>IF2_THEFY (Q47RV1) Translation initiation factor IF-2|
          Length = 955

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 24/73 (32%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
 Frame = -2

Query: 301 GEPRALAHGGPLPAQRPAVRHDPLSRLHDLPR-PAAARPVMHGRAGSRSWL-----AASR 140
           G P + A G P P  RP  R  P++     P  P  ARP    R+G          A  R
Sbjct: 229 GRPGSSAGGPPRPVPRPGPRPSPMNMPASRPTPPGGARPSTSSRSGGGRGRGGGGGAGPR 288

Query: 139 IGGEDGWTDRGGY 101
            GG  G   R G+
Sbjct: 289 GGGAGGGAPRTGF 301

>5E5_RAT (Q63003) 5E5 antigen|
          Length = 825

 Score = 32.3 bits (72), Expect = 0.28
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
 Frame = -2

Query: 253 PAVRHDPLSRLHDLPRPAAARPVMHGRAGSRSWLAASRIGGED-GWTDRGGYLRALCGRR 77
           PA+   P +  H +P P  A   + GR    SW    R GG       RGG  R   GRR
Sbjct: 539 PALAGAPTAHAHAVPGPGPAAATLGGRGRRGSWRGGRRGGGAGASGGGRGGRGRGRGGRR 598

>IRS2_MOUSE (P81122) Insulin receptor substrate 2 (IRS-2) (4PS)|
          Length = 1321

 Score = 31.6 bits (70), Expect = 0.48
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +3

Query: 9    PSTPESPINFNQPXXXXXXXXXXXXPQSARKYPPLSVQPSSPPILLAASQDRLPARP 179
            PS+P+SP    +             P+++  YPPL  +PS+ P   ++ Q  LP  P
Sbjct: 975  PSSPKSPKPSTRSGDTVGSMDGLLSPEASSPYPPLPPRPSTSP---SSLQQPLPPAP 1028

>ICP0_HHV2H (P28284) Trans-acting transcriptional protein ICP0 (VMW118 protein)|
          Length = 825

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = -2

Query: 304 LGEPRALAHGGPLPAQRPAVRHDPLSRLHDLPRPAAARPVMHGRAGSRSWLAASRIGGED 125
           +GE  A A G   PA++P    +P   + D P P+  RP   G     S  +A    G  
Sbjct: 338 VGEDAAAAEGRTPPARQPRAAQEPPIVISDSPPPSPRRPAGPGPLSFVSSSSAQVSSGPG 397

Query: 124 G 122
           G
Sbjct: 398 G 398

>ADRB1_CANFA (P79148) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1|
           adrenoreceptor)
          Length = 473

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 18/37 (48%), Positives = 20/37 (54%)
 Frame = -2

Query: 271 PLPAQRPAVRHDPLSRLHDLPRPAAARPVMHGRAGSR 161
           P PA  PA    P S     PRPAAA P+ +GR G R
Sbjct: 275 PPPAPAPAPPPAPGS-----PRPAAAAPLANGRVGRR 306

>IF2_CHRVO (Q7NY13) Translation initiation factor IF-2|
          Length = 964

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 22/73 (30%), Positives = 26/73 (35%), Gaps = 9/73 (12%)
 Frame = -2

Query: 295 PRALAHGGPLPAQRPAVRHDPLSRLHDLPRPAAARPVMHGRAGSRSW-------LAASRI 137
           P      GP PA   A    P +     P P  +RP    + G RSW             
Sbjct: 293 PAGAGDRGPRPAPAAAAPSQPPA-----PAPGGSRPGKGKKGGERSWDDNKKGGRGLKTK 347

Query: 136 GGEDG--WTDRGG 104
           GG+ G  W  RGG
Sbjct: 348 GGDAGNDWKSRGG 360

>CRF_SHEEP (P01142) Corticoliberin precursor (Corticotropin-releasing factor)|
           (CRF) (Corticotropin-releasing hormone)
           (Endorpholiberin)
          Length = 190

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -2

Query: 292 RALAHGGPLPAQRPAVRH-DPLSRLHDLPRP 203
           RAL   GP+P  R A +H  PLS    LP+P
Sbjct: 23  RALLSRGPIPGARQASQHPQPLSFFQPLPQP 53

>Y3456_MYCBO (P67172) Hypothetical UPF0079 protein Mb3456c|
          Length = 168

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 236 VVPHSGPLGGKRSAMRKSARFAESVSAPLTAP 331
           VV  SGPLG  ++ + K    A  V  P+T+P
Sbjct: 46  VVVLSGPLGAGKTVLAKGIAMAMDVEGPITSP 77

>Y3422_MYCTU (P67171) Hypothetical UPF0079 protein Rv3422c/MT3531|
          Length = 168

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 236 VVPHSGPLGGKRSAMRKSARFAESVSAPLTAP 331
           VV  SGPLG  ++ + K    A  V  P+T+P
Sbjct: 46  VVVLSGPLGAGKTVLAKGIAMAMDVEGPITSP 77

>YLPM1_MOUSE (Q9R0I7) YLP motif-containing protein 1 (Nuclear protein ZAP3)|
          Length = 1386

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 102 YPPLSVQPSSPPILLAASQDRLPARPCI 185
           YPP S QP  PP   + S+ +LP  P I
Sbjct: 176 YPPSSAQPYLPPAQPSPSKPQLPPPPSI 203

>RELA_STRAT (O85709) GTP pyrophosphokinase (EC 2.7.6.5) (ATP:GTP|
           3'-pyrophosphotransferase) (ppGpp synthetase I)
           ((P)ppGpp synthetase)
          Length = 841

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
 Frame = -2

Query: 298 EPRALAH--GGPL------PAQRPAVRHDPLSRLHDLPRPAAARPVMHGRAGSRSWLAAS 143
           EP A A   GGP+      PA +PA R  P     + PRP   R    G+  +RS  +++
Sbjct: 22  EPAAHAQDGGGPVEHDRSAPADKPAERTRPKPAPPERPRPPPPRARAAGQPAARSGGSSN 81

Query: 142 RI 137
           R+
Sbjct: 82  RV 83

>CBP_HUMAN (Q92793) CREB-binding protein (EC 2.3.1.48)|
          Length = 2442

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 18/57 (31%), Positives = 23/57 (40%)
 Frame = +3

Query: 9    PSTPESPINFNQPXXXXXXXXXXXXPQSARKYPPLSVQPSSPPILLAASQDRLPARP 179
            PSTP++P    QP            P  AR  PP +V    P   + A     PA+P
Sbjct: 1897 PSTPQTPQPPAQPQPSPVSMSPAGFPSVARTQPPTTVSTGKPTSQVPAPPP--PAQP 1951

>UVRA_XANCP (Q8PBH3) UvrABC system protein A (UvrA protein) (Excinuclease ABC|
           subunit A)
          Length = 988

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -2

Query: 304 LGEPRALAHGGPLPAQRPAVRHDPLSRLHDLPRPAAARPVMHGRAGSRS 158
           +G+PR   HG PL AQ  +   D +  L    R     PV+  R G  +
Sbjct: 117 VGQPRCPDHGFPLEAQTVSQMVDHMLTLDPEQRYMLLAPVIRDRKGEHA 165

>TRUD_XANAC (Q8PLR6) tRNA pseudouridine synthase D (EC 5.4.99.-) (tRNA-uridine|
           isomerase D) (tRNA pseudouridylate synthase D)
          Length = 369

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/39 (35%), Positives = 16/39 (41%)
 Frame = -2

Query: 271 PLPAQRPAVRHDPLSRLHDLPRPAAARPVMHGRAGSRSW 155
           P P  R  +RHD  S L    R A    V+  R    SW
Sbjct: 192 PAPTSRRRLRHDQRSMLLSAARSALFNRVLGARVAQGSW 230

>LDB3_MOUSE (Q9JKS4) LIM domain-binding protein 3 (Z-band alternatively spliced|
           PDZ-motif protein) (Protein cypher) (Protein oracle)
          Length = 723

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = -3

Query: 345 RGAPCGAVSGADTDSANRALLRMADRFP--PRGPLCG 241
           RGAP    +G       R   + A+RFP   R PLCG
Sbjct: 512 RGAPAYNPTGPQVTPLARGTFQRAERFPASSRTPLCG 548


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.316    0.124    0.351 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,717,059
Number of Sequences: 219361
Number of extensions: 553135
Number of successful extensions: 2304
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2302
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 1391514312
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)