ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl11g09 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL670231.7| Mouse DNA sequence from clone RP23-329G7 on chromosome 4, complete sequence Length = 229957 Score = 46.1 bits (23), Expect = 0.083 Identities = 23/23 (100%) Strand = Plus / Minus Query: 52 gaaaaggaaaggaaaagatagag 74 ||||||||||||||||||||||| Sbjct: 175360 gaaaaggaaaggaaaagatagag 175338
>gb|AC124672.9| Mus musculus chromosome 1, clone RP23-328G14, complete sequence Length = 249008 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 52 gaaaaggaaaggaaaagataga 73 |||||||||||||||||||||| Sbjct: 192448 gaaaaggaaaggaaaagataga 192469
>gb|AC131116.3| Mus musculus BAC clone RP24-344M21 from chromosome 7, complete sequence Length = 190325 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 47 gaggagaaaaggaaaggaaaag 68 |||||||||||||||||||||| Sbjct: 138875 gaggagaaaaggaaaggaaaag 138896
>gb|AC072023.9| Homo sapiens 3 BAC RP11-3J2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 112405 Score = 44.1 bits (22), Expect = 0.33 Identities = 25/26 (96%) Strand = Plus / Plus Query: 48 aggagaaaaggaaaggaaaagataga 73 ||||||||| |||||||||||||||| Sbjct: 62666 aggagaaaaagaaaggaaaagataga 62691
>gb|AC122747.11| Mus musculus chromosome 9, clone RP23-217J11, complete sequence Length = 195755 Score = 44.1 bits (22), Expect = 0.33 Identities = 22/22 (100%) Strand = Plus / Plus Query: 51 agaaaaggaaaggaaaagatag 72 |||||||||||||||||||||| Sbjct: 153612 agaaaaggaaaggaaaagatag 153633
>ref|XM_482542.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1469 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 355 cgggaacgacgacgacggcga 375 ||||||||||||||||||||| Sbjct: 1028 cgggaacgacgacgacggcga 1048
>gb|AC105770.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1362_D02, complete sequence Length = 131860 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 354 gcgggaacgacgacgacggcg 374 ||||||||||||||||||||| Sbjct: 53224 gcgggaacgacgacgacggcg 53244
>gb|AC149237.1| Pan troglodytes chromosome X clone RP43-049A09 map human ortholog q28, complete sequence Length = 168371 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 53 aaaaggaaaggaaaagatagagagg 77 ||||||||||||||||| ||||||| Sbjct: 125414 aaaaggaaaggaaaagaaagagagg 125390
>gb|AC149235.1| Pan troglodytes chromosome X clone PTB-100E10 map human ortholog q28, complete sequence Length = 183411 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 53 aaaaggaaaggaaaagatagagagg 77 ||||||||||||||||| ||||||| Sbjct: 34524 aaaaggaaaggaaaagaaagagagg 34500
>emb|AL593853.11| Mouse DNA sequence from clone RP23-199A2 on chromosome 11 Contains the 5' end of a novel gene, the Sfrs1 gene for arginine/serine-rich splicing factor 1 (ASF/SF2), the Vezf1 gene for vascular endothelial zinc finger 1, a novel gene (2210416O15Rik), the gene for the likely ortholog of H. sapiens CUE domain containing 1 CUEDC1 (C330016O16Rik), the Mrps23 gene for mitochondrial ribosomal protein S23 and two CpG islands, complete sequence Length = 223276 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 51 agaaaaggaaaggaaaagatagaga 75 ||||||||||||||||||| ||||| Sbjct: 25201 agaaaaggaaaggaaaagaaagaga 25177
>gb|AC087487.14| Homo sapiens chromosome 15, clone RP11-698F12, complete sequence Length = 180232 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 49 ggagaaaaggaaaggaaaaga 69 ||||||||||||||||||||| Sbjct: 7982 ggagaaaaggaaaggaaaaga 8002
>gb|AC068867.9| Homo sapiens chromosome 15, clone RP11-702M1, complete sequence Length = 179455 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 49 ggagaaaaggaaaggaaaaga 69 ||||||||||||||||||||| Sbjct: 44795 ggagaaaaggaaaggaaaaga 44775
>gb|AC090815.3| Homo sapiens chromosome 15, clone RP11-1078O1, complete sequence Length = 180352 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 49 ggagaaaaggaaaggaaaaga 69 ||||||||||||||||||||| Sbjct: 120805 ggagaaaaggaaaggaaaaga 120825
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 355 cgggaacgacgacgacggcga 375 ||||||||||||||||||||| Sbjct: 20967477 cgggaacgacgacgacggcga 20967457 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 ggaacgacgacgacggcgac 376 |||||||||||||||||||| Sbjct: 20158483 ggaacgacgacgacggcgac 20158502 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 gagaaaaggaaaggaaaaga 69 |||||||||||||||||||| Sbjct: 1217396 gagaaaaggaaaggaaaaga 1217377
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 354 gcgggaacgacgacgacggcg 374 ||||||||||||||||||||| Sbjct: 22351589 gcgggaacgacgacgacggcg 22351609
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 49 ggagaaaaggaaaggaaaaga 69 ||||||||||||||||||||| Sbjct: 24586584 ggagaaaaggaaaggaaaaga 24586604 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 acgacgacgacggcgactac 379 |||||||||||||||||||| Sbjct: 28006538 acgacgacgacggcgactac 28006557
>dbj|AP003328.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1040D09 Length = 148102 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 49 ggagaaaaggaaaggaaaaga 69 ||||||||||||||||||||| Sbjct: 12547 ggagaaaaggaaaggaaaaga 12567
>gb|AC023881.6| Homo sapiens BAC clone RP11-108C2 from 2, complete sequence Length = 185802 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 51 agaaaaggaaaggaaaagata 71 ||||||||||||||||||||| Sbjct: 177051 agaaaaggaaaggaaaagata 177071
>gb|AC005731.2| Human X BAC RP11-159I8 (Roswell Park Cancer Institute Human BAC Library), Cosmid LL0XNC01-3C3 (LLNL X Chromosome Library), and BAC GS1-92B2 (Genome Systems Human BAC Library) complete sequence Length = 143944 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 53 aaaaggaaaggaaaagatagagagg 77 ||||||||||||||||| ||||||| Sbjct: 66260 aaaaggaaaggaaaagaaagagagg 66236
>dbj|AP004666.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0431A03 Length = 149500 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 355 cgggaacgacgacgacggcga 375 ||||||||||||||||||||| Sbjct: 33652 cgggaacgacgacgacggcga 33632
>dbj|AK109616.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-H01, full insert sequence Length = 1469 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 355 cgggaacgacgacgacggcga 375 ||||||||||||||||||||| Sbjct: 1028 cgggaacgacgacgacggcga 1048
>emb|AL845170.5| Mouse DNA sequence from clone RP23-282A22 on chromosome 2, complete sequence Length = 183985 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 49 ggagaaaaggaaaggaaaaga 69 ||||||||||||||||||||| Sbjct: 101304 ggagaaaaggaaaggaaaaga 101284
>gb|AC154193.2| Mus musculus BAC clone RP24-398A6 from chromosome 14, complete sequence Length = 161686 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 48 aggagaaaaggaaaggaaaagata 71 |||||||||||||| ||||||||| Sbjct: 11201 aggagaaaaggaaaagaaaagata 11224
>gb|AC152821.5| Mus musculus BAC clone RP24-366H21 from chromosome y, complete sequence Length = 179613 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 51 agaaaaggaaaggaaaagatagag 74 ||||||||||||||| |||||||| Sbjct: 114601 agaaaaggaaaggaagagatagag 114578
>ref|NM_192046.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 888 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 acgacgacgacggcgactac 379 |||||||||||||||||||| Sbjct: 542 acgacgacgacggcgactac 561
>ref|XM_478876.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1206 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 cgggaacgacgacgacggcg 374 |||||||||||||||||||| Sbjct: 387 cgggaacgacgacgacggcg 368
>gb|AY359532.1| Callinectes sapidus clone CSC-003 microsatellite sequences Length = 451 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 acgacgacgacggcgactac 379 |||||||||||||||||||| Sbjct: 167 acgacgacgacggcgactac 186
>gb|AC114342.12| Mus musculus chromosome 5, clone RP24-143H14, complete sequence Length = 171509 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 gagaaaaggaaaggaaaaga 69 |||||||||||||||||||| Sbjct: 38386 gagaaaaggaaaggaaaaga 38405
>gb|AC124212.2| Mus musculus chromosome X clone CT7-532E7 map qA7.1, complete sequence Length = 109783 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 aaaggaaaggaaaagataga 73 |||||||||||||||||||| Sbjct: 9979 aaaggaaaggaaaagataga 9960
>gb|AC150661.6| Mus musculus BAC clone RP23-6A9 from chromosome 12, complete sequence Length = 234903 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 52 gaaaaggaaaggaaaagatagaga 75 |||||||||||||||| ||||||| Sbjct: 28643 gaaaaggaaaggaaaaaatagaga 28666
>gb|AC161537.7| Mus musculus chromosome 15, clone RP23-471J11, complete sequence Length = 188471 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 cctctcctcctatcctgcta 146 |||||||||||||||||||| Sbjct: 168137 cctctcctcctatcctgcta 168118
>gb|AC118639.12| Mus musculus chromosome 15, clone RP24-112I4, complete sequence Length = 166053 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 cctctcctcctatcctgcta 146 |||||||||||||||||||| Sbjct: 134021 cctctcctcctatcctgcta 134040
>gb|AC135808.4| Mus musculus BAC clone RP24-316N5 from chromosome Y, complete sequence Length = 149744 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 51 agaaaaggaaaggaaaagatagag 74 ||||||||||||||| |||||||| Sbjct: 2787 agaaaaggaaaggaagagatagag 2810
>gb|AC009135.12| Homo sapiens chromosome 16 clone RP11-509E10, complete sequence Length = 221640 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 gaggagaaaaggaaaggaaa 66 |||||||||||||||||||| Sbjct: 18538 gaggagaaaaggaaaggaaa 18519
>gb|AC125543.3| Mus musculus BAC clone RP23-360H5 from chromosome 12, complete sequence Length = 184081 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 52 gaaaaggaaaggaaaagatagaga 75 |||||||||||||||| ||||||| Sbjct: 118697 gaaaaggaaaggaaaaaatagaga 118720
>gb|AC112523.5| Mus musculus BAC clone RP23-418K6 from chromosome 16, complete sequence Length = 186848 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 53 aaaaggaaaggaaaagatagagag 76 ||||||||||||||||| |||||| Sbjct: 71425 aaaaggaaaggaaaagaaagagag 71402
>gb|AC146173.2| Pan troglodytes BAC clone RP43-36F20 from 7, complete sequence Length = 197121 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 52 gaaaaggaaaggaaaagatagaga 75 |||||||||||||||||| ||||| Sbjct: 127635 gaaaaggaaaggaaaagaaagaga 127612
>gb|AC073886.4| Homo sapiens BAC clone RP11-101N13 from 7, complete sequence Length = 112568 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 aaaggaaaggaaaagataga 73 |||||||||||||||||||| Sbjct: 33590 aaaggaaaggaaaagataga 33571
>emb|Z93403.1|HS308O1 Human DNA sequence from clone RP1-308O1 on chromosome Xp11.3-11.4 Contains part of a novel gene, complete sequence Length = 166715 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 56 aggaaaggaaaagatagaga 75 |||||||||||||||||||| Sbjct: 148469 aggaaaggaaaagatagaga 148450
>emb|AL450487.17| Human DNA sequence from clone RP11-314A15 on chromosome Xq12-13.3 Contains a eukaryotic translation termination factor 1 (ETF1) pseudogene, a cyclin fold protein 1 (CFP1) pseudogene and a CpG island, complete sequence Length = 159093 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 aaaggaaaggaaaagataga 73 |||||||||||||||||||| Sbjct: 147431 aaaggaaaggaaaagataga 147450
>emb|AL139405.11| Human DNA sequence from clone RP11-393E10 on chromosome 10 Contains the 5' end of a variant of the gene for a novel protein (FLJ10210) and the 3' end of the gene for a novel protein (MGC11034), complete sequence Length = 179829 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 54 aaaggaaaggaaaagatagagagg 77 |||||||||||||||| ||||||| Sbjct: 70761 aaaggaaaggaaaagaaagagagg 70784
>emb|AL136124.10| Human DNA sequence from clone RP4-792D7 on chromosome 1q42.2-43 Contains the 5' end of the TARBP1 gene for TAR (HIV) RNA binding protein 1 and a CpG island, complete sequence Length = 104632 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 gagaaaaggaaaggaaaaga 69 |||||||||||||||||||| Sbjct: 77563 gagaaaaggaaaggaaaaga 77544
>gb|AC163089.3| Mus musculus chromosome 5, clone RP23-346P15, complete sequence Length = 197826 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 gagaaaaggaaaggaaaaga 69 |||||||||||||||||||| Sbjct: 120021 gagaaaaggaaaggaaaaga 120040
>emb|X73282.1|CPGPD Claviceps purpurea GPD 1 gene for glyceraldehyde-3-phosphate dehydrogenase Length = 3495 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 47 gaggagaaaaggaaaggaaaagat 70 ||||||||||||||||| |||||| Sbjct: 1563 gaggagaaaaggaaagggaaagat 1540
>emb|AL939122.1|SCO939122 Streptomyces coelicolor A3(2) complete genome; segment 19/29 Length = 311000 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 353 ggcgggaacgacgacgacggcgac 376 |||||||||||||||| ||||||| Sbjct: 183671 ggcgggaacgacgacgccggcgac 183694
>emb|AL645599.14| Mouse DNA sequence from clone RP23-285F4 on chromosome 11 Contains the 5' end of a novel gene, a ribosomal protein L7A (Rpl7a) pseudogene and a CpG island, complete sequence Length = 127405 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 gaggagaaaaggaaaggaaa 66 |||||||||||||||||||| Sbjct: 105107 gaggagaaaaggaaaggaaa 105088
>emb|BX530030.12| Zebrafish DNA sequence from clone DKEY-38K9 in linkage group 21, complete sequence Length = 180154 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 ggagaaaaggaaaggaaaag 68 |||||||||||||||||||| Sbjct: 71574 ggagaaaaggaaaggaaaag 71593
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 159 gaccggctgccggcgcggccatgc 182 ||||||| |||||||||||||||| Sbjct: 2052040 gaccggcagccggcgcggccatgc 2052017
>gb|AC023716.4| Drosophila melanogaster X BAC RP98-45E21 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 169124 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 53 aaaaggaaaggaaaagatagagag 76 ||||||||||||||||| |||||| Sbjct: 137996 aaaaggaaaggaaaagaaagagag 137973
>gb|AC024678.10| Homo sapiens chromosome 8, clone RP11-564K10, complete sequence Length = 170788 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 gagaaaaggaaaggaaaaga 69 |||||||||||||||||||| Sbjct: 108793 gagaaaaggaaaggaaaaga 108774
>gb|AF488809.1| Aedes albopictus inhibitor of apotosis protein 1-like protein mRNA, complete cds Length = 1515 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 361 cgacgacgacggcgactacg 380 |||||||||||||||||||| Sbjct: 64 cgacgacgacggcgactacg 45
>gb|AC183287.1| Pan troglodytes chromosome X clone CH251-59K17 map human ortholog p11.4, complete sequence Length = 225601 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 56 aggaaaggaaaagatagaga 75 |||||||||||||||||||| Sbjct: 122644 aggaaaggaaaagatagaga 122663
>gb|AC022150.6| Homo sapiens chromosome 19 clone CTD-3099C6, complete sequence Length = 228156 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 aaaggaaaggaaaagataga 73 |||||||||||||||||||| Sbjct: 177965 aaaggaaaggaaaagataga 177946
>gb|AC026795.6| Homo sapiens chromosome 5 clone CTD-2287L22, complete sequence Length = 156277 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 aaaggaaaggaaaagataga 73 |||||||||||||||||||| Sbjct: 73786 aaaggaaaggaaaagataga 73805
>dbj|AB168181.1| Macaca fascicularis testis cDNA clone: QtsA-10359, similar to human EH-domain containing 2 (EHD2), mRNA, RefSeq: NM_014601.2 Length = 3560 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 54 aaaggaaaggaaaagatagagagg 77 |||||||||||||||| ||||||| Sbjct: 2680 aaaggaaaggaaaagagagagagg 2657
>gb|AC027338.5| Homo sapiens chromosome 5 clone CTD-2227C6, complete sequence Length = 117813 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 aaaggaaaggaaaagataga 73 |||||||||||||||||||| Sbjct: 62424 aaaggaaaggaaaagataga 62443
>gb|AC008597.8| Homo sapiens chromosome 5 clone CTB-102L23, complete sequence Length = 69479 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 aaaggaaaggaaaagataga 73 |||||||||||||||||||| Sbjct: 55024 aaaggaaaggaaaagataga 55043
>gb|AC148664.1| Macaca mulatta Major Histocompatibility Complex BAC MMU021E24, complete sequence Length = 189424 Score = 40.1 bits (20), Expect = 5.1 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 50 gagaaaaggaaaggaaaagatagagagg 77 |||||||||||||| ||||||||||||| Sbjct: 120898 gagaaaaggaaagg-aaagatagagagg 120924
>gb|AC156616.5| Mus musculus chromosome 3, clone RP24-158L2, complete sequence Length = 127112 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 53 aaaaggaaaggaaaagatag 72 |||||||||||||||||||| Sbjct: 89285 aaaaggaaaggaaaagatag 89304
>gb|AC024564.4|AC024564 Homo sapiens chromosome 5 clone CTC-532M5, complete sequence Length = 176621 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 aaaggaaaggaaaagataga 73 |||||||||||||||||||| Sbjct: 31401 aaaggaaaggaaaagataga 31382
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 355 cgggaacgacgacgacggcg 374 |||||||||||||||||||| Sbjct: 23431213 cgggaacgacgacgacggcg 23431232 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 54 aaaggaaaggaaaagatagagagg 77 |||||||||||||||| ||||||| Sbjct: 52619 aaaggaaaggaaaagaaagagagg 52642
>gb|AC023829.6| Homo sapiens chromosome 16 clone RP11-578P21, complete sequence Length = 161477 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 gaggagaaaaggaaaggaaa 66 |||||||||||||||||||| Sbjct: 85146 gaggagaaaaggaaaggaaa 85127
>gb|AC154757.2| Mus musculus BAC clone RP23-116J1 from chromosome 14, complete sequence Length = 202303 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 48 aggagaaaaggaaaggaaaagata 71 |||||||||||||| ||||||||| Sbjct: 8573 aggagaaaaggaaaagaaaagata 8550
>gb|AC146077.4| Pan troglodytes BAC clone RP43-45A15 from chromosome 7, complete sequence Length = 188174 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 aaaggaaaggaaaagataga 73 |||||||||||||||||||| Sbjct: 66113 aaaggaaaggaaaagataga 66132
>gb|AC158234.2| Mus musculus BAC clone RP23-149C23 from chromosome 16, complete sequence Length = 227632 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 53 aaaaggaaaggaaaagatagagag 76 ||||||||||||||||| |||||| Sbjct: 115425 aaaaggaaaggaaaagaaagagag 115448
>gb|AC159235.2| Mus musculus BAC clone RP24-432L4 from chromosome ul, complete sequence Length = 133340 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 51 agaaaaggaaaggaaaagatagag 74 ||||||||||||||| |||||||| Sbjct: 77785 agaaaaggaaaggaagagatagag 77762
>gb|AC129951.9| Mus musculus chromosome 15, clone RP23-127B14, complete sequence Length = 211987 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 58 gaaaggaaaagatagagagg 77 |||||||||||||||||||| Sbjct: 31519 gaaaggaaaagatagagagg 31500
>gb|AC006508.2|AC006508 Mus musculus Yp BAC GSMB-187H15 (Genome Systems Mouse BAC Library) complete sequence Length = 185286 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 gagaaaaggaaaggaaaaga 69 |||||||||||||||||||| Sbjct: 28388 gagaaaaggaaaggaaaaga 28407
>gb|AC102178.21| Mus musculus chromosome 7, clone RP24-70C24, complete sequence Length = 190370 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 gagaaaaggaaaggaaaaga 69 |||||||||||||||||||| Sbjct: 94752 gagaaaaggaaaggaaaaga 94733
>gb|AC138612.1| Homo sapiens BAC clone CTD-2293E22 from 2, complete sequence Length = 158057 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 aaaggaaaggaaaagataga 73 |||||||||||||||||||| Sbjct: 81020 aaaggaaaggaaaagataga 81039
>dbj|AP004363.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0019E03 Length = 152092 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 acgacgacgacggcgactac 379 |||||||||||||||||||| Sbjct: 21737 acgacgacgacggcgactac 21756
>dbj|AP006723.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1203H11 Length = 156561 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 gagaaaaggaaaggaaaaga 69 |||||||||||||||||||| Sbjct: 130633 gagaaaaggaaaggaaaaga 130614
>dbj|AP005730.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0073J19 Length = 165174 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 gagaaaaggaaaggaaaaga 69 |||||||||||||||||||| Sbjct: 46703 gagaaaaggaaaggaaaaga 46684
>dbj|AP003335.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1144G04 Length = 194459 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 acgacgacgacggcgactac 379 |||||||||||||||||||| Sbjct: 193219 acgacgacgacggcgactac 193238
>dbj|AP005869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1026C12 Length = 170240 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 54 aaaggaaaggaaaagatagagagg 77 |||||||||||||||| ||||||| Sbjct: 51918 aaaggaaaggaaaagaaagagagg 51941
>dbj|AP004276.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0453G03 Length = 144480 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 355 cgggaacgacgacgacggcg 374 |||||||||||||||||||| Sbjct: 51110 cgggaacgacgacgacggcg 51129
>emb|BX571879.8| Zebrafish DNA sequence from clone DKEY-238C7 in linkage group 18, complete sequence Length = 252198 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 110 tctgtctgtccaaccatcct 129 |||||||||||||||||||| Sbjct: 106520 tctgtctgtccaaccatcct 106501
>emb|AL928668.7| Zebrafish DNA sequence from clone CH211-208M1, complete sequence Length = 241975 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 ggagaaaaggaaaggaaaag 68 |||||||||||||||||||| Sbjct: 138094 ggagaaaaggaaaggaaaag 138075
>dbj|AP005301.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0077M12 Length = 145337 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 ggaacgacgacgacggcgac 376 |||||||||||||||||||| Sbjct: 24269 ggaacgacgacgacggcgac 24288
>dbj|AP004005.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1188_F05 Length = 117045 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 357 ggaacgacgacgacggcgac 376 |||||||||||||||||||| Sbjct: 105029 ggaacgacgacgacggcgac 105048
>dbj|AP006617.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0091F23 Length = 147699 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 gagaaaaggaaaggaaaaga 69 |||||||||||||||||||| Sbjct: 84475 gagaaaaggaaaggaaaaga 84456
>dbj|AK106748.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-C06, full insert sequence Length = 1206 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 cgggaacgacgacgacggcg 374 |||||||||||||||||||| Sbjct: 387 cgggaacgacgacgacggcg 368
>dbj|AK106055.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-206-F07, full insert sequence Length = 987 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 acgacgacgacggcgactac 379 |||||||||||||||||||| Sbjct: 554 acgacgacgacggcgactac 573
>dbj|AK069325.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023017M17, full insert sequence Length = 1824 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 acgacgacgacggcgactac 379 |||||||||||||||||||| Sbjct: 922 acgacgacgacggcgactac 903
>gb|AC147616.3| Mus musculus BAC clone RP23-433L22 from 8, complete sequence Length = 182152 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 gagaaaaggaaaggaaaaga 69 |||||||||||||||||||| Sbjct: 58783 gagaaaaggaaaggaaaaga 58764
>gb|AC145393.4| Mus musculus BAC clone RP24-208N6 from Y, complete sequence Length = 167299 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 gagaaaaggaaaggaaaaga 69 |||||||||||||||||||| Sbjct: 65800 gagaaaaggaaaggaaaaga 65781
>dbj|AK060930.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-A10, full insert sequence Length = 1061 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 360 acgacgacgacggcgactac 379 |||||||||||||||||||| Sbjct: 602 acgacgacgacggcgactac 621
>emb|CT573208.8| Zebrafish DNA sequence from clone CH73-52H17 in linkage group 13, complete sequence Length = 44002 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 aggagaaaaggaaaggaaaa 67 |||||||||||||||||||| Sbjct: 43961 aggagaaaaggaaaggaaaa 43980
>gb|AE003450.4| Drosophila melanogaster chromosome X, section 34 of 74 of the complete sequence Length = 232514 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 53 aaaaggaaaggaaaagatagagag 76 ||||||||||||||||| |||||| Sbjct: 62857 aaaaggaaaggaaaagaaagagag 62834
>gb|AC134462.5| Mus musculus BAC clone RP23-391L12 from chromosome 12, complete sequence Length = 197870 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 52 gaaaaggaaaggaaaagatagaga 75 |||||||||||||||| ||||||| Sbjct: 99777 gaaaaggaaaggaaaaaatagaga 99754
>emb|AL935060.17| Mouse DNA sequence from clone RP24-151H6 on chromosome 2, complete sequence Length = 212007 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 gagaaaaggaaaggaaaaga 69 |||||||||||||||||||| Sbjct: 73893 gagaaaaggaaaggaaaaga 73912
>gb|AC164120.2| Mus musculus BAC clone RP24-289J17 from chromosome 14, complete sequence Length = 147050 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 gaggagaaaaggaaaggaaa 66 |||||||||||||||||||| Sbjct: 32345 gaggagaaaaggaaaggaaa 32326
>gb|AC149052.3| Mus musculus BAC clone RP24-548O1 from 7, complete sequence Length = 209182 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 48 aggagaaaaggaaaggaaaagata 71 |||||||||| ||||||||||||| Sbjct: 43611 aggagaaaagcaaaggaaaagata 43634
>gb|AC149282.2| Mus musculus BAC clone RP23-236D19 from 7, complete sequence Length = 221553 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 48 aggagaaaaggaaaggaaaagata 71 |||||||||| ||||||||||||| Sbjct: 7906 aggagaaaagcaaaggaaaagata 7883
>emb|AL929534.12| Mouse DNA sequence from clone RP23-275L13 on chromosome 2, complete sequence Length = 190466 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 47 gaggagaaaaggaaaggaaa 66 |||||||||||||||||||| Sbjct: 116841 gaggagaaaaggaaaggaaa 116860
>emb|AL671874.17| Mouse DNA sequence from clone RP23-169I24 on chromosome X, complete sequence Length = 187669 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 54 aaaggaaaggaaaagataga 73 |||||||||||||||||||| Sbjct: 128461 aaaggaaaggaaaagataga 128442
>emb|AL805921.7| Mouse DNA sequence from clone RP23-293N9 on chromosome 4, complete sequence Length = 162090 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 47 gaggagaaaaggaaaggaaa 66 |||||||||||||||||||| Sbjct: 113874 gaggagaaaaggaaaggaaa 113855
>gb|AC166358.5| Mus musculus BAC clone RP23-338N2 from chromosome 12, complete sequence Length = 226310 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 52 gaaaaggaaaggaaaagatagaga 75 |||||||||||||||| ||||||| Sbjct: 198181 gaaaaggaaaggaaaaaatagaga 198158
>emb|AL365334.13| Mouse DNA sequence from clone RP23-392F1 on chromosome 1, complete sequence Length = 173053 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 ggagaaaaggaaaggaaaag 68 |||||||||||||||||||| Sbjct: 124501 ggagaaaaggaaaggaaaag 124520 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,626,175 Number of Sequences: 3902068 Number of extensions: 2626175 Number of successful extensions: 84891 Number of sequences better than 10.0: 99 Number of HSP's better than 10.0 without gapping: 101 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 84227 Number of HSP's gapped (non-prelim): 665 length of query: 383 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 361 effective length of database: 17,147,199,772 effective search space: 6190139117692 effective search space used: 6190139117692 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
