Clone Name	bastl11g02
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D...	490	e-135
2	dbj|AP003905.3| Oryza sativa (japonica cultivar-group) genomic D...	490	e-135
3	ref|XM_493925.1| Oryza sativa (japonica cultivar-group), predic...	474	e-130
4	gb|AC084218.6| Oryza sativa (japonica cultivar-group) chromosome...	474	e-130
5	dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D...	474	e-130
6	gb|AF519538.1| Zea mays RNA polymerase II largest subunit (RPB1)...	466	e-128
7	gb|AF519541.1| Amborella trichopoda RNA polymerase II largest su...	184	1e-43
8	gb|AF519539.1| Magnolia x soulangeana RNA polymerase II largest ...	184	1e-43
9	emb|X52495.1|GMRPB1C Soybean RPB1-C gene for largest subunit of ...	145	1e-31
10	gb|AY490553.1| Ginkgo biloba RNA polymerase II large subunit (rp...	129	7e-27
11	gb|DQ020635.1| Rhododendron macrophyllum RNA polymerase II large...	125	1e-25
12	dbj|AP004460.2| Oryza sativa (japonica cultivar-group) genomic D...	125	1e-25
13	gb|AF519540.1| Nymphaea odorata RNA polymerase II largest subuni...	121	2e-24
14	gb|AF519536.1| Pinus nigra RNA polymerase II largest subunit (RP...	113	4e-22
15	emb|CR932965.2| Medicago truncatula chromosome 5 clone mth2-47e6...	111	2e-21
16	gb|AY490550.1| Thuja occidentalis RNA polymerase II large subuni...	111	2e-21
17	gb|AF519535.1| Cycas revoluta RNA polymerase II largest subunit ...	101	2e-18
18	gb|AF519534.1| Zamia muricata RNA polymerase II largest subunit ...	90	6e-15
19	gb|DQ020643.1| Antirrhinum majus RNA polymerase II largest subun...	84	4e-13
20	gb|AF519537.1| Welwitschia mirabilis RNA polymerase II largest s...	72	1e-09
21	ref|NM_119746.2| Arabidopsis thaliana NRPB1 (RNA POLYMERASE II L...	68	2e-08
22	emb|X52954.1|ATRPII Arabidopsis thaliana rpII gene for RNA polym...	68	2e-08
23	emb|X52494.1|ATRPB1 Arabidopsis thaliana RPB1 gene for the large...	68	2e-08
24	emb|AL161588.2|ATCHRIV84 Arabidopsis thaliana DNA chromosome 4, ...	68	2e-08
25	emb|AL031986.1|ATF4B14 Arabidopsis thaliana DNA chromosome 4, BA...	68	2e-08
26	gb|DQ020644.1| Lycopersicon esculentum RNA polymerase II largest...	66	9e-08
27	gb|AF519542.1| Psilotum nudum RNA polymerase II largest subunit ...	66	9e-08
28	gb|AY490551.1| Taxus canadensis RNA polymerase II large subunit ...	66	9e-08
29	gb|U90210.1|SSU90210 Spirogyra sp. RNA polymerase II largest sub...	66	9e-08
30	gb|AY490552.1| Podocarpus macrophyllus RNA polymerase II large s...	56	9e-05
31	gb|AY305605.1| Podura aquatica clone PaqBpol RNA polymerase II l...	48	0.021
32	gb|AY601776.1|AY601775S2 Caenorhabditis sp. CB5161 RNA polymeras...	46	0.085
33	gb|AY490554.1| Ephedra viridis RNA polymerase II large subunit (...	46	0.085
34	gb|DQ223186.1| Cyanophora paradoxa strain CCAC 0074 DNA-dependen...	44	0.33
35	gb|AC153817.6| Mus musculus BAC RP23-11P24 (Roswell Park Cancer...	44	0.33
36	gb|AC121267.17| Mus musculus chromosome 19, clone RP24-444E1, co...	42	1.3
37	emb|AL161655.8| Human DNA sequence from clone RP11-116E13 on chr...	42	1.3
38	gb|AC112967.14| Mus musculus chromosome 19, clone RP24-151O21, c...	42	1.3
39	gb|AC162372.5| Mus musculus chromosome 19, clone RP23-177G18, co...	42	1.3
40	gb|DQ294584.1| Polychytrium aggregatum isolate AFTOL-ID-24 RNA p...	42	1.3
41	ref|NM_017131.2| Rattus norvegicus calsequestrin 2 (Casq2), mRNA	40	5.2
42	ref|XM_513677.1| PREDICTED: Pan troglodytes similar to Calseques...	40	5.2
43	ref|NM_001232.1| Homo sapiens calsequestrin 2 (cardiac muscle) (...	40	5.2
44	gb|AC145898.4| Pan troglodytes BAC clone RP43-9D19 from 7, compl...	40	5.2
45	emb|AL450389.12| Human DNA sequence from clone RP5-929G5 on chro...	40	5.2
46	ref|XM_501909.1| Yarrowia lipolytica CLIB122, YALI0C16566g predi...	40	5.2
47	emb|AL391005.9| Human DNA sequence from clone RP11-288A5 on chro...	40	5.2
48	emb|X55040.1|OCCALSEQ O.cuniculus mRNA for calsequestrin	40	5.2
49	emb|BX511135.6| Zebrafish DNA sequence from clone CH211-134D21 i...	40	5.2
50	emb|CR392331.15| Zebrafish DNA sequence from clone CH211-9F23 in...	40	5.2
51	emb|CR858976.1| Pongo pygmaeus mRNA; cDNA DKFZp468D075 (from clo...	40	5.2
52	gb|AC159255.3| Mus musculus BAC clone RP24-89C11 from chromosome...	40	5.2
53	gb|U78721.3| Arabidopsis thaliana chromosome 2 clone T1B8 map TE...	40	5.2
54	gb|AC002341.3| Arabidopsis thaliana chromosome 2 clone T14G11 ma...	40	5.2
55	ref|XM_704633.1| PREDICTED: Danio rerio POLR2A protein, transcri...	40	5.2
56	ref|XM_704631.1| PREDICTED: Danio rerio POLR2A protein, transcri...	40	5.2
57	ref|XM_704636.1| PREDICTED: Danio rerio POLR2A protein, transcri...	40	5.2
58	ref|XM_704635.1| PREDICTED: Danio rerio POLR2A protein, transcri...	40	5.2
59	ref|XM_704632.1| PREDICTED: Danio rerio POLR2A protein, transcri...	40	5.2
60	ref|XM_704640.1| PREDICTED: Danio rerio POLR2A protein, transcri...	40	5.2
61	ref|XM_704638.1| PREDICTED: Danio rerio POLR2A protein, transcri...	40	5.2
62	ref|XM_704642.1| PREDICTED: Danio rerio POLR2A protein, transcri...	40	5.2
63	ref|XM_704641.1| PREDICTED: Danio rerio POLR2A protein, transcri...	40	5.2
64	ref|XM_704637.1| PREDICTED: Danio rerio POLR2A protein, transcri...	40	5.2
65	ref|XM_704634.1| PREDICTED: Danio rerio POLR2A protein, transcri...	40	5.2
66	ref|XM_704639.1| PREDICTED: Danio rerio POLR2A protein, transcri...	40	5.2
67	ref|XM_677590.1| PREDICTED: Danio rerio POLR2A protein, transcri...	40	5.2
68	ref|XM_703295.1| PREDICTED: Danio rerio similar to DNA-directed ...	40	5.2
69	ref|XM_703294.1| PREDICTED: Danio rerio similar to DNA-directed ...	40	5.2
70	ref|XM_703293.1| PREDICTED: Danio rerio similar to DNA-directed ...	40	5.2
71	ref|XM_703292.1| PREDICTED: Danio rerio similar to DNA-directed ...	40	5.2
72	ref|XM_703291.1| PREDICTED: Danio rerio similar to DNA-directed ...	40	5.2
73	ref|XM_703290.1| PREDICTED: Danio rerio similar to DNA-directed ...	40	5.2
74	ref|XM_703289.1| PREDICTED: Danio rerio similar to DNA-directed ...	40	5.2
75	ref|XM_703288.1| PREDICTED: Danio rerio similar to DNA-directed ...	40	5.2
76	ref|XM_703287.1| PREDICTED: Danio rerio similar to DNA-directed ...	40	5.2
77	ref|XM_703286.1| PREDICTED: Danio rerio similar to DNA-directed ...	40	5.2
78	ref|XM_703285.1| PREDICTED: Danio rerio similar to DNA-directed ...	40	5.2
79	ref|XM_703284.1| PREDICTED: Danio rerio similar to DNA-directed ...	40	5.2
80	ref|XM_703283.1| PREDICTED: Danio rerio similar to DNA-directed ...	40	5.2
81	ref|XM_703282.1| PREDICTED: Danio rerio similar to DNA-directed ...	40	5.2
82	ref|XM_681282.1| PREDICTED: Danio rerio similar to DNA-directed ...	40	5.2
83	emb|BX005475.19| Zebrafish DNA sequence from clone CH211-165I18 ...	40	5.2
84	gb|BC022288.1| Homo sapiens calsequestrin 2 (cardiac muscle), mR...	40	5.2
85	dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...	40	5.2
86	dbj|AP002746.2| Oryza sativa (japonica cultivar-group) genomic D...	40	5.2
87	gb|BC092229.1| Mus musculus calsequestrin 2, mRNA (cDNA clone MG...	40	5.2
88	dbj|AK129891.1| Homo sapiens cDNA FLJ26381 fis, clone HRT06737, ...	40	5.2
89	dbj|AK129831.1| Homo sapiens cDNA FLJ26321 fis, clone HRT00385, ...	40	5.2
90	gb|AF001334.1|AF001334 Rattus norvegicus cardiac calsequestrin g...	40	5.2
91	emb|BX855614.13| Zebrafish DNA sequence from clone DKEY-262G12 i...	40	5.2
92	emb|CT571245.12| Mouse DNA sequence from clone RP23-2N7 on chrom...	40	5.2
93	gb|U91483.1|MMU91483 Mus musculus cardiac calsequestrin mRNA, co...	40	5.2
94	gb|AF068244.1|AF068244 Mus musculus cardiac calsequestrin mRNA, ...	40	5.2
95	ref|NM_009814.1| Mus musculus calsequestrin 2 (Casq2), mRNA	40	5.2
96	gb|BC072547.1| Rattus norvegicus calsequestrin 2, mRNA (cDNA clo...	40	5.2
97	emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB1...	40	5.2
98	emb|AL929346.5| Zebrafish DNA sequence from clone DKEY-38P12, co...	40	5.2
99	emb|AL929106.5| Mouse DNA sequence from clone RP23-446N16 on chr...	40	5.2
100	gb|U33287.1|RNU33287 Rattus norvegicus calsequestrin mRNA, compl...	40	5.2
101	emb|AL606529.9| Human DNA sequence from clone RP4-744B2 on chrom...	40	5.2
102	dbj|D55655.1| Homo sapiens mRNA for cardiac calsequestrin, compl...	40	5.2

---

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  490 bits (247), Expect = e-135
 Identities = 352/387 (90%)
 Strand = Plus / Minus

                                                                           
Query: 5       cagcttgggactgaaattaccacaactggcgacaatacatggcctatgcctgtcaacctc 64
               ||||||||  |||| ||| |||||||||| || |||||||||||||||||||||||||||
Sbjct: 3222532 cagcttggttctgagattgccacaactggtgataatacatggcctatgcctgtcaacctc 3222473

                                                                           
Query: 65      aagcggcttatctggaatgctcagaagactttcaagattgacttaagaagaccttctgac 124
               || ||||||||||||||||| |||||||| |||||||||||  | ||||| |||||||||
Sbjct: 3222472 aaacggcttatctggaatgcacagaagacattcaagattgatctcagaaggccttctgac 3222413

                                                                           
Query: 125     atgcacccaatggaaattgtggaagcgatagataagctgcaagaaagacttaaggttgtc 184
               ||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| 
Sbjct: 3222412 atgcacccaatggaaattgtggaggcaatagataagctgcaagaaagactgaaggttgtt 3222353

                                                                           
Query: 185     cctggtgatgatgccatgagcatcgaagctcagaagaacgctactttattcttcaatatc 244
               |||||||||||||| ||||| || || ||||||||||| || ||||| ||||||||||||
Sbjct: 3222352 cctggtgatgatgctatgagtattgaggctcagaagaatgcaactttgttcttcaatatc 3222293

                                                                           
Query: 245     ctgcttcgtagcacatttgctagcaagagggtattgaaagaatacaggcttacaaaggaa 304
               |||||||| |||||||| |||||||||||||| ||||| || ||||||||||||||||||
Sbjct: 3222292 ctgcttcgaagcacattcgctagcaagagggtcttgaaggagtacaggcttacaaaggaa 3222233

                                                                           
Query: 305     tcttttgaatgggtcattggtgagattgaatcgagattcctccagtctttggtagctcct 364
                ||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 3222232 gcttttgaatgggttattggtgagattgaatcgagattccttcagtctttggtggctcct 3222173

                                          
Query: 365     ggtgaaatgattggatgtgtggctgca 391
               ||||||||||||||||| || ||||||
Sbjct: 3222172 ggtgaaatgattggatgcgtagctgca 3222146

---

>dbj|AP003905.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1177_E11
          Length = 92375

 Score =  490 bits (247), Expect = e-135
 Identities = 352/387 (90%)
 Strand = Plus / Minus

                                                                         
Query: 5     cagcttgggactgaaattaccacaactggcgacaatacatggcctatgcctgtcaacctc 64
             ||||||||  |||| ||| |||||||||| || |||||||||||||||||||||||||||
Sbjct: 78612 cagcttggttctgagattgccacaactggtgataatacatggcctatgcctgtcaacctc 78553

                                                                         
Query: 65    aagcggcttatctggaatgctcagaagactttcaagattgacttaagaagaccttctgac 124
             || ||||||||||||||||| |||||||| |||||||||||  | ||||| |||||||||
Sbjct: 78552 aaacggcttatctggaatgcacagaagacattcaagattgatctcagaaggccttctgac 78493

                                                                         
Query: 125   atgcacccaatggaaattgtggaagcgatagataagctgcaagaaagacttaaggttgtc 184
             ||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| 
Sbjct: 78492 atgcacccaatggaaattgtggaggcaatagataagctgcaagaaagactgaaggttgtt 78433

                                                                         
Query: 185   cctggtgatgatgccatgagcatcgaagctcagaagaacgctactttattcttcaatatc 244
             |||||||||||||| ||||| || || ||||||||||| || ||||| ||||||||||||
Sbjct: 78432 cctggtgatgatgctatgagtattgaggctcagaagaatgcaactttgttcttcaatatc 78373

                                                                         
Query: 245   ctgcttcgtagcacatttgctagcaagagggtattgaaagaatacaggcttacaaaggaa 304
             |||||||| |||||||| |||||||||||||| ||||| || ||||||||||||||||||
Sbjct: 78372 ctgcttcgaagcacattcgctagcaagagggtcttgaaggagtacaggcttacaaaggaa 78313

                                                                         
Query: 305   tcttttgaatgggtcattggtgagattgaatcgagattcctccagtctttggtagctcct 364
              ||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 78312 gcttttgaatgggttattggtgagattgaatcgagattccttcagtctttggtggctcct 78253

                                        
Query: 365   ggtgaaatgattggatgtgtggctgca 391
             ||||||||||||||||| || ||||||
Sbjct: 78252 ggtgaaatgattggatgcgtagctgca 78226

---

>ref|XM_493925.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 5226

 Score =  474 bits (239), Expect = e-130
 Identities = 350/387 (90%)
 Strand = Plus / Plus

                                                                        
Query: 5    cagcttgggactgaaattaccacaactggcgacaatacatggcctatgcctgtcaacctc 64
            |||||||| ||||| ||| | |||||||| || ||||||||||||||||||||||| |||
Sbjct: 2722 cagcttggcactgagattgctacaactggtgataatacatggcctatgcctgtcaatctc 2781

                                                                        
Query: 65   aagcggcttatctggaatgctcagaagactttcaagattgacttaagaagaccttctgac 124
            ||||||||||||||||||||||||||||| |||||||||||  | ||||| |||||||||
Sbjct: 2782 aagcggcttatctggaatgctcagaagacattcaagattgatctgagaaggccttctgac 2841

                                                                        
Query: 125  atgcacccaatggaaattgtggaagcgatagataagctgcaagaaagacttaaggttgtc 184
            ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 2842 atgcacccaatggaaattgtggatgcaatagataagctgcaagaaagacttaaggttgtc 2901

                                                                        
Query: 185  cctggtgatgatgccatgagcatcgaagctcagaagaacgctactttattcttcaatatc 244
            |||||||| ||||  || || || || ||||||||||| || ||||| ||||||||||||
Sbjct: 2902 cctggtgacgatgatatcagtattgaggctcagaagaatgcaactttgttcttcaatatc 2961

                                                                        
Query: 245  ctgcttcgtagcacatttgctagcaagagggtattgaaagaatacaggcttacaaaggaa 304
            |||||||| ||||||||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct: 2962 ctgcttcgaagcacatttgctagcaagagggtcttgaaggagtacaggcttacaaaggaa 3021

                                                                        
Query: 305  tcttttgaatgggtcattggtgagattgaatcgagattcctccagtctttggtagctcct 364
             ||||||||||||| |||||||||||||||||||||||||| || ||||| || ||||| 
Sbjct: 3022 gcttttgaatgggttattggtgagattgaatcgagattccttcaatctttagtggctcca 3081

                                       
Query: 365  ggtgaaatgattggatgtgtggctgca 391
            ||||||||||| |||||||| ||||||
Sbjct: 3082 ggtgaaatgatcggatgtgtagctgca 3108

---

>gb|AC084218.6| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0001A07,
             complete sequence
          Length = 164898

 Score =  474 bits (239), Expect = e-130
 Identities = 350/387 (90%)
 Strand = Plus / Minus

                                                                         
Query: 5     cagcttgggactgaaattaccacaactggcgacaatacatggcctatgcctgtcaacctc 64
             |||||||| ||||| ||| | |||||||| || ||||||||||||||||||||||| |||
Sbjct: 73561 cagcttggcactgagattgctacaactggtgataatacatggcctatgcctgtcaatctc 73502

                                                                         
Query: 65    aagcggcttatctggaatgctcagaagactttcaagattgacttaagaagaccttctgac 124
             ||||||||||||||||||||||||||||| |||||||||||  | ||||| |||||||||
Sbjct: 73501 aagcggcttatctggaatgctcagaagacattcaagattgatctgagaaggccttctgac 73442

                                                                         
Query: 125   atgcacccaatggaaattgtggaagcgatagataagctgcaagaaagacttaaggttgtc 184
             ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 73441 atgcacccaatggaaattgtggatgcaatagataagctgcaagaaagacttaaggttgtc 73382

                                                                         
Query: 185   cctggtgatgatgccatgagcatcgaagctcagaagaacgctactttattcttcaatatc 244
             |||||||| ||||  || || || || ||||||||||| || ||||| ||||||||||||
Sbjct: 73381 cctggtgacgatgatatcagtattgaggctcagaagaatgcaactttgttcttcaatatc 73322

                                                                         
Query: 245   ctgcttcgtagcacatttgctagcaagagggtattgaaagaatacaggcttacaaaggaa 304
             |||||||| ||||||||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct: 73321 ctgcttcgaagcacatttgctagcaagagggtcttgaaggagtacaggcttacaaaggaa 73262

                                                                         
Query: 305   tcttttgaatgggtcattggtgagattgaatcgagattcctccagtctttggtagctcct 364
              ||||||||||||| |||||||||||||||||||||||||| || ||||| || ||||| 
Sbjct: 73261 gcttttgaatgggttattggtgagattgaatcgagattccttcaatctttagtggctcca 73202

                                        
Query: 365   ggtgaaatgattggatgtgtggctgca 391
             ||||||||||| |||||||| ||||||
Sbjct: 73201 ggtgaaatgatcggatgtgtagctgca 73175

---

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  474 bits (239), Expect = e-130
 Identities = 350/387 (90%)
 Strand = Plus / Minus

                                                                           
Query: 5       cagcttgggactgaaattaccacaactggcgacaatacatggcctatgcctgtcaacctc 64
               |||||||| ||||| ||| | |||||||| || ||||||||||||||||||||||| |||
Sbjct: 2878950 cagcttggcactgagattgctacaactggtgataatacatggcctatgcctgtcaatctc 2878891

                                                                           
Query: 65      aagcggcttatctggaatgctcagaagactttcaagattgacttaagaagaccttctgac 124
               ||||||||||||||||||||||||||||| |||||||||||  | ||||| |||||||||
Sbjct: 2878890 aagcggcttatctggaatgctcagaagacattcaagattgatctgagaaggccttctgac 2878831

                                                                           
Query: 125     atgcacccaatggaaattgtggaagcgatagataagctgcaagaaagacttaaggttgtc 184
               ||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 2878830 atgcacccaatggaaattgtggatgcaatagataagctgcaagaaagacttaaggttgtc 2878771

                                                                           
Query: 185     cctggtgatgatgccatgagcatcgaagctcagaagaacgctactttattcttcaatatc 244
               |||||||| ||||  || || || || ||||||||||| || ||||| ||||||||||||
Sbjct: 2878770 cctggtgacgatgatatcagtattgaggctcagaagaatgcaactttgttcttcaatatc 2878711

                                                                           
Query: 245     ctgcttcgtagcacatttgctagcaagagggtattgaaagaatacaggcttacaaaggaa 304
               |||||||| ||||||||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct: 2878710 ctgcttcgaagcacatttgctagcaagagggtcttgaaggagtacaggcttacaaaggaa 2878651

                                                                           
Query: 305     tcttttgaatgggtcattggtgagattgaatcgagattcctccagtctttggtagctcct 364
                ||||||||||||| |||||||||||||||||||||||||| || ||||| || ||||| 
Sbjct: 2878650 gcttttgaatgggttattggtgagattgaatcgagattccttcaatctttagtggctcca 2878591

                                          
Query: 365     ggtgaaatgattggatgtgtggctgca 391
               ||||||||||| |||||||| ||||||
Sbjct: 2878590 ggtgaaatgatcggatgtgtagctgca 2878564

---

>gb|AF519538.1| Zea mays RNA polymerase II largest subunit (RPB1) mRNA, partial cds
          Length = 3027

 Score =  466 bits (235), Expect = e-128
 Identities = 349/387 (90%)
 Strand = Plus / Plus

                                                                        
Query: 5    cagcttgggactgaaattaccacaactggcgacaatacatggcctatgcctgtcaacctc 64
            ||||||||| |||| || ||||||||||| |||||| | |||||||||||||| ||||||
Sbjct: 2632 cagcttgggtctgagatcaccacaactggtgacaattcgtggcctatgcctgtgaacctc 2691

                                                                        
Query: 65   aagcggcttatctggaatgctcagaagactttcaagattgacttaagaagaccttctgac 124
            ||||| || |||||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct: 2692 aagcgactcatctggaatgctcagaagacattcaagattgattttagaagaccttctgac 2751

                                                                        
Query: 125  atgcacccaatggaaattgtggaagcgatagataagctgcaagaaagacttaaggttgtc 184
            |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||| 
Sbjct: 2752 atgcacccgatggaaattgtggaagcgatagataaactgcaagaaagacttaaggttgta 2811

                                                                        
Query: 185  cctggtgatgatgccatgagcatcgaagctcagaagaacgctactttattcttcaatatc 244
            |||||||||||||| |||||||| || || |||||||| || || || ||||| ||||||
Sbjct: 2812 cctggtgatgatgctatgagcattgaggcccagaagaatgcaaccttgttctttaatatc 2871

                                                                        
Query: 245  ctgcttcgtagcacatttgctagcaagagggtattgaaagaatacaggcttacaaaggaa 304
            || ||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 2872 ctacttcgtagcacgtttgctagcaagagggtcttgaaggaatacaggcttacaaaggaa 2931

                                                                        
Query: 305  tcttttgaatgggtcattggtgagattgaatcgagattcctccagtctttggtagctcct 364
             ||||||||||||| ||||||||||||||||| || || || ||||||||||| || |||
Sbjct: 2932 gcttttgaatgggttattggtgagattgaatccaggtttcttcagtctttggtggcccct 2991

                                       
Query: 365  ggtgaaatgattggatgtgtggctgca 391
            || || |||||||||||||||||||||
Sbjct: 2992 ggcgagatgattggatgtgtggctgca 3018

---

>gb|AF519541.1| Amborella trichopoda RNA polymerase II largest subunit (RPB1) mRNA,
            partial cds
          Length = 3039

 Score =  184 bits (93), Expect = 1e-43
 Identities = 279/341 (81%)
 Strand = Plus / Plus

                                                                        
Query: 44   tggcctatgcctgtcaacctcaagcggcttatctggaatgctcagaagactttcaagatt 103
            ||||| |||||||| || |||||| |||| || |||||||||||||| |  || ||| ||
Sbjct: 2683 tggcccatgcctgtgaatctcaagaggctgatttggaatgctcagaaaatgtttaaggtt 2742

                                                                        
Query: 104  gacttaagaagaccttctgacatgcacccaatggaaattgtggaagcgatagataagctg 163
            || ||||||||||||||||| |||||||||||||| |||||||||||  | |||||||| 
Sbjct: 2743 gatttaagaagaccttctgatatgcacccaatggagattgtggaagcagttgataagctt 2802

                                                                        
Query: 164  caagaaagacttaaggttgtccctggtgatgatgccatgagcatcgaagctcagaagaac 223
            || ||||||||||| ||||| || ||||||||    ||||| || || ||||| ||||| 
Sbjct: 2803 caggaaagacttaaagttgttccaggtgatgacctgatgagtatagaggctcaaaagaat 2862

                                                                        
Query: 224  gctactttattcttcaatatcctgcttcgtagcacatttgctagcaagagggtattgaaa 283
            |||||  | || ||||| || || |||||||| || |||||||||||| | |||||||||
Sbjct: 2863 gctacactctttttcaacatactccttcgtagtacttttgctagcaagcgtgtattgaaa 2922

                                                                        
Query: 284  gaatacaggcttacaaaggaatcttttgaatgggtcattggtgagattgaatcgagattc 343
            ||||| ||||| ||    ||| ||||||| ||||| ||||||||||| || || ||||||
Sbjct: 2923 gaatataggctcactcgtgaagcttttgattgggttattggtgagatagagtctagattc 2982

                                                     
Query: 344  ctccagtctttggtagctcctggtgaaatgattggatgtgt 384
             | |||||| |||| || || ||||| |||||||| |||||
Sbjct: 2983 ttgcagtctctggtggcaccaggtgagatgattggttgtgt 3023

---

>gb|AF519539.1| Magnolia x soulangeana RNA polymerase II largest subunit (RPB1) mRNA,
            partial cds
          Length = 3030

 Score =  184 bits (93), Expect = 1e-43
 Identities = 285/349 (81%)
 Strand = Plus / Plus

                                                                        
Query: 42   catggcctatgcctgtcaacctcaagcggcttatctggaatgctcagaagactttcaaga 101
            |||||||||||||||| ||||||||| ||||||||||||||||||| ||||| || ||| 
Sbjct: 2672 catggcctatgcctgttaacctcaagaggcttatctggaatgctcaaaagacatttaagg 2731

                                                                        
Query: 102  ttgacttaagaagaccttctgacatgcacccaatggaaattgtggaagcgatagataagc 161
            ||||||| ||||| || |||||||||||||| ||||| ||||| |||||  | || ||||
Sbjct: 2732 ttgacttgagaaggccatctgacatgcaccctatggagattgttgaagcagttgacaagc 2791

                                                                        
Query: 162  tgcaagaaagacttaaggttgtccctggtgatgatgccatgagcatcgaagctcagaaga 221
            | || |||||  | || || || || |||||||||    ||||||| ||||||||||| |
Sbjct: 2792 ttcaggaaaggttgaaagtcgttccaggtgatgattttctgagcatggaagctcagaaaa 2851

                                                                        
Query: 222  acgctactttattcttcaatatcctgcttcgtagcacatttgctagcaagagggtattga 281
            | || ||  | |||||||| || |||||||||||||||||||| || ||| | || ||||
Sbjct: 2852 atgcaacccttttcttcaacattctgcttcgtagcacatttgccagtaagcgtgtgttga 2911

                                                                        
Query: 282  aagaatacaggcttacaaaggaatcttttgaatgggtcattggtgagattgaatcgagat 341
            |||| |||||||| ||    ||| | ||||||||||| || |||||||| |||||  |||
Sbjct: 2912 aagagtacaggctaactcgtgaagcatttgaatgggtaatcggtgagatagaatctcgat 2971

                                                             
Query: 342  tcctccagtctttggtagctcctggtgaaatgattggatgtgtggctgc 390
            || | || || ||||| || || |||||||||||||| |||||||||||
Sbjct: 2972 tcttacaatcattggttgcaccaggtgaaatgattggctgtgtggctgc 3020

---

>emb|X52495.1|GMRPB1C Soybean RPB1-C gene for largest subunit of RNA polymerase II
          Length = 4153

 Score =  145 bits (73), Expect = 1e-31
 Identities = 202/245 (82%)
 Strand = Plus / Plus

                                                                       
Query: 51  tgcctgtcaacctcaagcggcttatctggaatgctcagaagactttcaagattgacttaa 110
           ||||||| ||||||||| ||||||||||||||||||||||||| || ||| |||||||  
Sbjct: 500 tgcctgttaacctcaagaggcttatctggaatgctcagaagacatttaaggttgacttcc 559

                                                                       
Query: 111 gaagaccttctgacatgcacccaatggaaattgtggaagcgatagataagctgcaagaaa 170
           |||| |||||||| ||||| |||||||||||||||||||| || |||||||| || ||  
Sbjct: 560 gaaggccttctgatatgcatccaatggaaattgtggaagccatcgataagctccaggagc 619

                                                                       
Query: 171 gacttaaggttgtccctggtgatgatgccatgagcatcgaagctcagaagaacgctactt 230
           | ||||||||||| || || || || ||| ||||    |||||||| ||||| |||||| 
Sbjct: 620 ggcttaaggttgttcccggcgaggacgccttgagtcaagaagctcaaaagaatgctactc 679

                                                                       
Query: 231 tattcttcaatatcctgcttcgtagcacatttgctagcaagagggtattgaaagaataca 290
           |  |||||||||| ||||| || ||||| || || || || ||||| ||| | |||||||
Sbjct: 680 tcctcttcaatattctgctccgcagcactttcgccagtaaaagggtcttggaggaataca 739

                
Query: 291 ggctt 295
           |||||
Sbjct: 740 ggctt 744

---

>gb|AY490553.1| Ginkgo biloba RNA polymerase II large subunit (rpb1) mRNA, partial
            cds
          Length = 3039

 Score =  129 bits (65), Expect = 7e-27
 Identities = 272/341 (79%)
 Strand = Plus / Plus

                                                                        
Query: 44   tggcctatgcctgtcaacctcaagcggcttatctggaatgctcagaagactttcaagatt 103
            |||||||||||||| || || ||| |||| || |||||||| |||||||| ||||| |||
Sbjct: 2683 tggcctatgcctgtaaatctgaagaggctaatatggaatgcccagaagacattcaaaatt 2742

                                                                        
Query: 104  gacttaagaagaccttctgacatgcacccaatggaaattgtggaagcgatagataagctg 163
            ||||| || | ||| || || ||||| || ||||| |||||||||||  | || ||||| 
Sbjct: 2743 gacttgaggaaaccgtcggatatgcatcccatggagattgtggaagctgttgacaagctt 2802

                                                                        
Query: 164  caagaaagacttaaggttgtccctggtgatgatgccatgagcatcgaagctcagaagaac 223
            || ||||| ||||||||||| |||||||||||    ||||| || || |||||||| || 
Sbjct: 2803 caggaaaggcttaaggttgttcctggtgatgaccttatgagtattgaggctcagaaaaat 2862

                                                                        
Query: 224  gctactttattcttcaatatcctgcttcgtagcacatttgctagcaagagggtattgaaa 283
            |||||| | || ||||| || || || || || |||||||| |||||  | ||  |||| 
Sbjct: 2863 gctactctttttttcaacatactactccgcagtacatttgccagcaaacgtgtgctgaag 2922

                                                                        
Query: 284  gaatacaggcttacaaaggaatcttttgaatgggtcattggtgagattgaatcgagattc 343
            |||||||| || || |  ||| ||||||||||||| |||||||||||||| ||  | |||
Sbjct: 2923 gaatacagactaactagagaagcttttgaatgggtgattggtgagattgagtctcgtttc 2982

                                                     
Query: 344  ctccagtctttggtagctcctggtgaaatgattggatgtgt 384
            || |||||||| || || || ||||| |||||||| |||||
Sbjct: 2983 ctgcagtctttagtggcaccaggtgagatgattggttgtgt 3023

---

>gb|DQ020635.1| Rhododendron macrophyllum RNA polymerase II largest subunit (RPB1)
            gene, exons 8 through 11 and partial cds
          Length = 2072

 Score =  125 bits (63), Expect = 1e-25
 Identities = 162/195 (83%)
 Strand = Plus / Plus

                                                                        
Query: 2    ttgcagcttgggactgaaattaccacaactggcgacaatacatggcctatgcctgtcaac 61
            |||||||| || || |||||| | || ||||| || ||||  ||||| |||||||| || 
Sbjct: 1707 ttgcagctgggaacagaaattgcaactactggtgataataattggccaatgcctgtgaat 1766

                                                                        
Query: 62   ctcaagcggcttatctggaatgctcagaagactttcaagattgacttaagaagaccttct 121
            ||   ||||||||| |||||||| |||||||| || ||||||||| ||||| ||||||||
Sbjct: 1767 ctagggcggcttatttggaatgcacagaagacgtttaagattgacctaagacgaccttct 1826

                                                                        
Query: 122  gacatgcacccaatggaaattgtggaagcgatagataagctgcaagaaagacttaaggtt 181
            || |||||||||||||| |||||||||||  | |||||||| || |||||  | ||||||
Sbjct: 1827 gatatgcacccaatggagattgtggaagctgttgataagcttcaggaaaggttgaaggtt 1886

                           
Query: 182  gtccctggtgatgat 196
            || ||||||||||||
Sbjct: 1887 gtgcctggtgatgat 1901

---

>dbj|AP004460.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
           PAC clone:P0438H08
          Length = 148626

 Score =  125 bits (63), Expect = 1e-25
 Identities = 90/99 (90%)
 Strand = Plus / Minus

                                                                       
Query: 5   cagcttgggactgaaattaccacaactggcgacaatacatggcctatgcctgtcaacctc 64
           ||||||||  |||| ||| |||||||||| || |||||||||||||||||||||||||||
Sbjct: 99  cagcttggttctgagattgccacaactggtgataatacatggcctatgcctgtcaacctc 40

                                                  
Query: 65  aagcggcttatctggaatgctcagaagactttcaagatt 103
           || ||||||||||||||||| |||||||| |||||||||
Sbjct: 39  aaacggcttatctggaatgcacagaagacattcaagatt 1

---

>gb|AF519540.1| Nymphaea odorata RNA polymerase II largest subunit (RPB1) mRNA,
            partial cds
          Length = 3039

 Score =  121 bits (61), Expect = 2e-24
 Identities = 244/305 (80%)
 Strand = Plus / Plus

                                                                        
Query: 29   actggcgacaatacatggcctatgcctgtcaacctcaagcggcttatctggaatgctcag 88
            ||||| |||||| ||||||| ||||| || || |||||  |||||||||||||||| || 
Sbjct: 2668 actggggacaattcatggccaatgccggtgaatctcaaaaggcttatctggaatgcacaa 2727

                                                                        
Query: 89   aagactttcaagattgacttaagaagaccttctgacatgcacccaatggaaattgtggaa 148
            ||||| || ||| ||||| | |||||||| ||||| |||||||| ||||| || ||||||
Sbjct: 2728 aagacgtttaaggttgacctgagaagaccatctgatatgcaccctatggagatagtggaa 2787

                                                                        
Query: 149  gcgatagataagctgcaagaaagacttaaggttgtccctggtgatgatgccatgagcatc 208
            ||  | || || || || ||||| || || ||||| |||||||| ||||| ||||| || 
Sbjct: 2788 gctgttgacaaacttcaggaaaggctgaaagttgtacctggtgaggatgcaatgagtatg 2847

                                                                        
Query: 209  gaagctcagaagaacgctactttattcttcaatatcctgcttcgtagcacatttgctagc 268
            || ||||| ||||| |||||  | || |||||||| || ||| | ||||||||||| |||
Sbjct: 2848 gaggctcaaaagaatgctaccctttttttcaatatactccttagaagcacatttgcaagc 2907

                                                                        
Query: 269  aagagggtattgaaagaatacaggcttacaaaggaatcttttgaatgggtcattggtgag 328
            ||| | || |  ||||| || |||||||||   ||| | ||||| ||||| |||||||||
Sbjct: 2908 aagcgtgtgtcaaaagagtataggcttacacgtgaagcatttgactgggtgattggtgag 2967

                 
Query: 329  attga 333
            |||||
Sbjct: 2968 attga 2972

---

>gb|AF519536.1| Pinus nigra RNA polymerase II largest subunit (RPB1) mRNA, partial
            cds
          Length = 3039

 Score =  113 bits (57), Expect = 4e-22
 Identities = 270/341 (79%)
 Strand = Plus / Plus

                                                                        
Query: 44   tggcctatgcctgtcaacctcaagcggcttatctggaatgctcagaagactttcaagatt 103
            |||||| ||||||| ||||| ||| ||||||| ||||||   |||||||| ||||| |||
Sbjct: 2683 tggcctctgcctgtaaaccttaagaggcttatatggaatagccagaagaccttcaaaatt 2742

                                                                        
Query: 104  gacttaagaagaccttctgacatgcacccaatggaaattgtggaagcgatagataagctg 163
            ||    |||||||| || |||||||| || ||||| ||||| ||||| || || |   ||
Sbjct: 2743 gatgcgagaagaccctcagacatgcatcccatggagattgtagaagcaattgacagattg 2802

                                                                        
Query: 164  caagaaagacttaaggttgtccctggtgatgatgccatgagcatcgaagctcagaagaac 223
            || ||||||||||||||||| |||||||||||   |||||| || || || ||||| || 
Sbjct: 2803 caggaaagacttaaggttgttcctggtgatgacctcatgagtattgaggcacagaaaaat 2862

                                                                        
Query: 224  gctactttattcttcaatatcctgcttcgtagcacatttgctagcaagagggtattgaaa 283
            || ||| | || ||||||||  ||||||| || ||||||||||| ||  | ||| |||| 
Sbjct: 2863 gccactctctttttcaatattttgcttcgaagtacatttgctagtaaacgtgtactgaag 2922

                                                                        
Query: 284  gaatacaggcttacaaaggaatcttttgaatgggtcattggtgagattgaatcgagattc 343
            || |||   || ||||  ||| | |||||||||||  ||||||||||||||||  | |||
Sbjct: 2923 gagtaccacctcacaagagaagcatttgaatgggtagttggtgagattgaatctcgtttc 2982

                                                     
Query: 344  ctccagtctttggtagctcctggtgaaatgattggatgtgt 384
            || ||||| || |||||||| ||||| |||||||| |||||
Sbjct: 2983 ctgcagtccttagtagctccaggtgagatgattggctgtgt 3023

---

>emb|CR932965.2| Medicago truncatula chromosome 5 clone mth2-47e6, COMPLETE SEQUENCE
          Length = 96647

 Score =  111 bits (56), Expect = 2e-21
 Identities = 107/124 (86%)
 Strand = Plus / Minus

                                                                         
Query: 53    cctgtcaacctcaagcggcttatctggaatgctcagaagactttcaagattgacttaaga 112
             ||||||||||| ||  |||||||||||||||| |||||||| || ||| |||||||  ||
Sbjct: 16735 cctgtcaaccttaaaaggcttatctggaatgcgcagaagacctttaaggttgacttccga 16676

                                                                         
Query: 113   agaccttctgacatgcacccaatggaaattgtggaagcgatagataagctgcaagaaaga 172
             ||||||||||| ||||| || ||||||||||||||||| || |||||||| || || |||
Sbjct: 16675 agaccttctgatatgcatccgatggaaattgtggaagctattgataagctccaggagaga 16616

                 
Query: 173   ctta 176
             ||||
Sbjct: 16615 ctta 16612



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 236   ttcaatatcctgcttcgtagcacatttgc 264
             |||||||| |||||||||||||| |||||
Sbjct: 16552 ttcaatattctgcttcgtagcacttttgc 16524

---

>gb|AY490550.1| Thuja occidentalis RNA polymerase II large subunit (rpb1) mRNA,
            partial cds
          Length = 3039

 Score =  111 bits (56), Expect = 2e-21
 Identities = 272/344 (79%)
 Strand = Plus / Plus

                                                                        
Query: 44   tggcctatgcctgtcaacctcaagcggcttatctggaatgctcagaagactttcaagatt 103
            |||||||||||||| || || ||  |||| ||||||||||| |||||||| ||||| |||
Sbjct: 2683 tggcctatgcctgtaaatctgaaaaggctcatctggaatgcccagaagacattcaaaatt 2742

                                                                        
Query: 104  gacttaagaagaccttctgacatgcacccaatggaaattgtggaagcgatagataagctg 163
            ||   ||| | ||  || || ||||| || ||||| ||||| ||||| || || ||||| 
Sbjct: 2743 gatccaaggaaacgatcagatatgcatcctatggagattgtagaagcaattgacaagctt 2802

                                                                        
Query: 164  caagaaagacttaaggttgtccctggtgatgatgccatgagcatcgaagctcagaagaac 223
            || ||||| || |||||||| || |||||||||  ||| || || || || |||||||| 
Sbjct: 2803 caggaaaggctaaaggttgttccaggtgatgatctcatcagtattgaggcccagaagaat 2862

                                                                        
Query: 224  gctactttattcttcaatatcctgcttcgtagcacatttgctagcaagagggtattgaaa 283
            || ||| | ||||||||||| || || || || |||||||| || ||  | ||| | || 
Sbjct: 2863 gccactcttttcttcaatattctactgcgcagtacatttgcaagtaaacgtgtactaaag 2922

                                                                        
Query: 284  gaatacaggcttacaaaggaatcttttgaatgggtcattggtgagattgaatcgagattc 343
            || |||   |||||||||||| | |||||||||||  ||||||||||||||||  | |||
Sbjct: 2923 gagtaccaccttacaaaggaagcatttgaatgggtagttggtgagattgaatctcgtttc 2982

                                                        
Query: 344  ctccagtctttggtagctcctggtgaaatgattggatgtgtggc 387
            || |||||| | |||||||| || || |||||||||||||||||
Sbjct: 2983 cttcagtctatagtagctccgggggagatgattggatgtgtggc 3026

---

>gb|AF519535.1| Cycas revoluta RNA polymerase II largest subunit (RPB1) mRNA, partial
            cds
          Length = 3039

 Score =  101 bits (51), Expect = 2e-18
 Identities = 264/335 (78%)
 Strand = Plus / Plus

                                                                        
Query: 44   tggcctatgcctgtcaacctcaagcggcttatctggaatgctcagaagactttcaagatt 103
            ||||| |||||||| || || ||| |||| ||||||||||| ||||| || ||||| |||
Sbjct: 2683 tggcccatgcctgtgaatctgaagaggctaatctggaatgcccagaaaacattcaaaatt 2742

                                                                        
Query: 104  gacttaagaagaccttctgacatgcacccaatggaaattgtggaagcgatagataagctg 163
            || || ||||  ||||| || ||||| || ||||| |||||||||||  | || ||||| 
Sbjct: 2743 gatttgagaaagccttcagatatgcatcccatggagattgtggaagctgttgacaagctt 2802

                                                                        
Query: 164  caagaaagacttaaggttgtccctggtgatgatgccatgagcatcgaagctcagaagaac 223
            || ||||| ||||| ||||| ||||| |||||    ||||| || || || || ||||| 
Sbjct: 2803 caggaaaggcttaaagttgttcctggcgatgaccttatgagtatagaggcccaaaagaat 2862

                                                                        
Query: 224  gctactttattcttcaatatcctgcttcgtagcacatttgctagcaagagggtattgaaa 283
            |||||| | || || || ||  | ||||| || ||||||||||| ||  | ||||| || 
Sbjct: 2863 gctactctcttttttaacattttacttcgcagtacatttgctagtaaacgtgtattaaag 2922

                                                                        
Query: 284  gaatacaggcttacaaaggaatcttttgaatgggtcattggtgagattgaatcgagattc 343
            |||||| ||||||| |  ||| | ||||||||||| |||||||||||||| ||  | |||
Sbjct: 2923 gaataccggcttaccagagaagcatttgaatgggtgattggtgagattgagtctcgtttc 2982

                                               
Query: 344  ctccagtctttggtagctcctggtgaaatgattgg 378
            || || |||||||| ||||| ||||| ||||||||
Sbjct: 2983 ctgcaatctttggtggctccaggtgagatgattgg 3017

---

>gb|AF519534.1| Zamia muricata RNA polymerase II largest subunit (RPB1) mRNA, partial
            cds
          Length = 3039

 Score = 89.7 bits (45), Expect = 6e-15
 Identities = 267/341 (78%)
 Strand = Plus / Plus

                                                                        
Query: 44   tggcctatgcctgtcaacctcaagcggcttatctggaatgctcagaagactttcaagatt 103
            |||||||||||||| || || ||| || | || |||||||| ||||| || ||||| |||
Sbjct: 2683 tggcctatgcctgtgaatctgaagaggttaatatggaatgcacagaaaacattcaaaatt 2742

                                                                        
Query: 104  gacttaagaagaccttctgacatgcacccaatggaaattgtggaagcgatagataagctg 163
            || || ||||  || || || ||||| || ||||| |||||||||||  | || ||||| 
Sbjct: 2743 gatttgagaaagccatcagatatgcatcccatggagattgtggaagctgttgacaagctt 2802

                                                                        
Query: 164  caagaaagacttaaggttgtccctggtgatgatgccatgagcatcgaagctcagaagaac 223
            || ||||| ||||| || || |||||||||||    ||||| || || || |||||||| 
Sbjct: 2803 caggaaaggcttaaagtggttcctggtgatgaccttatgagtatagaggcccagaagaat 2862

                                                                        
Query: 224  gctactttattcttcaatatcctgcttcgtagcacatttgctagcaagagggtattgaaa 283
            |||||| | ||||| || || || ||||| || |||||||| || ||  | ||||| || 
Sbjct: 2863 gctactctcttctttaacattctacttcgcagtacatttgccagtaaacgtgtattaaag 2922

                                                                        
Query: 284  gaatacaggcttacaaaggaatcttttgaatgggtcattggtgagattgaatcgagattc 343
            |||||| ||||||| |  ||| | ||||||||||| |||||||||||||| ||  | |||
Sbjct: 2923 gaataccggcttaccagagaagcatttgaatgggtgattggtgagattgagtctcgtttc 2982

                                                     
Query: 344  ctccagtctttggtagctcctggtgaaatgattggatgtgt 384
            || |||||| | || || || ||||| |||||||| |||||
Sbjct: 2983 ctgcagtctctcgtggcaccaggtgagatgattggttgtgt 3023

---

>gb|DQ020643.1| Antirrhinum majus RNA polymerase II largest subunit (RPB1) mRNA,
            partial cds
          Length = 2342

 Score = 83.8 bits (42), Expect = 4e-13
 Identities = 225/286 (78%)
 Strand = Plus / Plus

                                                                        
Query: 51   tgcctgtcaacctcaagcggcttatctggaatgctcagaagactttcaagattgacttaa 110
            ||||||||||| | | | ||||| |||  ||||| |||||||| || ||| |||| ||  
Sbjct: 1955 tgcctgtcaacattaggaggcttgtcttaaatgcacagaagacatttaaggttgatttcc 2014

                                                                        
Query: 111  gaagaccttctgacatgcacccaatggaaattgtggaagcgatagataagctgcaagaaa 170
            |||| |||||||| ||||| || |||||||||||||| ||  | |||||| | |||||||
Sbjct: 2015 gaaggccttctgatatgcatccgatggaaattgtggaggctgtggataagttacaagaaa 2074

                                                                        
Query: 171  gacttaaggttgtccctggtgatgatgccatgagcatcgaagctcagaagaacgctactt 230
            | ||||||||||||  ||||||||||    |||| || || || || ||||| |||||  
Sbjct: 2075 ggcttaaggttgtcgttggtgatgattatctgagtatggaggcccaaaagaatgctacac 2134

                                                                        
Query: 231  tattcttcaatatcctgcttcgtagcacatttgctagcaagagggtattgaaagaataca 290
            | ||||| |||||  ||||||| ||  | || ||||| || ||||| ||||| ||||| |
Sbjct: 2135 ttttctttaatatattgcttcgaagtgccttggctagtaaaagggttttgaaggaatata 2194

                                                          
Query: 291  ggcttacaaaggaatcttttgaatgggtcattggtgagattgaatc 336
            | || ||    ||| ||||||||||||| |||||||||||||||||
Sbjct: 2195 gactcactcgcgaagcttttgaatgggttattggtgagattgaatc 2240

---

>gb|AF519537.1| Welwitschia mirabilis RNA polymerase II largest subunit (RPB1) mRNA,
            partial cds
          Length = 3039

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 222/284 (78%)
 Strand = Plus / Plus

                                                                        
Query: 51   tgcctgtcaacctcaagcggcttatctggaatgctcagaagactttcaagattgacttaa 110
            ||||||| || |||||| ||||||| ||||||||||||||    || || |||||   ||
Sbjct: 2690 tgcctgtgaatctcaagaggcttatttggaatgctcagaaattgtttaaaattgatccaa 2749

                                                                        
Query: 111  gaagaccttctgacatgcacccaatggaaattgtggaagcgatagataagctgcaagaaa 170
            ||| | | || || |||||||| ||||||||| | || || || |||||||| || ||||
Sbjct: 2750 gaaaagcatcagatatgcaccccatggaaattattgatgccattgataagcttcaggaaa 2809

                                                                        
Query: 171  gacttaaggttgtccctggtgatgatgccatgagcatcgaagctcagaagaacgctactt 230
            |||||||||| ||||| ||  ||||  |  |||| || || || |||||||| |||||| 
Sbjct: 2810 gacttaaggtggtcccaggcaatgacccattgagtatagaggcccagaagaatgctactc 2869

                                                                        
Query: 231  tattcttcaatatcctgcttcgtagcacatttgctagcaagagggtattgaaagaataca 290
            | |||||||| ||| | |||||||| |||||||| || ||  |||| ||||| |||||| 
Sbjct: 2870 tcttcttcaacatcttacttcgtagtacatttgccagtaaacgggtgttgaaggaatacc 2929

                                                        
Query: 291  ggcttacaaaggaatcttttgaatgggtcattggtgagattgaa 334
              || || || ||| | ||||| ||||| |||||||| ||||||
Sbjct: 2930 acctgactaaagaagcatttgattgggtaattggtgaaattgaa 2973

---

>ref|NM_119746.2| Arabidopsis thaliana NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA
            binding / DNA-directed RNA polymerase AT4G35800 (NRPB1)
            mRNA, complete cds
          Length = 5893

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                      
Query: 51   tgcctgtcaacctcaagcggcttatctggaatgctcagaagactttcaagattgactt 108
            ||||||| ||| ||||| ||| |||||||||||| |||||||||||||| ||||||||
Sbjct: 2930 tgcctgttaacatcaagaggcatatctggaatgcgcagaagactttcaaaattgactt 2987



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 126/159 (79%)
 Strand = Plus / Plus

                                                                        
Query: 178  ggttgtccctggtgatgatgccatgagcatcgaagctcagaagaacgctactttattctt 237
            |||||| ||||||||||||||  ||||  | ||||| ||||| ||||| || || |||||
Sbjct: 3057 ggttgttcctggtgatgatgcgttgagtgtggaagcacagaaaaacgcaacattgttctt 3116

                                                                        
Query: 238  caatatcctgcttcgtagcacatttgctagcaagagggtattgaaagaatacaggcttac 297
             || ||  ||||||| |||||  ||||||| || || || ||| ||||||||| ||| | 
Sbjct: 3117 taacattttgcttcgcagcactcttgctagtaaaagagtgttggaagaatacaagctcag 3176

                                                   
Query: 298  aaaggaatcttttgaatgggtcattggtgagattgaatc 336
                ||  ||||||| |||||||||||||||||||||||
Sbjct: 3177 ccgcgaggcttttgagtgggtcattggtgagattgaatc 3215

---

>emb|X52954.1|ATRPII Arabidopsis thaliana rpII gene for RNA polymerase large subunit (EC
            2.7.7.6)
          Length = 9235

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                      
Query: 51   tgcctgtcaacctcaagcggcttatctggaatgctcagaagactttcaagattgactt 108
            ||||||| ||| ||||| ||| |||||||||||| |||||||||||||| ||||||||
Sbjct: 4982 tgcctgttaacatcaagaggcatatctggaatgcgcagaagactttcaaaattgactt 5039



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                          
Query: 307  ttttgaatgggtcattggtgagattgaatc 336
            |||||| |||||||||||||||||||||||
Sbjct: 5238 ttttgagtgggtcattggtgagattgaatc 5267

---

>emb|X52494.1|ATRPB1 Arabidopsis thaliana RPB1 gene for the largest subunit of RNA
            polymerase II
          Length = 8050

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                      
Query: 51   tgcctgtcaacctcaagcggcttatctggaatgctcagaagactttcaagattgactt 108
            ||||||| ||| ||||| ||| |||||||||||| |||||||||||||| ||||||||
Sbjct: 4826 tgcctgttaacatcaagaggcatatctggaatgcgcagaagactttcaaaattgactt 4883



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 126/159 (79%)
 Strand = Plus / Plus

                                                                        
Query: 178  ggttgtccctggtgatgatgccatgagcatcgaagctcagaagaacgctactttattctt 237
            |||||| ||||||||||||||  ||||  | ||||| ||||| ||||| || || |||||
Sbjct: 4953 ggttgttcctggtgatgatgcgttgagtgtggaagcacagaaaaacgcaacattgttctt 5012

                                                                        
Query: 238  caatatcctgcttcgtagcacatttgctagcaagagggtattgaaagaatacaggcttac 297
             || ||  ||||||| |||||  ||||||| || || || ||| ||||||||| ||| | 
Sbjct: 5013 taacattttgcttcgcagcactcttgctagtaaaagagtgttggaagaatacaagctcag 5072

                                                   
Query: 298  aaaggaatcttttgaatgggtcattggtgagattgaatc 336
                ||  ||||||| |||||||||||||||||||||||
Sbjct: 5073 ccgcgaggcttttgagtgggtcattggtgagattgaatc 5111

---

>emb|AL161588.2|ATCHRIV84 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 84
          Length = 195452

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                       
Query: 51    tgcctgtcaacctcaagcggcttatctggaatgctcagaagactttcaagattgactt 108
             ||||||| ||| ||||| ||| |||||||||||| |||||||||||||| ||||||||
Sbjct: 35686 tgcctgttaacatcaagaggcatatctggaatgcgcagaagactttcaaaattgactt 35629



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 126/159 (79%)
 Strand = Plus / Minus

                                                                         
Query: 178   ggttgtccctggtgatgatgccatgagcatcgaagctcagaagaacgctactttattctt 237
             |||||| ||||||||||||||  ||||  | ||||| ||||| ||||| || || |||||
Sbjct: 35559 ggttgttcctggtgatgatgcgttgagtgtggaagcacagaaaaacgcaacattgttctt 35500

                                                                         
Query: 238   caatatcctgcttcgtagcacatttgctagcaagagggtattgaaagaatacaggcttac 297
              || ||  ||||||| |||||  ||||||| || || || ||| ||||||||| ||| | 
Sbjct: 35499 taacattttgcttcgcagcactcttgctagtaaaagagtgttggaagaatacaagctcag 35440

                                                    
Query: 298   aaaggaatcttttgaatgggtcattggtgagattgaatc 336
                 ||  ||||||| |||||||||||||||||||||||
Sbjct: 35439 ccgcgaggcttttgagtgggtcattggtgagattgaatc 35401

---

>emb|AL031986.1|ATF4B14 Arabidopsis thaliana DNA chromosome 4, BAC clone F4B14 (ESSA project)
          Length = 99461

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                       
Query: 51    tgcctgtcaacctcaagcggcttatctggaatgctcagaagactttcaagattgactt 108
             ||||||| ||| ||||| ||| |||||||||||| |||||||||||||| ||||||||
Sbjct: 27490 tgcctgttaacatcaagaggcatatctggaatgcgcagaagactttcaaaattgactt 27433



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 126/159 (79%)
 Strand = Plus / Minus

                                                                         
Query: 178   ggttgtccctggtgatgatgccatgagcatcgaagctcagaagaacgctactttattctt 237
             |||||| ||||||||||||||  ||||  | ||||| ||||| ||||| || || |||||
Sbjct: 27363 ggttgttcctggtgatgatgcgttgagtgtggaagcacagaaaaacgcaacattgttctt 27304

                                                                         
Query: 238   caatatcctgcttcgtagcacatttgctagcaagagggtattgaaagaatacaggcttac 297
              || ||  ||||||| |||||  ||||||| || || || ||| ||||||||| ||| | 
Sbjct: 27303 taacattttgcttcgcagcactcttgctagtaaaagagtgttggaagaatacaagctcag 27244

                                                    
Query: 298   aaaggaatcttttgaatgggtcattggtgagattgaatc 336
                 ||  ||||||| |||||||||||||||||||||||
Sbjct: 27243 ccgcgaggcttttgagtgggtcattggtgagattgaatc 27205

---

>gb|DQ020644.1| Lycopersicon esculentum RNA polymerase II largest subunit (RPB1)
            mRNA, partial cds
          Length = 2319

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 111/137 (81%)
 Strand = Plus / Plus

                                                                        
Query: 119  tctgacatgcacccaatggaaattgtggaagcgatagataagctgcaagaaagacttaag 178
            ||||||||||| || ||||| || ||||||||  | |||||| | || || || ||||||
Sbjct: 2023 tctgacatgcatccgatggagatcgtggaagctgttgataagttacaggagaggcttaag 2082

                                                                        
Query: 179  gttgtccctggtgatgatgccatgagcatcgaagctcagaagaacgctactttattcttc 238
            ||||| ||||||||||||    | ||||| || ||||| ||||| |||||| | ||||||
Sbjct: 2083 gttgttcctggtgatgattatctaagcatggaggctcaaaagaatgctactcttttcttc 2142

                             
Query: 239  aatatcctgcttcgtag 255
            |||||| |||| |||||
Sbjct: 2143 aatatcttgctccgtag 2159

---

>gb|AF519542.1| Psilotum nudum RNA polymerase II largest subunit (RPB1) mRNA, partial
            cds
          Length = 3039

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 93/113 (82%)
 Strand = Plus / Plus

                                                                        
Query: 77   tggaatgctcagaagactttcaagattgacttaagaagaccttctgacatgcacccaatg 136
            |||||||||||||||| ||||||| | || || |||| |||||| || |||||||| |||
Sbjct: 2716 tggaatgctcagaagattttcaaggtggatttcagaaaaccttcagatatgcaccccatg 2775

                                                                 
Query: 137  gaaattgtggaagcgatagataagctgcaagaaagacttaaggttgtccctgg 189
            || ||||| |||||  | |||||||| || |||||| | || ||||| |||||
Sbjct: 2776 gagattgtagaagcagttgataagctccaggaaagattgaaagttgttcctgg 2828



 Score = 40.1 bits (20), Expect = 5.2
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                            
Query: 359  gctcctggtgaaatgattggatgtgtggctgc 390
            |||||||| ||||||||||| ||||| |||||
Sbjct: 2998 gctcctggggaaatgattggctgtgttgctgc 3029

---

>gb|AY490551.1| Taxus canadensis RNA polymerase II large subunit (rpb1) mRNA, partial
            cds
          Length = 3039

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 66/77 (85%)
 Strand = Plus / Plus

                                                                        
Query: 29   actggcgacaatacatggcctatgcctgtcaacctcaagcggcttatctggaatgctcag 88
            |||||||| ||  |||||||||||||||| || || ||| |||| ||||||||||| |||
Sbjct: 2668 actggcgataactcatggcctatgcctgtaaatctgaagaggctcatctggaatgcccag 2727

                             
Query: 89   aagactttcaagattga 105
            ||||| ||||| |||||
Sbjct: 2728 aagacattcaaaattga 2744



 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 77/92 (83%)
 Strand = Plus / Plus

                                                                        
Query: 293  cttacaaaggaatcttttgaatgggtcattggtgagattgaatcgagattcctccagtct 352
            |||||||||||| | || ||||||||  ||||||||||||||||  | ||||| ||||||
Sbjct: 2932 cttacaaaggaagcattcgaatgggtagttggtgagattgaatcccgtttccttcagtct 2991

                                            
Query: 353  ttggtagctcctggtgaaatgattggatgtgt 384
             | ||||| || || || ||||||||||||||
Sbjct: 2992 ctagtagccccaggagagatgattggatgtgt 3023

---

>gb|U90210.1|SSU90210 Spirogyra sp. RNA polymerase II largest subunit (rpb1) gene, partial
            cds
          Length = 2411

 Score = 65.9 bits (33), Expect = 9e-08
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                        
Query: 42   catggcctatgcctgtcaacctcaagcggcttatctggaatgctcagaagactttcaaga 101
            |||||||| | ||||||||| |||| ||||| ||||||||||| ||||||| ||||||||
Sbjct: 2017 catggcctcttcctgtcaacatcaaacggctgatctggaatgcgcagaagattttcaaga 2076

             
Query: 102  t 102
            |
Sbjct: 2077 t 2077

---

>gb|AY490552.1| Podocarpus macrophyllus RNA polymerase II large subunit (rpb1) mRNA,
            partial cds
          Length = 3039

 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 76/92 (82%)
 Strand = Plus / Plus

                                                                        
Query: 293  cttacaaaggaatcttttgaatgggtcattggtgagattgaatcgagattcctccagtct 352
            ||||| |||||| | ||||| |||||  ||||||| ||||||||  | ||||||||||| 
Sbjct: 2932 cttactaaggaagcatttgagtgggtagttggtgaaattgaatctcgtttcctccagtcc 2991

                                            
Query: 353  ttggtagctcctggtgaaatgattggatgtgt 384
            |||||||| || || || |||||||| |||||
Sbjct: 2992 ttggtagccccaggggagatgattggctgtgt 3023



 Score = 56.0 bits (28), Expect = 9e-05
 Identities = 117/144 (81%), Gaps = 2/144 (1%)
 Strand = Plus / Plus

                                                                        
Query: 47   cctatgcctgtcaacctcaagcggcttatctggaatgctcagaagactttcaagattga- 105
            ||||||||||| ||||| ||| |||| ||||||||||| || || || ||||||||||| 
Sbjct: 2686 cctatgcctgtaaacctgaagaggctaatctggaatgcccaaaaaacattcaagattgat 2745

                                                                        
Query: 106  cttaagaagaccttctgacatgcacccaatggaaattgtggaagcgatagataagctgca 165
            | || ||| ||| || || ||||| |||||||| ||||| ||||| || || |  || ||
Sbjct: 2746 cctaggaa-accatcagatatgcatccaatggagattgtagaagcaattgacagacttca 2804

                                    
Query: 166  agaaagacttaaggttgtccctgg 189
             ||||| ||||||||||| |||||
Sbjct: 2805 ggaaaggcttaaggttgttcctgg 2828

---

>gb|AY305605.1| Podura aquatica clone PaqBpol RNA polymerase II largest subunit
           mRNA, partial cds
          Length = 919

 Score = 48.1 bits (24), Expect = 0.021
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 306 cttttgaatgggtcattggtgagattga 333
           ||||||||||| ||||||||||||||||
Sbjct: 216 cttttgaatggctcattggtgagattga 243

---

>gb|AY601776.1|AY601775S2 Caenorhabditis sp. CB5161 RNA polymerase 2 gene, partial cds
          Length = 1214

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 74  atctggaatgctcagaagactttcaag 100
           ||||||||||||||||||| |||||||
Sbjct: 267 atctggaatgctcagaagattttcaag 293

---

>gb|AY490554.1| Ephedra viridis RNA polymerase II large subunit (rpb1) mRNA, partial
            cds
          Length = 3039

 Score = 46.1 bits (23), Expect = 0.085
 Identities = 35/39 (89%)
 Strand = Plus / Plus

                                                   
Query: 158  aagctgcaagaaagacttaaggttgtccctggtgatgat 196
            ||||| ||||| ||||| |||||||| ||||||||||||
Sbjct: 2797 aagcttcaagagagactaaaggttgttcctggtgatgat 2835

---

>gb|DQ223186.1| Cyanophora paradoxa strain CCAC 0074 DNA-dependent RNA polymerase II
            largest subunit (RPB1) mRNA, partial cds
          Length = 3000

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                      
Query: 51   tgcctgtcaacctcaagcggcttatctggaatgctcagaaga 92
            |||| |||||||||||||| || |||||||| || |||||||
Sbjct: 2630 tgcccgtcaacctcaagcgcctcatctggaacgcccagaaga 2671

---

>gb|AC153817.6| Mus musculus  BAC RP23-11P24 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 247508

 Score = 44.1 bits (22), Expect = 0.33
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 92     actttcaagattgacttaagaa 113
              ||||||||||||||||||||||
Sbjct: 114646 actttcaagattgacttaagaa 114625

---

>gb|AC121267.17| Mus musculus chromosome 19, clone RP24-444E1, complete sequence
          Length = 160720

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 368   gaaatgattggatgtgtggct 388
             |||||||||||||||||||||
Sbjct: 49459 gaaatgattggatgtgtggct 49439

---

>emb|AL161655.8| Human DNA sequence from clone RP11-116E13 on chromosome 20 Contains
             part of a novel gene, GSSs and STSs, complete sequence
          Length = 105191

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 369   aaatgattggatgtgtggctg 389
             |||||||||||||||||||||
Sbjct: 50291 aaatgattggatgtgtggctg 50311

---

>gb|AC112967.14| Mus musculus chromosome 19, clone RP24-151O21, complete sequence
          Length = 167743

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 368    gaaatgattggatgtgtggct 388
              |||||||||||||||||||||
Sbjct: 147752 gaaatgattggatgtgtggct 147732

---

>gb|AC162372.5| Mus musculus chromosome 19, clone RP23-177G18, complete sequence
          Length = 178801

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 368    gaaatgattggatgtgtggct 388
              |||||||||||||||||||||
Sbjct: 170202 gaaatgattggatgtgtggct 170222

---

>gb|DQ294584.1| Polychytrium aggregatum isolate AFTOL-ID-24 RNA polymerase II largest
            subunit (RPB1) gene, partial cds
          Length = 3389

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 56   gtcaacctcaagcggcttatctggaatgc 84
            |||||||||||||| || |||||||||||
Sbjct: 3045 gtcaacctcaagcgactgatctggaatgc 3073

---

>ref|NM_017131.2| Rattus norvegicus calsequestrin 2 (Casq2), mRNA
          Length = 2478

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 87   agaagactttcaagattgac 106
            ||||||||||||||||||||
Sbjct: 1108 agaagactttcaagattgac 1127

---

>ref|XM_513677.1| PREDICTED: Pan troglodytes similar to Calsequestrin, cardiac muscle
            isoform precursor (Calsequestrin 2) (LOC457150), mRNA
          Length = 1582

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 87   agaagactttcaagattgac 106
            ||||||||||||||||||||
Sbjct: 1157 agaagactttcaagattgac 1176

---

>ref|NM_001232.1| Homo sapiens calsequestrin 2 (cardiac muscle) (CASQ2), mRNA
          Length = 2528

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 87   agaagactttcaagattgac 106
            ||||||||||||||||||||
Sbjct: 1065 agaagactttcaagattgac 1084

---

>gb|AC145898.4| Pan troglodytes BAC clone RP43-9D19 from 7, complete sequence
          Length = 156789

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 66    agcggcttatctggaatgct 85
             ||||||||||||||||||||
Sbjct: 35604 agcggcttatctggaatgct 35585

---

>emb|AL450389.12| Human DNA sequence from clone RP5-929G5 on chromosome 1 Contains the
             VANGL1 gene for vang-like 1 (van gogh, Drosophila), the 3'
             end of the CASQ2 gene for calsequestrin 2 (cardiac muscle)
             and one CpG island, complete sequence
          Length = 101623

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 87    agaagactttcaagattgac 106
             ||||||||||||||||||||
Sbjct: 66403 agaagactttcaagattgac 66384

---

>ref|XM_501909.1| Yarrowia lipolytica CLIB122, YALI0C16566g predicted mRNA
          Length = 5166

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 306  cttttgaatgggtcattggtgagattga 333
            ||||||| |||||||| |||||||||||
Sbjct: 3047 cttttgagtgggtcatgggtgagattga 3074

---

>emb|AL391005.9| Human DNA sequence from clone RP11-288A5 on chromosome 10 Contains a
             forkhead box I1 (FOXI1) pseudogene and a CpG island,
             complete sequence
          Length = 163778

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 163   gcaagaaagacttaaggttg 182
             ||||||||||||||||||||
Sbjct: 27907 gcaagaaagacttaaggttg 27888

---

>emb|X55040.1|OCCALSEQ O.cuniculus mRNA for calsequestrin
          Length = 2510

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 87   agaagactttcaagattgac 106
            ||||||||||||||||||||
Sbjct: 1041 agaagactttcaagattgac 1060

---

>emb|BX511135.6| Zebrafish DNA sequence from clone CH211-134D21 in linkage group 5,
            complete sequence
          Length = 164976

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 256  cacatttgctagcaagagggtatt 279
            ||||||||||||||||||| ||||
Sbjct: 6676 cacatttgctagcaagaggctatt 6699

---

>emb|CR392331.15| Zebrafish DNA sequence from clone CH211-9F23 in linkage group 4,
             complete sequence
          Length = 170278

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 126   tgcacccaatggaaattgtg 145
             ||||||||||||||||||||
Sbjct: 53321 tgcacccaatggaaattgtg 53340

---

>emb|CR858976.1| Pongo pygmaeus mRNA; cDNA DKFZp468D075 (from clone DKFZp468D075)
          Length = 2670

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 87   agaagactttcaagattgac 106
            ||||||||||||||||||||
Sbjct: 1200 agaagactttcaagattgac 1219

---

>gb|AC159255.3| Mus musculus BAC clone RP24-89C11 from chromosome 3, complete sequence
          Length = 216011

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 87     agaagactttcaagattgac 106
              ||||||||||||||||||||
Sbjct: 140115 agaagactttcaagattgac 140134

---

>gb|U78721.3| Arabidopsis thaliana chromosome 2 clone T1B8 map TEn5, complete sequence
          Length = 114144

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 89     aagactttcaagattgactt 108
              ||||||||||||||||||||
Sbjct: 106452 aagactttcaagattgactt 106471

---

>gb|AC002341.3| Arabidopsis thaliana chromosome 2 clone T14G11 map TEn5, complete
            sequence
          Length = 82484

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 89   aagactttcaagattgactt 108
            ||||||||||||||||||||
Sbjct: 4152 aagactttcaagattgactt 4171

---

>ref|XM_704633.1| PREDICTED: Danio rerio POLR2A protein, transcript variant 4 (POLR2A),
            mRNA
          Length = 8092

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3183 atctggaatgctcagaagattttc 3206

---

>ref|XM_704631.1| PREDICTED: Danio rerio POLR2A protein, transcript variant 2 (POLR2A),
            mRNA
          Length = 8149

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3183 atctggaatgctcagaagattttc 3206

---

>ref|XM_704636.1| PREDICTED: Danio rerio POLR2A protein, transcript variant 7 (POLR2A),
            mRNA
          Length = 8017

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3183 atctggaatgctcagaagattttc 3206

---

>ref|XM_704635.1| PREDICTED: Danio rerio POLR2A protein, transcript variant 6 (POLR2A),
            mRNA
          Length = 7954

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3183 atctggaatgctcagaagattttc 3206

---

>ref|XM_704632.1| PREDICTED: Danio rerio POLR2A protein, transcript variant 3 (POLR2A),
            mRNA
          Length = 7831

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3183 atctggaatgctcagaagattttc 3206

---

>ref|XM_704640.1| PREDICTED: Danio rerio POLR2A protein, transcript variant 11
            (POLR2A), mRNA
          Length = 8098

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3189 atctggaatgctcagaagattttc 3212

---

>ref|XM_704638.1| PREDICTED: Danio rerio POLR2A protein, transcript variant 9 (POLR2A),
            mRNA
          Length = 8014

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3105 atctggaatgctcagaagattttc 3128

---

>ref|XM_704642.1| PREDICTED: Danio rerio POLR2A protein, transcript variant 13
            (POLR2A), mRNA
          Length = 8053

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3144 atctggaatgctcagaagattttc 3167

---

>ref|XM_704641.1| PREDICTED: Danio rerio POLR2A protein, transcript variant 12
            (POLR2A), mRNA
          Length = 7987

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3078 atctggaatgctcagaagattttc 3101

---

>ref|XM_704637.1| PREDICTED: Danio rerio POLR2A protein, transcript variant 8 (POLR2A),
            mRNA
          Length = 8104

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3171 atctggaatgctcagaagattttc 3194

---

>ref|XM_704634.1| PREDICTED: Danio rerio POLR2A protein, transcript variant 5 (POLR2A),
            mRNA
          Length = 7954

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3183 atctggaatgctcagaagattttc 3206

---

>ref|XM_704639.1| PREDICTED: Danio rerio POLR2A protein, transcript variant 10
            (POLR2A), mRNA
          Length = 8047

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3213 atctggaatgctcagaagattttc 3236

---

>ref|XM_677590.1| PREDICTED: Danio rerio POLR2A protein, transcript variant 1 (POLR2A),
            mRNA
          Length = 8170

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3183 atctggaatgctcagaagattttc 3206

---

>ref|XM_703295.1| PREDICTED: Danio rerio similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 15
            (LOC565891), mRNA
          Length = 8088

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3183 atctggaatgctcagaagattttc 3206

---

>ref|XM_703294.1| PREDICTED: Danio rerio similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 14
            (LOC565891), mRNA
          Length = 8052

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3183 atctggaatgctcagaagattttc 3206

---

>ref|XM_703293.1| PREDICTED: Danio rerio similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 13
            (LOC565891), mRNA
          Length = 8145

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3183 atctggaatgctcagaagattttc 3206

---

>ref|XM_703292.1| PREDICTED: Danio rerio similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 12
            (LOC565891), mRNA
          Length = 8013

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3183 atctggaatgctcagaagattttc 3206

---

>ref|XM_703291.1| PREDICTED: Danio rerio similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 11
            (LOC565891), mRNA
          Length = 7827

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3183 atctggaatgctcagaagattttc 3206

---

>ref|XM_703290.1| PREDICTED: Danio rerio similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 10
            (LOC565891), mRNA
          Length = 7950

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3183 atctggaatgctcagaagattttc 3206

---

>ref|XM_703289.1| PREDICTED: Danio rerio similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 9 (LOC565891),
            mRNA
          Length = 8049

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3144 atctggaatgctcagaagattttc 3167

---

>ref|XM_703288.1| PREDICTED: Danio rerio similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 8 (LOC565891),
            mRNA
          Length = 8010

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3105 atctggaatgctcagaagattttc 3128

---

>ref|XM_703287.1| PREDICTED: Danio rerio similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 7 (LOC565891),
            mRNA
          Length = 8100

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3195 atctggaatgctcagaagattttc 3218

---

>ref|XM_703286.1| PREDICTED: Danio rerio similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 6 (LOC565891),
            mRNA
          Length = 8094

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3189 atctggaatgctcagaagattttc 3212

---

>ref|XM_703285.1| PREDICTED: Danio rerio similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 5 (LOC565891),
            mRNA
          Length = 8100

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3171 atctggaatgctcagaagattttc 3194

---

>ref|XM_703284.1| PREDICTED: Danio rerio similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 4 (LOC565891),
            mRNA
          Length = 7950

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3183 atctggaatgctcagaagattttc 3206

---

>ref|XM_703283.1| PREDICTED: Danio rerio similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 3 (LOC565891),
            mRNA
          Length = 8001

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3234 atctggaatgctcagaagattttc 3257

---

>ref|XM_703282.1| PREDICTED: Danio rerio similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 2 (LOC565891),
            mRNA
          Length = 8043

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3213 atctggaatgctcagaagattttc 3236

---

>ref|XM_681282.1| PREDICTED: Danio rerio similar to DNA-directed RNA polymerase II
            largest subunit (RPB1), transcript variant 1 (LOC565891),
            mRNA
          Length = 8166

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 74   atctggaatgctcagaagactttc 97
            ||||||||||||||||||| ||||
Sbjct: 3183 atctggaatgctcagaagattttc 3206

---

>emb|BX005475.19| Zebrafish DNA sequence from clone CH211-165I18 in linkage group 4,
             complete sequence
          Length = 157194

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 126   tgcacccaatggaaattgtg 145
             ||||||||||||||||||||
Sbjct: 40085 tgcacccaatggaaattgtg 40104

---

>gb|BC022288.1| Homo sapiens calsequestrin 2 (cardiac muscle), mRNA (cDNA clone
            MGC:22461 IMAGE:4289141), complete cds
          Length = 2634

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 87   agaagactttcaagattgac 106
            ||||||||||||||||||||
Sbjct: 1129 agaagactttcaagattgac 1148

---

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 96      tcaagattgacttaagaaga 115
               ||||||||||||||||||||
Sbjct: 4993034 tcaagattgacttaagaaga 4993053

---

>dbj|AP002746.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0671B11
          Length = 168372

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 96    tcaagattgacttaagaaga 115
             ||||||||||||||||||||
Sbjct: 93487 tcaagattgacttaagaaga 93506

---

>gb|BC092229.1| Mus musculus calsequestrin 2, mRNA (cDNA clone MGC:115896
            IMAGE:30603069), complete cds
          Length = 2457

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 87   agaagactttcaagattgac 106
            ||||||||||||||||||||
Sbjct: 1053 agaagactttcaagattgac 1072

---

>dbj|AK129891.1| Homo sapiens cDNA FLJ26381 fis, clone HRT06737, highly similar to
            Calsequestrin, cardiac muscle isoform precursor
          Length = 2675

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 87   agaagactttcaagattgac 106
            ||||||||||||||||||||
Sbjct: 1195 agaagactttcaagattgac 1214

---

>dbj|AK129831.1| Homo sapiens cDNA FLJ26321 fis, clone HRT00385, highly similar to
           Homo sapiens calsequestrin 2 (cardiac muscle) (CASQ2)
          Length = 1561

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 87  agaagactttcaagattgac 106
           ||||||||||||||||||||
Sbjct: 75  agaagactttcaagattgac 94

---

>gb|AF001334.1|AF001334 Rattus norvegicus cardiac calsequestrin gene, partial cds
          Length = 2153

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 87  agaagactttcaagattgac 106
           ||||||||||||||||||||
Sbjct: 810 agaagactttcaagattgac 829

---

>emb|BX855614.13| Zebrafish DNA sequence from clone DKEY-262G12 in linkage group 4,
              complete sequence
          Length = 157594

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 126    tgcacccaatggaaattgtg 145
              ||||||||||||||||||||
Sbjct: 114896 tgcacccaatggaaattgtg 114915

---

>emb|CT571245.12| Mouse DNA sequence from clone RP23-2N7 on chromosome 12, complete
              sequence
          Length = 198268

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 307    ttttgaatgggtcattggtg 326
              ||||||||||||||||||||
Sbjct: 127519 ttttgaatgggtcattggtg 127538

---

>gb|U91483.1|MMU91483 Mus musculus cardiac calsequestrin mRNA, complete cds
          Length = 2070

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 87  agaagactttcaagattgac 106
           ||||||||||||||||||||
Sbjct: 959 agaagactttcaagattgac 978

---

>gb|AF068244.1|AF068244 Mus musculus cardiac calsequestrin mRNA, complete cds
          Length = 2275

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 87   agaagactttcaagattgac 106
            ||||||||||||||||||||
Sbjct: 1085 agaagactttcaagattgac 1104

---

>ref|NM_009814.1| Mus musculus calsequestrin 2 (Casq2), mRNA
          Length = 2070

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 87  agaagactttcaagattgac 106
           ||||||||||||||||||||
Sbjct: 959 agaagactttcaagattgac 978

---

>gb|BC072547.1| Rattus norvegicus calsequestrin 2, mRNA (cDNA clone MGC:91724
            IMAGE:7105911), complete cds
          Length = 2465

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 87   agaagactttcaagattgac 106
            ||||||||||||||||||||
Sbjct: 1095 agaagactttcaagattgac 1114

---

>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica
          Length = 3272609

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 306     cttttgaatgggtcattggtgagattga 333
               ||||||| |||||||| |||||||||||
Sbjct: 2337375 cttttgagtgggtcatgggtgagattga 2337348

---

>emb|AL929346.5| Zebrafish DNA sequence from clone DKEY-38P12, complete sequence
          Length = 232537

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 74    atctggaatgctcagaagactttc 97
             ||||||||||||||||||| ||||
Sbjct: 14852 atctggaatgctcagaagattttc 14829

---

>emb|AL929106.5| Mouse DNA sequence from clone RP23-446N16 on chromosome 2, complete
             sequence
          Length = 130872

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 224   gctactttattcttcaatat 243
             ||||||||||||||||||||
Sbjct: 75865 gctactttattcttcaatat 75884

---

>gb|U33287.1|RNU33287 Rattus norvegicus calsequestrin mRNA, complete cds
          Length = 1681

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 87   agaagactttcaagattgac 106
            ||||||||||||||||||||
Sbjct: 1089 agaagactttcaagattgac 1108

---

>emb|AL606529.9| Human DNA sequence from clone RP4-744B2 on chromosome 1, complete
             sequence
          Length = 66822

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 87    agaagactttcaagattgac 106
             ||||||||||||||||||||
Sbjct: 34328 agaagactttcaagattgac 34309

---

>dbj|D55655.1| Homo sapiens mRNA for cardiac calsequestrin, complete cds
          Length = 2528

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 87   agaagactttcaagattgac 106
            ||||||||||||||||||||
Sbjct: 1065 agaagactttcaagattgac 1084


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,146,740
Number of Sequences: 3902068
Number of extensions: 3146740
Number of successful extensions: 54517
Number of sequences better than 10.0: 102
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54316
Number of HSP's gapped (non-prelim): 191
length of query: 391
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 369
effective length of database: 17,147,199,772
effective search space: 6327316715868
effective search space used: 6327316715868
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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