Clone Information

BLAST Search Result

Clone Name	bastl11g02
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subun...	227	6e-60
2	RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subun...	142	1e-34
3	RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subun...	142	1e-34
4	RPB1_DICDI (P35084) DNA-directed RNA polymerase II largest subun...	139	2e-33
5	RPB1_ASHGO (Q75A34) DNA-directed RNA polymerase II largest subun...	133	1e-31
6	RPB1_SCHPO (P36594) DNA-directed RNA polymerase II largest subun...	132	3e-31
7	RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subun...	131	4e-31
8	RPB1_CAEBR (P35074) DNA-directed RNA polymerase II largest subun...	130	1e-30
9	RPB1_YEAST (P04050) DNA-directed RNA polymerase II largest subun...	127	8e-30
10	RPB1_DROME (P04052) DNA-directed RNA polymerase II largest subun...	125	3e-29
11	RPB2_TRYBB (P17546) DNA-directed RNA polymerase II largest subun...	81	5e-16
12	RPB1_TRYBB (P17545) DNA-directed RNA polymerase II largest subun...	81	5e-16
13	RPB1_PLAFD (P14248) DNA-directed RNA polymerase II largest subun...	65	3e-11
14	RPB1_ENCCU (Q8SSC4) DNA-directed RNA polymerase II largest subun...	59	2e-09
15	RPOA2_PYRFU (Q8U0M5) DNA-directed RNA polymerase subunit A'' (EC...	38	0.005
16	RPOA2_PYRAB (Q9V113) DNA-directed RNA polymerase subunit A'' (EC...	37	0.011
17	RPO1_MIMIV (Q7T6X5) DNA-directed RNA polymerase subunit 1 (EC 2....	37	0.015
18	RPOA2_PYRHO (O93777) DNA-directed RNA polymerase subunit A'' (EC...	36	0.025
19	RPOA2_THECE (P29158) DNA-directed RNA polymerase subunit A'' (EC...	33	0.13
20	RPOA2_PYRKO (Q5JE34) DNA-directed RNA polymerase subunit A'' (EC...	33	0.22
21	COX1_ORTHI (Q6EGI3) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) ...	30	1.1
22	AGTR1_SHEEP (O77590) Type-1 angiotensin II receptor (AT1)	29	2.4
23	AGTR1_RABIT (P34976) Type-1 angiotensin II receptor (AT1)	29	2.4
24	AGTR1_PIG (P30555) Type-1 angiotensin II receptor (AT1)	29	2.4
25	AGTR1_PANTR (Q9GLN9) Type-1 angiotensin II receptor (AT1)	29	2.4
26	AGTR1_MERUN (O35210) Type-1 angiotensin II receptor (AT1) (GKAT1)	29	2.4
27	AGTR1_HUMAN (P30556) Type-1 angiotensin II receptor (AT1) (AT1AR...	29	2.4
28	AGTR1_BOVIN (P25104) Type-1 angiotensin II receptor (AT1)	29	2.4
29	RPOA2_AERPE (Q9YAU2) DNA-directed RNA polymerase subunit A'' (EC...	29	2.4
30	COX1_ZYGTR (Q6EGH7) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) ...	29	3.1
31	RPOC_BUCBP (Q89B21) DNA-directed RNA polymerase beta' chain (EC ...	29	3.1
32	ACHA_BRARE (Q98880) Acetylcholine receptor protein, alpha subuni...	28	4.1
33	AGTRB_RAT (P29089) Type-1B angiotensin II receptor (AT1B) (AT3)	28	4.1
34	AGTRB_MOUSE (P29755) Type-1B angiotensin II receptor (AT1B) (AT3)	28	4.1
35	AGTRA_RAT (P25095) Type-1A angiotensin II receptor (AT1) (AT1A)	28	4.1
36	AGTRA_MOUSE (P29754) Type-1A angiotensin II receptor (AT1) (AT1A)	28	4.1
37	COX1_ORTUN (Q6EGI4) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) ...	28	4.1
38	RPOA2_SULSO (P58192) DNA-directed RNA polymerase subunit A'' (EC...	28	4.1
39	RPOA2_SULAC (P11514) DNA-directed RNA polymerase subunit A'' (EC...	28	4.1
40	ACHA_CHICK (P09479) Acetylcholine receptor protein, alpha subuni...	28	5.3
41	AGTR1_CAVPO (Q9WV26) Type-1 angiotensin II receptor (AT1)	28	5.3
42	ZNF35_MOUSE (P15620) Zinc finger protein 35 (Zfp-35)	28	5.3
43	ATKA_CAUCR (Q9A7X8) Potassium-transporting ATPase A chain (EC 3....	28	6.9
44	POLG_HCVK3 (Q81495) Genome polyprotein [Contains: Core protein p...	28	6.9
45	YL075_MIMIV (Q5UPE8) Hypothetical protein L75	28	6.9
46	COX1_CROLA (P34188) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) ...	28	6.9
47	ZN544_HUMAN (Q6NX49) Zinc finger protein 544	27	9.1
48	DGTL1_STRAW (Q82BN0) Deoxyguanosinetriphosphate triphosphohydrol...	27	9.1
49	MP44_YLDV (Q9DHR2) Probable metalloendopeptidase G1-type (EC 3.4...	27	9.1
50	MENF_ECOLI (P38051) Menaquinone-specific isochorismate synthase ...	27	9.1

>RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1840

 Score =  227 bits (578), Expect = 6e-60
 Identities = 109/129 (84%), Positives = 123/129 (95%)
 Frame = +2

Query: 5    QLGTEITTTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVV 184
            QLGTEI T GD+TWP+PVN+KR IWNAQKTFKIDLR+ SDMHP+EIV+A+DKLQERL VV
Sbjct: 962  QLGTEIATNGDSTWPLPVNIKRHIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLVV 1021

Query: 185  PGDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKESFEWVIGEIESRFLQSLVAP 364
            PGDDA+S+EAQKNATLFFNILLRST ASKRVL+EY+L++E+FEWVIGEIESRFLQSLVAP
Sbjct: 1022 PGDDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVAP 1081

Query: 365  GEMIGCVAA 391
            GEMIGCVAA
Sbjct: 1082 GEMIGCVAA 1090

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>RPB1_MOUSE (P08775) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RPB1)
          Length = 1970

 Score =  142 bits (359), Expect = 1e-34
 Identities = 66/124 (53%), Positives = 96/124 (77%)
 Frame = +2

Query: 20   ITTTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDA 199
            I  TGD+   +P NL R+IWNAQK F I+ R PSD+HP+++VE + +L ++L +V GDD 
Sbjct: 969  IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP 1028

Query: 200  MSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKESFEWVIGEIESRFLQSLVAPGEMIG 379
            +S +AQ+NATL FNI LRST  S+R+ +E+RL+ E+F+W++GEIES+F Q++  PGEM+G
Sbjct: 1029 LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1088

Query: 380  CVAA 391
             +AA
Sbjct: 1089 ALAA 1092

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>RPB1_HUMAN (P24928) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RPB1)
          Length = 1970

 Score =  142 bits (359), Expect = 1e-34
 Identities = 66/124 (53%), Positives = 96/124 (77%)
 Frame = +2

Query: 20   ITTTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDA 199
            I  TGD+   +P NL R+IWNAQK F I+ R PSD+HP+++VE + +L ++L +V GDD 
Sbjct: 969  IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELSKKLVIVNGDDP 1028

Query: 200  MSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKESFEWVIGEIESRFLQSLVAPGEMIG 379
            +S +AQ+NATL FNI LRST  S+R+ +E+RL+ E+F+W++GEIES+F Q++  PGEM+G
Sbjct: 1029 LSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVG 1088

Query: 380  CVAA 391
             +AA
Sbjct: 1089 ALAA 1092

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>RPB1_DICDI (P35084) DNA-directed RNA polymerase II largest subunit (EC|
           2.7.7.6) (Fragment)
          Length = 902

 Score =  139 bits (350), Expect = 2e-33
 Identities = 73/137 (53%), Positives = 95/137 (69%), Gaps = 9/137 (6%)
 Frame = +2

Query: 8   LGTEITTTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVP 187
           L  EI  +G+  WP+PVNL+RLI NAQK F ID+RR SD++P  +V  I+KL  RLK++ 
Sbjct: 127 LRNEIIPSGEANWPLPVNLRRLINNAQKLFNIDIRRVSDLNPAVVVLEIEKLVARLKIIA 186

Query: 188 GDDAMS---------IEAQKNATLFFNILLRSTFASKRVLKEYRLTKESFEWVIGEIESR 340
             D             E   NAT+ F+IL+RSTFASKRVL E+RLT+++F WV GEIES+
Sbjct: 187 TADTTEDDENFNRAWAEVYFNATMLFSILVRSTFASKRVLTEFRLTEKAFLWVCGEIESK 246

Query: 341 FLQSLVAPGEMIGCVAA 391
           FLQ+L  PGEM+G +AA
Sbjct: 247 FLQALAHPGEMVGALAA 263

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>RPB1_ASHGO (Q75A34) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RNA polymerase II subunit 1)
          Length = 1745

 Score =  133 bits (334), Expect = 1e-31
 Identities = 62/125 (49%), Positives = 93/125 (74%)
 Frame = +2

Query: 17   EITTTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDD 196
            +I   G++ WP+PVN++R+I NAQ+TF+ID  +P+D+   ++V+ +  LQERL V+ G  
Sbjct: 945  KIFMDGEHNWPLPVNIRRIIQNAQQTFRIDSTKPTDLSIQDVVQGVRGLQERLLVLRGKS 1004

Query: 197  AMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKESFEWVIGEIESRFLQSLVAPGEMI 376
             +  EAQ+NA   F  LLRS  A++RV+ EYRLTK++FEWV+  IE++FL+S+V PGEM+
Sbjct: 1005 QILQEAQENAITLFCCLLRSRLATRRVITEYRLTKQTFEWVLNNIEAQFLRSIVHPGEMV 1064

Query: 377  GCVAA 391
            G +AA
Sbjct: 1065 GVLAA 1069

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>RPB1_SCHPO (P36594) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RNA polymerase II subunit 1)
          Length = 1752

 Score =  132 bits (331), Expect = 3e-31
 Identities = 58/120 (48%), Positives = 90/120 (75%)
 Frame = +2

Query: 32   GDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIE 211
            GD  WP+PVN++R+I NA + F ++ ++P+D+ P +I+  +++L  +L +  G D ++ +
Sbjct: 953  GDARWPLPVNVQRIIQNALQIFHLEAKKPTDLLPSDIINGLNELIAKLTIFRGSDRITRD 1012

Query: 212  AQKNATLFFNILLRSTFASKRVLKEYRLTKESFEWVIGEIESRFLQSLVAPGEMIGCVAA 391
             Q NATL F ILLRS FA KRV+ EYRL K +FEW++GE+E+RF Q++V+PGEM+G +AA
Sbjct: 1013 VQNNATLLFQILLRSKFAVKRVIMEYRLNKVAFEWIMGEVEARFQQAVVSPGEMVGTLAA 1072

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>RPB1_CAEEL (P16356) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1852

 Score =  131 bits (329), Expect = 4e-31
 Identities = 60/125 (48%), Positives = 90/125 (72%)
 Frame = +2

Query: 17   EITTTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDD 196
            +I   GD    +P NL+RLIWNAQK FK+DLR+P ++ P+ ++  + +L ++L +V G+D
Sbjct: 958  KIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVISGVRELSKKLIIVSGND 1017

Query: 197  AMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKESFEWVIGEIESRFLQSLVAPGEMI 376
             +S +AQ NATL  NILLRST  +K +  + +L  E+F+W++GEIESRF Q++  PGEM+
Sbjct: 1018 EISKQAQYNATLLMNILLRSTLCTKNMCTKSKLNSEAFDWLLGEIESRFQQAIAQPGEMV 1077

Query: 377  GCVAA 391
            G +AA
Sbjct: 1078 GALAA 1082

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>RPB1_CAEBR (P35074) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1853

 Score =  130 bits (326), Expect = 1e-30
 Identities = 59/125 (47%), Positives = 90/125 (72%)
 Frame = +2

Query: 17   EITTTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDD 196
            +I   GD    +P NL+RLIWNAQK FK+DLR+P ++ P+ ++  + +L ++L +V G+D
Sbjct: 962  KIFPRGDAKIVLPCNLQRLIWNAQKIFKVDLRKPVNLSPLHVINGVRELSKKLIIVSGND 1021

Query: 197  AMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKESFEWVIGEIESRFLQSLVAPGEMI 376
             +S +AQ NATL  NILLRST  +K++    +L  E+F+W++GEIE+RF Q++  PGEM+
Sbjct: 1022 EISKQAQYNATLLMNILLRSTLCTKKMCTSAKLNTEAFDWLLGEIETRFQQAIAQPGEMV 1081

Query: 377  GCVAA 391
            G +AA
Sbjct: 1082 GALAA 1086

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>RPB1_YEAST (P04050) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RNA polymerase II subunit 1) (B220)
          Length = 1733

 Score =  127 bits (318), Expect = 8e-30
 Identities = 61/125 (48%), Positives = 90/125 (72%)
 Frame = +2

Query: 17   EITTTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDD 196
            E+   G+  WP+PVN++R+I NAQ+TF ID  +PSD+   +IV  +  LQE L V+ G +
Sbjct: 945  EVFVDGEANWPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLVLRGKN 1004

Query: 197  AMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKESFEWVIGEIESRFLQSLVAPGEMI 376
             +   AQ++A   F  LLRS  A++RVL+EYRLTK++F+WV+  IE++FL+S+V PGEM+
Sbjct: 1005 EIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPGEMV 1064

Query: 377  GCVAA 391
            G +AA
Sbjct: 1065 GVLAA 1069

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>RPB1_DROME (P04052) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1887

 Score =  125 bits (313), Expect = 3e-29
 Identities = 57/125 (45%), Positives = 88/125 (70%)
 Frame = +2

Query: 17   EITTTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDD 196
            +I   G++   +P NL+R+IWN QK F I+ R P+D+ P+ +++ +  L ER  +V G+D
Sbjct: 960  QIFPNGESKVVLPCNLQRMIWNVQKIFHINKRLPTDLSPIRVIKGVKTLLERCVIVTGND 1019

Query: 197  AMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKESFEWVIGEIESRFLQSLVAPGEMI 376
             +S +A +NATL F  L+RST  +K V +E+RL+ E+FEW++GEIE+RF Q+   PGEM+
Sbjct: 1020 RISKQANENATLLFQCLIRSTLCTKYVSEEFRLSTEAFEWLVGEIETRFQQAQANPGEMV 1079

Query: 377  GCVAA 391
            G +AA
Sbjct: 1080 GALAA 1084

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>RPB2_TRYBB (P17546) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1766

 Score = 81.3 bits (199), Expect = 5e-16
 Identities = 52/124 (41%), Positives = 76/124 (61%), Gaps = 10/124 (8%)
 Frame = +2

Query: 50   MPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERL-KVVP-----GD----DA 199
            +PVN  RLI NA+ T      + S++ P+ I++ + KLQE L K+ P     GD    + 
Sbjct: 968  LPVNPGRLIQNARSTMG-KRSQVSNLSPITIIDHVRKLQEDLMKLFPSYHRGGDGYIRNT 1026

Query: 200  MSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKESFEWVIGEIESRFLQSLVAPGEMIG 379
            +S E  ++A   FN+ LR   ASKRVLKEY+L   +FE+++ EI +++ QSL  PGE IG
Sbjct: 1027 LSRERIESALTLFNVHLRQLLASKRVLKEYKLNDRAFEYLLKEIRTKYHQSLTTPGENIG 1086

Query: 380  CVAA 391
             +AA
Sbjct: 1087 AIAA 1090

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>RPB1_TRYBB (P17545) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1766

 Score = 81.3 bits (199), Expect = 5e-16
 Identities = 52/124 (41%), Positives = 76/124 (61%), Gaps = 10/124 (8%)
 Frame = +2

Query: 50   MPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERL-KVVP-----GD----DA 199
            +PVN  RLI NA+ T      + S++ P+ I++ + KLQE L K+ P     GD    + 
Sbjct: 968  LPVNPGRLIQNARSTMG-KRSQVSNLSPITIIDHVRKLQEDLMKLFPSYHRGGDGYIRNT 1026

Query: 200  MSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKESFEWVIGEIESRFLQSLVAPGEMIG 379
            +S E  ++A   FN+ LR   ASKRVLKEY+L   +FE+++ EI +++ QSL  PGE IG
Sbjct: 1027 LSRERIESALTLFNVHLRQLLASKRVLKEYKLNDRAFEYLLKEIRTKYHQSLTTPGENIG 1086

Query: 380  CVAA 391
             +AA
Sbjct: 1087 AIAA 1090

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>RPB1_PLAFD (P14248) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 2452

 Score = 65.5 bits (158), Expect = 3e-11
 Identities = 33/103 (32%), Positives = 61/103 (59%), Gaps = 3/103 (2%)
 Frame = +2

Query: 92   TFKIDLRRPSDMHPMEIVEAIDKLQERL---KVVPGDDAMSIEAQKNATLFFNILLRSTF 262
            T K +    S ++P+++V  ++   E+L   K +  +D +S+EAQ NAT+     LR+  
Sbjct: 1308 TLKNNYDENSMLNPIDVVHKVNNFLEKLVIIKQINSNDTLSVEAQNNATILLKAHLRTYL 1367

Query: 263  ASKRVLKEYRLTKESFEWVIGEIESRFLQSLVAPGEMIGCVAA 391
             SK + + ++++ +  +W++ EIE  F +SL  PGE +G +AA
Sbjct: 1368 NSKLLTQTHKVSVKGLDWLLQEIEKIFYKSLCHPGECVGALAA 1410

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>RPB1_ENCCU (Q8SSC4) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
            (RNA polymerase II subunit 1)
          Length = 1599

 Score = 59.3 bits (142), Expect = 2e-09
 Identities = 34/113 (30%), Positives = 59/113 (52%)
 Frame = +2

Query: 53   PVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQKNATL 232
            P N  R++  A++TF +      D+ P  I+EA   L    +++                
Sbjct: 963  PCNFTRILATAKRTFHLST---GDVSPYYILEAHKHLTTSNRIL---------------- 1003

Query: 233  FFNILLRSTFASKRVLKEYRLTKESFEWVIGEIESRFLQSLVAPGEMIGCVAA 391
              N+L+R+  + KRVL E+RL  E+F WV+  I+++ L++ + P EM+G +AA
Sbjct: 1004 --NVLIRTNLSVKRVLLEHRLNTEAFNWVVEVIDAKILKAKITPNEMVGTLAA 1054

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>RPOA2_PYRFU (Q8U0M5) DNA-directed RNA polymerase subunit A'' (EC 2.7.7.6)|
          Length = 397

 Score = 38.1 bits (87), Expect = 0.005
 Identities = 21/63 (33%), Positives = 35/63 (55%)
 Frame = +2

Query: 203 SIEAQKNATLFFNILLRSTFASKRVLKEYRLTKESFEWVIGEIESRFLQSLVAPGEMIGC 382
           S+  +K A L  N+        K+  ++Y+LTK   E +I ++   + ++LV PGE +G 
Sbjct: 9   SLIEKKGANLPENVKSELYEKLKKYNEKYKLTKAEIEAIIDDVVKEYERALVEPGEPVGT 68

Query: 383 VAA 391
           VAA
Sbjct: 69  VAA 71

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>RPOA2_PYRAB (Q9V113) DNA-directed RNA polymerase subunit A'' (EC 2.7.7.6)|
          Length = 397

 Score = 37.0 bits (84), Expect = 0.011
 Identities = 16/37 (43%), Positives = 25/37 (67%)
 Frame = +2

Query: 281 KEYRLTKESFEWVIGEIESRFLQSLVAPGEMIGCVAA 391
           ++Y+LTK   E +I E+   + ++LV PGE +G VAA
Sbjct: 35  EKYKLTKAEVETIIDEVVKEYERALVEPGEAVGTVAA 71

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>RPO1_MIMIV (Q7T6X5) DNA-directed RNA polymerase subunit 1 (EC 2.7.7.6)|
          Length = 1495

 Score = 36.6 bits (83), Expect = 0.015
 Identities = 28/123 (22%), Positives = 56/123 (45%), Gaps = 6/123 (4%)
 Frame = +2

Query: 41   TWPMPVNLKRLIWNAQKTFKIDLRRPSDM-HPMEIVEAIDKL-----QERLKVVPGDDAM 202
            T+ MPV++++ I+N       D+R  + +  P  +++ I  +      + +K       +
Sbjct: 950  TYKMPVDIQQFIFNI---INRDVRNNNVVVDPYYVLKMIKDMYYGSDSKIMKYNNRTSRI 1006

Query: 203  SIEAQKNATLFFNILLRSTFASKRVLKEYRLTKESFEWVIGEIESRFLQSLVAPGEMIGC 382
              E +K       I L    A K+    Y+ +K+ F+ ++   +   + + V  GEM+G 
Sbjct: 1007 KKEDEKRIKFLMKIYLYDVLAPKKCTHVYKFSKQEFDEIVDYFKKTIMLAKVEGGEMVGF 1066

Query: 383  VAA 391
            VAA
Sbjct: 1067 VAA 1069

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>RPOA2_PYRHO (O93777) DNA-directed RNA polymerase subunit A'' (EC 2.7.7.6)|
          Length = 397

 Score = 35.8 bits (81), Expect = 0.025
 Identities = 15/37 (40%), Positives = 25/37 (67%)
 Frame = +2

Query: 281 KEYRLTKESFEWVIGEIESRFLQSLVAPGEMIGCVAA 391
           ++Y+LTK   E +I E+   + ++L+ PGE +G VAA
Sbjct: 35  EKYKLTKVEVETIIDEVIKEYEKALIEPGEAVGTVAA 71

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>RPOA2_THECE (P29158) DNA-directed RNA polymerase subunit A'' (EC 2.7.7.6)|
          Length = 393

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 15/37 (40%), Positives = 23/37 (62%)
 Frame = +2

Query: 281 KEYRLTKESFEWVIGEIESRFLQSLVAPGEMIGCVAA 391
           K+Y+L K   + +I E    + ++L+ PGE IG VAA
Sbjct: 33  KKYKLKKAEVQAIIDETVKEYQKALIEPGEAIGTVAA 69

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>RPOA2_PYRKO (Q5JE34) DNA-directed RNA polymerase subunit A'' (EC 2.7.7.6)|
          Length = 391

 Score = 32.7 bits (73), Expect = 0.22
 Identities = 13/37 (35%), Positives = 24/37 (64%)
 Frame = +2

Query: 281 KEYRLTKESFEWVIGEIESRFLQSLVAPGEMIGCVAA 391
           ++Y+L K+  + +I E    + ++L+ PGE +G VAA
Sbjct: 33  EKYKLKKDEIQAIIDETVREYQKALIEPGEAVGTVAA 69

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>COX1_ORTHI (Q6EGI3) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide I)
          Length = 515

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 224 ATLFFNILLRSTFASKRVLKEYRLTKESFEWVIG 325
           A +    ++   FASKRV+K   LT  + EW+ G
Sbjct: 464 AVILMVFMIWEAFASKRVVKSVSLTSTNLEWIHG 497

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>AGTR1_SHEEP (O77590) Type-1 angiotensin II receptor (AT1)|
          Length = 359

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 156 ISCKKDLRLSLVMMP*ASKLRRTLLYSSISCFVAHLLA 269
           ++C    R   ++ P  S+LRRT+L + ++C +  LLA
Sbjct: 119 LTCLSIDRYLAIVHPMKSRLRRTMLVAKVTCIIIWLLA 156

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>AGTR1_RABIT (P34976) Type-1 angiotensin II receptor (AT1)|
          Length = 359

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 156 ISCKKDLRLSLVMMP*ASKLRRTLLYSSISCFVAHLLA 269
           ++C    R   ++ P  S+LRRT+L + ++C +  LLA
Sbjct: 119 LTCLSIDRYLAIVHPMKSRLRRTMLVAKVTCIIIWLLA 156

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>AGTR1_PIG (P30555) Type-1 angiotensin II receptor (AT1)|
          Length = 359

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 156 ISCKKDLRLSLVMMP*ASKLRRTLLYSSISCFVAHLLA 269
           ++C    R   ++ P  S+LRRT+L + ++C +  LLA
Sbjct: 119 LTCLSIDRYLAIVHPMKSRLRRTMLVAKVTCIIIWLLA 156

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>AGTR1_PANTR (Q9GLN9) Type-1 angiotensin II receptor (AT1)|
          Length = 359

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 156 ISCKKDLRLSLVMMP*ASKLRRTLLYSSISCFVAHLLA 269
           ++C    R   ++ P  S+LRRT+L + ++C +  LLA
Sbjct: 119 LTCLSIDRYLAIVHPMKSRLRRTMLVAKVTCIIIWLLA 156

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>AGTR1_MERUN (O35210) Type-1 angiotensin II receptor (AT1) (GKAT1)|
          Length = 359

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +3

Query: 156 ISCKKDLRLSLVMMP*ASKLRRTLLYSSISCFVAHLLA 269
           ++C    R   ++ P  S+LRRT+L + ++C V  LLA
Sbjct: 119 LTCLSIDRYLAIVHPMKSRLRRTMLVAKVTCVVIWLLA 156

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>AGTR1_HUMAN (P30556) Type-1 angiotensin II receptor (AT1) (AT1AR) (AT1BR)|
          Length = 359

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 156 ISCKKDLRLSLVMMP*ASKLRRTLLYSSISCFVAHLLA 269
           ++C    R   ++ P  S+LRRT+L + ++C +  LLA
Sbjct: 119 LTCLSIDRYLAIVHPMKSRLRRTMLVAKVTCIIIWLLA 156

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>AGTR1_BOVIN (P25104) Type-1 angiotensin II receptor (AT1)|
          Length = 359

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 156 ISCKKDLRLSLVMMP*ASKLRRTLLYSSISCFVAHLLA 269
           ++C    R   ++ P  S+LRRT+L + ++C +  LLA
Sbjct: 119 LTCLSIDRYLAIVHPMKSRLRRTMLVAKVTCIIIWLLA 156

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>RPOA2_AERPE (Q9YAU2) DNA-directed RNA polymerase subunit A'' (EC 2.7.7.6)|
          Length = 410

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +2

Query: 275 VLKEYRLTKESFEWVIGEIESRFLQSLVAPGEMIGCVAA 391
           V KE  L++E    V+ E    +L+SL  PGE +G VAA
Sbjct: 33  VEKEDGLSEEDKISVVKETIRTYLRSLAQPGEAVGTVAA 71

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>COX1_ZYGTR (Q6EGH7) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide I)
          Length = 516

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 224 ATLFFNILLRSTFASKRVLKEYRLTKESFEWVIG 325
           A +    ++    ASKRV+K  +LT  + EW+ G
Sbjct: 464 AVILMVFMIWEALASKRVVKSVQLTSTNLEWIHG 497

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>RPOC_BUCBP (Q89B21) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1404

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = +2

Query: 242  ILLRSTFASKRVLKEYRLTKESFEWVIGEIESRFLQSLVAPGEMI 376
            I++ S     ++L ++R TKES++   G I ++  + LV  GE++
Sbjct: 973  IVITSRNVELKILDKFRRTKESYKVPYGAIIAKMDEELVNSGEIV 1017

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>ACHA_BRARE (Q98880) Acetylcholine receptor protein, alpha subunit precursor|
          Length = 456

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 19  NYHNWRQYMAYACQPQAAYLECSEDF 96
           +Y +W+ ++ YAC P   YL+ +  F
Sbjct: 200 DYRSWKHWVYYACCPDTPYLDITYHF 225

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>AGTRB_RAT (P29089) Type-1B angiotensin II receptor (AT1B) (AT3)|
          Length = 359

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +3

Query: 156 ISCKKDLRLSLVMMP*ASKLRRTLLYSSISCFVAHLLA 269
           ++C    R   ++ P  S+LRRT+L + ++C +  L+A
Sbjct: 119 LTCLSIDRYLAIVHPMKSRLRRTMLVAKVTCIIIWLMA 156

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>AGTRB_MOUSE (P29755) Type-1B angiotensin II receptor (AT1B) (AT3)|
          Length = 359

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +3

Query: 156 ISCKKDLRLSLVMMP*ASKLRRTLLYSSISCFVAHLLA 269
           ++C    R   ++ P  S+LRRT+L + ++C +  L+A
Sbjct: 119 LTCLSIDRYLAIVHPMKSRLRRTMLVAKVTCIIIWLMA 156

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>AGTRA_RAT (P25095) Type-1A angiotensin II receptor (AT1) (AT1A)|
          Length = 359

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +3

Query: 156 ISCKKDLRLSLVMMP*ASKLRRTLLYSSISCFVAHLLA 269
           ++C    R   ++ P  S+LRRT+L + ++C +  L+A
Sbjct: 119 LTCLSIDRYLAIVHPMKSRLRRTMLVAKVTCIIIWLMA 156

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>AGTRA_MOUSE (P29754) Type-1A angiotensin II receptor (AT1) (AT1A)|
          Length = 359

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +3

Query: 156 ISCKKDLRLSLVMMP*ASKLRRTLLYSSISCFVAHLLA 269
           ++C    R   ++ P  S+LRRT+L + ++C +  L+A
Sbjct: 119 LTCLSIDRYLAIVHPMKSRLRRTMLVAKVTCIIIWLMA 156

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>COX1_ORTUN (Q6EGI4) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide I)
          Length = 515

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 224 ATLFFNILLRSTFASKRVLKEYRLTKESFEWVIG 325
           A +    ++   FASKR +K   LT  + EW+ G
Sbjct: 464 AVILMVFMIWEAFASKRTVKSIPLTSTNLEWIHG 497

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>RPOA2_SULSO (P58192) DNA-directed RNA polymerase subunit A'' (EC 2.7.7.6)|
          Length = 392

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 281 KEYRLTKESFEWVIGEIESRFLQSLVAPGEMIGCVAA 391
           KE  +T++  + +       + + L+APGE IG VAA
Sbjct: 36  KEIIVTRDEIDKIFDLAIKEYSEGLIAPGEAIGIVAA 72

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>RPOA2_SULAC (P11514) DNA-directed RNA polymerase subunit A'' (EC 2.7.7.6)|
           (Subunit C)
          Length = 393

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +2

Query: 293 LTKESFEWVIGEIESRFLQSLVAPGEMIGCVAA 391
           LT+E  + +I      + QSL+ PGE IG V A
Sbjct: 41  LTEEDIDRIIDLTIREYQQSLIEPGEAIGVVTA 73

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>ACHA_CHICK (P09479) Acetylcholine receptor protein, alpha subunit precursor|
          Length = 456

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 19  NYHNWRQYMAYACQPQAAYLECSEDF 96
           +Y  W+ ++ YAC P   YL+ +  F
Sbjct: 199 DYRGWKHWVYYACCPDTPYLDITYHF 224

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>AGTR1_CAVPO (Q9WV26) Type-1 angiotensin II receptor (AT1)|
          Length = 359

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +3

Query: 156 ISCKKDLRLSLVMMP*ASKLRRTLLYSSISCFVAHLLA 269
           ++C    R   ++ P  S+LRRT+L + ++C +  L+A
Sbjct: 119 LTCLSIDRYLAIVHPMKSRLRRTMLVAKVTCVIIWLMA 156

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>ZNF35_MOUSE (P15620) Zinc finger protein 35 (Zfp-35)|
          Length = 580

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -1

Query: 391 CSHTSNHFTRSYQRLEESRFNLTNDPFKRFLCKPVFFQ 278
           C+H   HF++S   ++  R +    P+K  +C   F Q
Sbjct: 218 CNHCYKHFSQSSDLIKHQRIHTGEKPYKCDVCGKAFSQ 255

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>ATKA_CAUCR (Q9A7X8) Potassium-transporting ATPase A chain (EC 3.6.3.12)|
           (Potassium-translocating ATPase A chain) (ATP
           phosphohydrolase [potassium-transporting] A chain)
           (Potassium-binding and translocating subunit A)
          Length = 570

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +2

Query: 44  WPMPVNLKRLIWNAQKTFKIDLRRP 118
           WP+ V L R +WN +KTF   + RP
Sbjct: 21  WPLGVFLSR-VWNGEKTFLDPVMRP 44

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>POLG_HCVK3 (Q81495) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3020

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 26   TTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMH 130
            TTG +T   P N  R +W       +++RR  D H
Sbjct: 2071 TTGPSTPCPPPNYTRALWRVAANSYVEVRRVGDFH 2105

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>YL075_MIMIV (Q5UPE8) Hypothetical protein L75|
          Length = 310

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 17/89 (19%), Positives = 40/89 (44%)
 Frame = -1

Query: 337 RFNLTNDPFKRFLCKPVFFQYPLASKCATKQDIEE*SSVLLSFDAHGIITRDNLKSFLQL 158
           + N   +P+     + +  +Y  +       D+ +   +L  ++ + I   DN    +++
Sbjct: 41  KINKLKNPYDFKTIRTIIDEYLFSHLIIDSTDLFD---ILSKYNINTITLSDNFNGDIKM 97

Query: 157 IYRFHNFHWVHVRRSS*VNLESLLSIPDK 71
            Y   N + +HV  +   +++S+  IPDK
Sbjct: 98  FYSLPNLNKIHVGLNY-TDVDSITGIPDK 125

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>COX1_CROLA (P34188) Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c|
           oxidase polypeptide I)
          Length = 516

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 224 ATLFFNILLRSTFASKRVLKEYRLTKESFEWVIG 325
           A + F  +L   FASKR +    LT  + EW+ G
Sbjct: 464 AVIIFLFILWEAFASKRQVMSVELTMTNVEWLHG 497

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>ZN544_HUMAN (Q6NX49) Zinc finger protein 544|
          Length = 715

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -1

Query: 391 CSHTSNHFTRSYQRLEESRFNLTNDPFKRFLCKPVFFQ 278
           C+H    F++SY+ +   R +    PFK   C   F Q
Sbjct: 466 CTHCGKSFSQSYELVTHKRTHTGEKPFKCTQCGKSFSQ 503

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>DGTL1_STRAW (Q82BN0) Deoxyguanosinetriphosphate triphosphohydrolase-like|
           protein
          Length = 450

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
 Frame = +2

Query: 86  QKTFKIDLRR--PSDMHPMEIVEAIDKLQERLKVVPGDDAMSIEAQ--KNAT--LFFNIL 247
           Q  F + + R  P+D  P E+ EA+D+L ++     G D  ++     K+AT  L     
Sbjct: 271 QAVFAVAIGRYVPADTDPAELAEALDRLLDQEWWPHGYDGSAVAQARLKDATSQLIGRFC 330

Query: 248 LRSTFASKRVLKEYRLTKESFEWVI 322
           L +  A++      RLT+ + E V+
Sbjct: 331 LAAEGATRAAYGSGRLTRYAAELVV 355

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>MP44_YLDV (Q9DHR2) Probable metalloendopeptidase G1-type (EC 3.4.24.-)|
          Length = 590

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -2

Query: 207 MLMASSPGTTLSLSCSLSIASTISIGCMSE 118
           ++M  SP  T+ +  SLSI++ ISI C+ E
Sbjct: 209 IIMMPSPFYTVMIKVSLSISNVISIMCLFE 238

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>MENF_ECOLI (P38051) Menaquinone-specific isochorismate synthase (EC 5.4.4.2)|
           (Isochorismate mutase)
          Length = 431

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
 Frame = +2

Query: 11  GTEITTTGDNTWPMPVNLKRLIWNAQKTF------KIDLRRPSDMH 130
           G  +TTT +  WP      +LI  A KT       K+ L R +D+H
Sbjct: 155 GLHLTTTREQHWPDKTGWTQLIELATKTIAEGELDKVVLARATDLH 200


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,333,492
Number of Sequences: 219361
Number of extensions: 950496
Number of successful extensions: 2739
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 2662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2735
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 1380984984
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result