ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl11g10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_550395.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.46
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.46
3dbj|AP003118.2| Oryza sativa (japonica cultivar-group) genomic D... 42 0.46
4dbj|AK120377.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.46
5gb|AC124250.11| Mus musculus chromosome 12, clone RP24-286P13, c... 40 1.8
6gb|AC102105.8| Mus musculus chromosome 12, clone RP23-89G24, com... 40 1.8
7emb|AL627101.25| Mouse DNA sequence from clone RP23-140F18 on ch... 40 1.8
8gb|AC158938.13| Mus musculus chromosome 3, clone RP23-304F19, co... 40 1.8
9gb|AC137610.2| Oryza sativa (japonica cultivar-group) chromosome... 38 7.1
10ref|XM_324132.1| Neurospora crassa OR74A predicted protein (NCU0... 38 7.1
11ref|XM_955132.1| Neurospora crassa OR74A hypothetical protein (N... 38 7.1
12gb|AC021016.5| Homo sapiens BAC clone RP11-378A13 from 2, comple... 38 7.1
13gb|AC130731.2| Oryza sativa (japonica cultivar-group) chromosome... 38 7.1
14emb|AL356862.10| Human DNA sequence from clone RP11-1M19 on chro... 38 7.1
15emb|BX897677.1| Neurospora crassa DNA linkage group VI BAC clone... 38 7.1
16emb|AL591430.8| Mouse DNA sequence from clone RP23-41B20 on chro... 38 7.1
17gb|AC023736.4| Drosophila melanogaster X BAC RP98-4P5 (Roswell P... 38 7.1
18dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 38 7.1
19gb|AC018448.16|AC018448 Homo sapiens 12 BAC RP11-554L12 (Roswell... 38 7.1
20gb|AC023696.4| Drosophila melanogaster X BAC RP98-17J10 (Roswell... 38 7.1
21emb|AL669967.12| Mouse DNA sequence from clone RP23-216M21 on ch... 38 7.1
22ref|XM_557901.1| Anopheles gambiae str. PEST ENSANGP00000026244 ... 38 7.1
23gb|AE003444.3| Drosophila melanogaster chromosome X, section 28 ... 38 7.1

>ref|XM_550395.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2715

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 120 gatggggtacctcctcctctcgccctcgc 148
           ||||||||||||||||||| |||| ||||
Sbjct: 158 gatggggtacctcctcctcgcgccgtcgc 186



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                            
Query: 120     gatggggtacctcctcctctcgccctcgc 148
               ||||||||||||||||||| |||| ||||
Sbjct: 4212146 gatggggtacctcctcctcgcgccgtcgc 4212118



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>dbj|AP003118.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1174_D05
          Length = 128525

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 120   gatggggtacctcctcctctcgccctcgc 148
             ||||||||||||||||||| |||| ||||
Sbjct: 50113 gatggggtacctcctcctcgcgccgtcgc 50085



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>dbj|AK120377.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071N06, full
           insert sequence
          Length = 2715

 Score = 42.1 bits (21), Expect = 0.46
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 120 gatggggtacctcctcctctcgccctcgc 148
           ||||||||||||||||||| |||| ||||
Sbjct: 158 gatggggtacctcctcctcgcgccgtcgc 186



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>gb|AC124250.11| Mus musculus chromosome 12, clone RP24-286P13, complete sequence
          Length = 213630

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 89     gcctctgcccttgcctctgc 108
              ||||||||||||||||||||
Sbjct: 208531 gcctctgcccttgcctctgc 208512



 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 89     gcctctgcccttgcctctgc 108
              ||||||||||||||||||||
Sbjct: 208213 gcctctgcccttgcctctgc 208194



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>gb|AC102105.8| Mus musculus chromosome 12, clone RP23-89G24, complete sequence
          Length = 188853

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 89    gcctctgcccttgcctctgc 108
             ||||||||||||||||||||
Sbjct: 15278 gcctctgcccttgcctctgc 15259



 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 89    gcctctgcccttgcctctgc 108
             ||||||||||||||||||||
Sbjct: 14960 gcctctgcccttgcctctgc 14941



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>emb|AL627101.25| Mouse DNA sequence from clone RP23-140F18 on chromosome 4, complete
             sequence
          Length = 132504

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 89    gcctctgcccttgcctctgc 108
             ||||||||||||||||||||
Sbjct: 16214 gcctctgcccttgcctctgc 16233



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>gb|AC158938.13| Mus musculus chromosome 3, clone RP23-304F19, complete sequence
          Length = 232469

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      ggacccactctctctccttc 20
              ||||||||||||||||||||
Sbjct: 158474 ggacccactctctctccttc 158493



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>gb|AC137610.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
              OSJNBa0018H09, complete sequence
          Length = 155329

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 3      acccactctctctccttcg 21
              |||||||||||||||||||
Sbjct: 142462 acccactctctctccttcg 142444



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>ref|XM_324132.1| Neurospora crassa OR74A predicted protein (NCU04776.1) partial mRNA
          Length = 1257

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 8    ctctctctccttcgcctcc 26
            |||||||||||||||||||
Sbjct: 1206 ctctctctccttcgcctcc 1188



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>ref|XM_955132.1| Neurospora crassa OR74A hypothetical protein (NCU04776.1) partial
            mRNA
          Length = 1257

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 8    ctctctctccttcgcctcc 26
            |||||||||||||||||||
Sbjct: 1206 ctctctctccttcgcctcc 1188



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>gb|AC021016.5| Homo sapiens BAC clone RP11-378A13 from 2, complete sequence
          Length = 191755

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 89     gcctctgcccttgcctctg 107
              |||||||||||||||||||
Sbjct: 165578 gcctctgcccttgcctctg 165560



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>gb|AC130731.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0692E03,
             complete sequence
          Length = 74462

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 3     acccactctctctccttcg 21
             |||||||||||||||||||
Sbjct: 13455 acccactctctctccttcg 13437



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>emb|AL356862.10| Human DNA sequence from clone RP11-1M19 on chromosome 9q34.11-34.3
             Contains part of the RALGPS1A gene for Ral guanine
             nucleotide exchange factor RalGPS1A (RALGEF2, KIAA0351)
             and the ANGPTL2 gene for angiopoietin-like 2
             (angiopoietin-related protein 2)(ARP2, HARP), complete
             sequence
          Length = 145481

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 90    cctctgcccttgcctctgc 108
             |||||||||||||||||||
Sbjct: 75593 cctctgcccttgcctctgc 75611



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>emb|BX897677.1| Neurospora crassa DNA linkage group VI BAC clone B15B10
          Length = 77986

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 8     ctctctctccttcgcctcc 26
             |||||||||||||||||||
Sbjct: 42077 ctctctctccttcgcctcc 42095



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>emb|AL591430.8| Mouse DNA sequence from clone RP23-41B20 on chromosome 2 Contains the
            5' end of the Cdh22 gene for cadherin 22, the Ovcov1 gene
            for ovarian cancer overexpressed 1, the Elmo2 gene for
            engulfment and cell motility 2, ced-12 homolog (C.
            elegans), the 3' end of a putative novel zinc finger
            protein and three CpG islands, complete sequence
          Length = 144243

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 92   tctgcccttgcctctgcgg 110
            |||||||||||||||||||
Sbjct: 8708 tctgcccttgcctctgcgg 8726



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>gb|AC023736.4| Drosophila melanogaster X BAC RP98-4P5 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 165052

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 8      ctctctctccttcgcctcc 26
              |||||||||||||||||||
Sbjct: 164607 ctctctctccttcgcctcc 164625



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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                   
Query: 3        acccactctctctccttcg 21
                |||||||||||||||||||
Sbjct: 11240208 acccactctctctccttcg 11240190



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>gb|AC018448.16|AC018448 Homo sapiens 12 BAC RP11-554L12 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 167563

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 90     cctctgcccttgcctctgc 108
              |||||||||||||||||||
Sbjct: 149133 cctctgcccttgcctctgc 149151



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>gb|AC023696.4| Drosophila melanogaster X BAC RP98-17J10 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 174367

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 8     ctctctctccttcgcctcc 26
             |||||||||||||||||||
Sbjct: 27942 ctctctctccttcgcctcc 27960



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>emb|AL669967.12| Mouse DNA sequence from clone RP23-216M21 on chromosome X, complete
             sequence
          Length = 219583

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 86    tcggcctctgcccttgcctctgc 108
             |||||||||||| ||||||||||
Sbjct: 95648 tcggcctctgcctttgcctctgc 95670



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>ref|XM_557901.1| Anopheles gambiae str. PEST ENSANGP00000026244 (ENSANGG00000023195),
            partial mRNA
          Length = 2121

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 107  gcgggtgtggcgcgatggg 125
            |||||||||||||||||||
Sbjct: 1674 gcgggtgtggcgcgatggg 1692



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>gb|AE003444.3| Drosophila melanogaster chromosome X, section 28 of 74 of the complete
             sequence
          Length = 299633

 Score = 38.2 bits (19), Expect = 7.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 8     ctctctctccttcgcctcc 26
             |||||||||||||||||||
Sbjct: 22396 ctctctctccttcgcctcc 22414


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,140,036
Number of Sequences: 3902068
Number of extensions: 1140036
Number of successful extensions: 86511
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 86361
Number of HSP's gapped (non-prelim): 150
length of query: 148
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 127
effective length of database: 17,151,101,840
effective search space: 2178189933680
effective search space used: 2178189933680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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