Clone Name | bastl11g10 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_550395.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2715 Score = 42.1 bits (21), Expect = 0.46 Identities = 27/29 (93%) Strand = Plus / Plus Query: 120 gatggggtacctcctcctctcgccctcgc 148 ||||||||||||||||||| |||| |||| Sbjct: 158 gatggggtacctcctcctcgcgccgtcgc 186
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 0.46 Identities = 27/29 (93%) Strand = Plus / Minus Query: 120 gatggggtacctcctcctctcgccctcgc 148 ||||||||||||||||||| |||| |||| Sbjct: 4212146 gatggggtacctcctcctcgcgccgtcgc 4212118
>dbj|AP003118.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1174_D05 Length = 128525 Score = 42.1 bits (21), Expect = 0.46 Identities = 27/29 (93%) Strand = Plus / Minus Query: 120 gatggggtacctcctcctctcgccctcgc 148 ||||||||||||||||||| |||| |||| Sbjct: 50113 gatggggtacctcctcctcgcgccgtcgc 50085
>dbj|AK120377.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013071N06, full insert sequence Length = 2715 Score = 42.1 bits (21), Expect = 0.46 Identities = 27/29 (93%) Strand = Plus / Plus Query: 120 gatggggtacctcctcctctcgccctcgc 148 ||||||||||||||||||| |||| |||| Sbjct: 158 gatggggtacctcctcctcgcgccgtcgc 186
>gb|AC124250.11| Mus musculus chromosome 12, clone RP24-286P13, complete sequence Length = 213630 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 gcctctgcccttgcctctgc 108 |||||||||||||||||||| Sbjct: 208531 gcctctgcccttgcctctgc 208512 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 gcctctgcccttgcctctgc 108 |||||||||||||||||||| Sbjct: 208213 gcctctgcccttgcctctgc 208194
>gb|AC102105.8| Mus musculus chromosome 12, clone RP23-89G24, complete sequence Length = 188853 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 gcctctgcccttgcctctgc 108 |||||||||||||||||||| Sbjct: 15278 gcctctgcccttgcctctgc 15259 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 gcctctgcccttgcctctgc 108 |||||||||||||||||||| Sbjct: 14960 gcctctgcccttgcctctgc 14941
>emb|AL627101.25| Mouse DNA sequence from clone RP23-140F18 on chromosome 4, complete sequence Length = 132504 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 89 gcctctgcccttgcctctgc 108 |||||||||||||||||||| Sbjct: 16214 gcctctgcccttgcctctgc 16233
>gb|AC158938.13| Mus musculus chromosome 3, clone RP23-304F19, complete sequence Length = 232469 Score = 40.1 bits (20), Expect = 1.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 ggacccactctctctccttc 20 |||||||||||||||||||| Sbjct: 158474 ggacccactctctctccttc 158493
>gb|AC137610.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone OSJNBa0018H09, complete sequence Length = 155329 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 acccactctctctccttcg 21 ||||||||||||||||||| Sbjct: 142462 acccactctctctccttcg 142444
>ref|XM_324132.1| Neurospora crassa OR74A predicted protein (NCU04776.1) partial mRNA Length = 1257 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 8 ctctctctccttcgcctcc 26 ||||||||||||||||||| Sbjct: 1206 ctctctctccttcgcctcc 1188
>ref|XM_955132.1| Neurospora crassa OR74A hypothetical protein (NCU04776.1) partial mRNA Length = 1257 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 8 ctctctctccttcgcctcc 26 ||||||||||||||||||| Sbjct: 1206 ctctctctccttcgcctcc 1188
>gb|AC021016.5| Homo sapiens BAC clone RP11-378A13 from 2, complete sequence Length = 191755 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 89 gcctctgcccttgcctctg 107 ||||||||||||||||||| Sbjct: 165578 gcctctgcccttgcctctg 165560
>gb|AC130731.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0692E03, complete sequence Length = 74462 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 acccactctctctccttcg 21 ||||||||||||||||||| Sbjct: 13455 acccactctctctccttcg 13437
>emb|AL356862.10| Human DNA sequence from clone RP11-1M19 on chromosome 9q34.11-34.3 Contains part of the RALGPS1A gene for Ral guanine nucleotide exchange factor RalGPS1A (RALGEF2, KIAA0351) and the ANGPTL2 gene for angiopoietin-like 2 (angiopoietin-related protein 2)(ARP2, HARP), complete sequence Length = 145481 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 90 cctctgcccttgcctctgc 108 ||||||||||||||||||| Sbjct: 75593 cctctgcccttgcctctgc 75611
>emb|BX897677.1| Neurospora crassa DNA linkage group VI BAC clone B15B10 Length = 77986 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 ctctctctccttcgcctcc 26 ||||||||||||||||||| Sbjct: 42077 ctctctctccttcgcctcc 42095
>emb|AL591430.8| Mouse DNA sequence from clone RP23-41B20 on chromosome 2 Contains the 5' end of the Cdh22 gene for cadherin 22, the Ovcov1 gene for ovarian cancer overexpressed 1, the Elmo2 gene for engulfment and cell motility 2, ced-12 homolog (C. elegans), the 3' end of a putative novel zinc finger protein and three CpG islands, complete sequence Length = 144243 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 92 tctgcccttgcctctgcgg 110 ||||||||||||||||||| Sbjct: 8708 tctgcccttgcctctgcgg 8726
>gb|AC023736.4| Drosophila melanogaster X BAC RP98-4P5 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 165052 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 ctctctctccttcgcctcc 26 ||||||||||||||||||| Sbjct: 164607 ctctctctccttcgcctcc 164625
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Minus Query: 3 acccactctctctccttcg 21 ||||||||||||||||||| Sbjct: 11240208 acccactctctctccttcg 11240190
>gb|AC018448.16|AC018448 Homo sapiens 12 BAC RP11-554L12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 167563 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 90 cctctgcccttgcctctgc 108 ||||||||||||||||||| Sbjct: 149133 cctctgcccttgcctctgc 149151
>gb|AC023696.4| Drosophila melanogaster X BAC RP98-17J10 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 174367 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 ctctctctccttcgcctcc 26 ||||||||||||||||||| Sbjct: 27942 ctctctctccttcgcctcc 27960
>emb|AL669967.12| Mouse DNA sequence from clone RP23-216M21 on chromosome X, complete sequence Length = 219583 Score = 38.2 bits (19), Expect = 7.1 Identities = 22/23 (95%) Strand = Plus / Plus Query: 86 tcggcctctgcccttgcctctgc 108 |||||||||||| |||||||||| Sbjct: 95648 tcggcctctgcctttgcctctgc 95670
>ref|XM_557901.1| Anopheles gambiae str. PEST ENSANGP00000026244 (ENSANGG00000023195), partial mRNA Length = 2121 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 107 gcgggtgtggcgcgatggg 125 ||||||||||||||||||| Sbjct: 1674 gcgggtgtggcgcgatggg 1692
>gb|AE003444.3| Drosophila melanogaster chromosome X, section 28 of 74 of the complete sequence Length = 299633 Score = 38.2 bits (19), Expect = 7.1 Identities = 19/19 (100%) Strand = Plus / Plus Query: 8 ctctctctccttcgcctcc 26 ||||||||||||||||||| Sbjct: 22396 ctctctctccttcgcctcc 22414 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,140,036 Number of Sequences: 3902068 Number of extensions: 1140036 Number of successful extensions: 86511 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 23 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 86361 Number of HSP's gapped (non-prelim): 150 length of query: 148 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 127 effective length of database: 17,151,101,840 effective search space: 2178189933680 effective search space used: 2178189933680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)