ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl11g08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYFA_HUMAN (Q9Y285) Phenylalanyl-tRNA synthetase alpha chain (EC... 28 7.2

>SYFA_HUMAN (Q9Y285) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)|
           (Phenylalanine--tRNA ligase alpha chain) (PheRS) (CML33)
          Length = 507

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = -1

Query: 194 LCRLLAHPRPPPERDEA 144
           LCRL A PRPPP ++ A
Sbjct: 491 LCRLDAEPRPPPTQEAA 507


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.315    0.119    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,234,424
Number of Sequences: 219361
Number of extensions: 231085
Number of successful extensions: 450
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 80,573,946
effective HSP length: 97
effective length of database: 59,295,929
effective search space used: 1423102296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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