |||| ||||||||   || |||||||||||||||||||||
Sbjct: 112 accgtcgttgacagcatcagcgagttcctcggcaagggggtcacctgccagctcatcagc 171

                                     
Query: 244 tccaccaacgtcgaccacaacaacgg 269
           ||||||  |||||||  |||||||||
Sbjct: 172 tccaccctcgtcgacgccaacaacgg 197
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>gb|AF457968.1| Zea mays clone cho1c.pk002.j23, mRNA sequence
          Length = 515

 Score =  123 bits (62), Expect = 3e-25
 Identities = 125/146 (85%)
 Strand = Plus / Plus

                                                                       
Query: 124 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 183
           ||||||||| | || || |||||||||||||||| ||| ||| |||||||||||||||||
Sbjct: 114 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 173

                                                                       
Query: 184 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 243
           |||||| | ||| || ||| |||| ||||||||   || |||||||||||||||||||||
Sbjct: 174 accgtcgttgacagcatcagcgagttcctcggcaagggggtcacctgccagctcatcagc 233

                                     
Query: 244 tccaccaacgtcgaccacaacaacgg 269
           ||||||  |||||||  |||||||||
Sbjct: 234 tccaccctcgtcgacgccaacaacgg 259
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>gb|AF464895.1| Oryza sativa basmati-370 lipoxygenase (Lox) gene, partial cds
          Length = 1160

 Score =  117 bits (59), Expect = 2e-23
 Identities = 89/99 (89%)
 Strand = Plus / Plus

                                                                       
Query: 148 cgcaagaacgcgctcgacttcaacgacttcggcgccaccgtcatggacggcgtcaccgag 207
           ||||||||||| |||||| ||||||||||||||||||||||| | |   ||||| |||||
Sbjct: 1   cgcaagaacgccctcgacatcaacgacttcggcgccaccgtcctcgggcgcgtctccgag 60

                                                  
Query: 208 ctcctcggccgcggcgtcacctgccagctcatcagctcc 246
            ||||||||||||||||||||||||||||| ||||||||
Sbjct: 61  ttcctcggccgcggcgtcacctgccagctcgtcagctcc 99
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>gb|AF465643.1| Zea mays B73 lipoxygenase gene, complete cds
          Length = 5013

 Score =  117 bits (59), Expect = 2e-23
 Identities = 116/135 (85%)
 Strand = Plus / Plus

                                                                       
Query: 124 ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 183
           ||||||||| | || || |||||||||||||||| ||| ||| |||||||||||||||||
Sbjct: 200 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 259

                                                                       
Query: 184 accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 243
           |||||| | ||| || ||| |||| ||||||||   || |||||||||||||||||||||
Sbjct: 260 accgtcgttgacagcatcagcgagttcctcggcaagggggtcacctgccagctcatcagc 319

                          
Query: 244 tccaccaacgtcgac 258
           ||||||  |||||||
Sbjct: 320 tccaccctcgtcgac 334
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>gb|U83904.1|HVU83904 Hordeum vulgare lipoxygenase isoenzyme 1 (Lox:Hv1) gene, promoter
            region and partial cds
          Length = 5236

 Score =  115 bits (58), Expect = 8e-23
 Identities = 109/126 (86%)
 Strand = Plus / Plus

                                                                        
Query: 124  ctcaagggctccgtcgtcctcatgcgcaagaacgcgctcgacttcaacgacttcggcgcc 183
            ||||||||| | || || |||||||||||||||| ||| ||| |||||||||||||||||
Sbjct: 3566 ctcaagggcacggtggtgctcatgcgcaagaacgtgctggacctcaacgacttcggcgcc 3625

                                                                        
Query: 184  accgtcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagc 243
            ||| |||| |||||| ||  |||| ||||||||   ||||||||||||||||| ||||||
Sbjct: 3626 accatcatcgacggcatcggcgagttcctcggcaagggcgtcacctgccagcttatcagc 3685

                  
Query: 244  tccacc 249
            ||||||
Sbjct: 3686 tccacc 3691



 Score = 46.1 bits (23), Expect = 0.062
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                           
Query: 263  acaacggtgggcgcgggaaggtgggcgcgga 293
            ||||||| || ||||||||||||||||||||
Sbjct: 4255 acaacggcggtcgcgggaaggtgggcgcgga 4285
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>gb|AF271894.1|AF271894 Zea mays lipoxygenase (LOX) mRNA, complete cds
          Length = 2845

 Score = 91.7 bits (46), Expect = 1e-15
 Identities = 79/90 (87%)
 Strand = Plus / Plus

                                                                       
Query: 204 cgagctcctcggccgcggcgtcacctgccagctcatcagctccaccaacgtcgaccacaa 263
           |||| |||||||||||||||||||||||||||| ||||||||||||  ||||||||  ||
Sbjct: 153 cgagttcctcggccgcggcgtcacctgccagcttatcagctccaccgtcgtcgaccctaa 212

                                         
Query: 264 caacggtgggcgcgggaaggtgggcgcgga 293
           ||||||    ||||||||| ||||||||||
Sbjct: 213 caacggcaaccgcgggaagttgggcgcgga 242
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>gb|AF465642.1| Zea mays Golden cross bantam-70 lipoxygenase gene, promoter region
            and partial cds
          Length = 3196

 Score = 79.8 bits (40), Expect = 4e-12
 Identities = 64/72 (88%)
 Strand = Plus / Plus

                                                                        
Query: 188  tcatggacggcgtcaccgagctcctcggccgcggcgtcacctgccagctcatcagctcca 247
            ||||||||||| ||  |||| ||||||||||||||||||||||||| ||| |||||||||
Sbjct: 2387 tcatggacggcctcggcgagttcctcggccgcggcgtcacctgccaactcgtcagctcca 2446

                        
Query: 248  ccaacgtcgacc 259
            ||  ||||||||
Sbjct: 2447 ccgtcgtcgacc 2458
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>gb|AE005807.1| Caulobacter crescentus CB15 section 133 of 359 of the complete genome
          Length = 8803

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 156  cgcgctcgacttcaacgacttcggcg 181
            ||||| ||||||||||||||||||||
Sbjct: 4469 cgcgcacgacttcaacgacttcggcg 4494
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>ref|NM_003028.1| Homo sapiens Src homology 2 domain containing adaptor protein B
           (SHB), mRNA
          Length = 2306

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 101 cggggggcctccggggcgccc 121
           |||||||||||||||||||||
Sbjct: 469 cggggggcctccggggcgccc 449
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>gb|AY596511.1| Helicosporidium sp. ex Simulium jonesii gamma-carbonic anhydrase
           mRNA, partial cds
          Length = 775

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 177 cggcgccaccgtcatggacggcgtcaccg 205
           ||||||||| ||||||||||||| |||||
Sbjct: 400 cggcgccacggtcatggacggcgccaccg 428
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>emb|X75342.1|HSSHB H.sapiens SHB mRNA
          Length = 2306

 Score = 42.1 bits (21), Expect = 0.97
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 101 cggggggcctccggggcgccc 121
           |||||||||||||||||||||
Sbjct: 469 cggggggcctccggggcgccc 449
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>gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0088L13
             map near C50029S, complete sequence
          Length = 129900

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    ggcgtcggcggcatcgtgag 92
             ||||||||||||||||||||
Sbjct: 52268 ggcgtcggcggcatcgtgag 52287
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>gb|AY316746.1| Rhizobium sp. NGR234 megaplasmid 2 contig 2, complete sequence
          Length = 236455

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 78     cggcggcatcgtgagcgacctgac 101
              ||||||||||| ||||||||||||
Sbjct: 205636 cggcggcatcgagagcgacctgac 205659
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>emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete chromosome; segment 9/12
          Length = 323450

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 78    cggcggcatcgtgagcgacctgac 101
             ||||||||||| ||||||||||||
Sbjct: 80122 cggcggcatcgagagcgacctgac 80099
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>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 206     agctcctcggccgcggcgtc 225
               ||||||||||||||||||||
Sbjct: 1962239 agctcctcggccgcggcgtc 1962220
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>gb|AC124918.5| Rattus norvegicus 4 BAC CH230-4H1 (Children's Hospital Oakland Research
             Institute) complete sequence
          Length = 228052

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 233   agctcatcagctccaccaac 252
             ||||||||||||||||||||
Sbjct: 82121 agctcatcagctccaccaac 82102
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>ref|XM_967239.1| PREDICTED: Tribolium castaneum similar to CG11980-PC, isoform C
           (LOC661050), mRNA
          Length = 1156

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 246 caccaacgtcgaccacaaca 265
           ||||||||||||||||||||
Sbjct: 239 caccaacgtcgaccacaaca 220
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>emb|AL731878.4|CNS08C8I Oryza sativa chromosome 3, . BAC OSJNBb0116P11 of library OSJNBb from
              chromosome 3 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 128559

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 73     ggcgtcggcggcatcgtgag 92
              ||||||||||||||||||||
Sbjct: 103984 ggcgtcggcggcatcgtgag 104003
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>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome
          Length = 3304561

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 176     tcggcgccaccgtcatggacggcg 199
               ||||||||| ||||||||||||||
Sbjct: 2990742 tcggcgccatcgtcatggacggcg 2990719
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 73      ggcgtcggcggcatcgtgagcgac 96
               |||||||||||||||||| |||||
Sbjct: 5079435 ggcgtcggcggcatcgtgcgcgac 5079412
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 73     ggcgtcggcggcatcgtgagcgac 96
              |||||||||||||||||| |||||
Sbjct: 590306 ggcgtcggcggcatcgtgcgcgac 590329



 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 146    tgcgcaagaacgcgctcgacttca 169
              ||||||||||| ||||||||||||
Sbjct: 206796 tgcgcaagaacccgctcgacttca 206773
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>dbj|AK109329.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-B01, full
           insert sequence
          Length = 1556

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 73  ggcgtcggcggcatcgtgag 92
           ||||||||||||||||||||
Sbjct: 613 ggcgtcggcggcatcgtgag 594
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 192     ggacggcgtcaccgagctcctcggccgcggcg 223
               ||||||||| | |||| |||||||||||||||
Sbjct: 1448865 ggacggcgtgatcgagttcctcggccgcggcg 1448834
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>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 3.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 73     ggcgtcggcggcatcgtgagcgac 96
              |||||||||||||||||| |||||
Sbjct: 657733 ggcgtcggcggcatcgtgcgcgac 657756


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,622,714
Number of Sequences: 3902068
Number of extensions: 1622714
Number of successful extensions: 33633
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33000
Number of HSP's gapped (non-prelim): 629
length of query: 293
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 271
effective length of database: 17,147,199,772
effective search space: 4646891138212
effective search space used: 4646891138212
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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