ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl11f11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MSH2_MAIZE (Q9XGC9) DNA mismatch repair protein MSH2 (MUS1) 167 6e-42
2MSH2_ARATH (O24617) DNA mismatch repair protein MSH2 (AtMsh2) 135 2e-32
3MSH2_NEUCR (O13396) DNA mismatch repair protein msh-2 73 2e-13
4MSH2_CERAE (Q5XXB5) DNA mismatch repair protein Msh2 (MutS prote... 60 2e-09
5MSH2_MOUSE (P43247) DNA mismatch repair protein Msh2 (MutS prote... 59 2e-09
6MSH2_HUMAN (P43246) DNA mismatch repair protein Msh2 (MutS prote... 59 3e-09
7MSH2_BOVIN (Q3MHE4) DNA mismatch repair protein Msh2 (MutS prote... 56 2e-08
8MSH2_RAT (P54275) DNA mismatch repair protein Msh2 (MutS protein... 54 1e-07
9MSH2_SCHPO (O74773) DNA mismatch repair protein msh2 54 1e-07
10MSH2_YEAST (P25847) DNA mismatch repair protein MSH2 50 1e-06
11MSH2_DROME (P43248) DNA mismatch repair protein spellchecker 1 42 4e-04
12GFI1_HUMAN (Q99684) Zinc finger protein Gfi-1 (Growth factor ind... 33 0.23
13PI5PA_MOUSE (P59644) Phosphatidylinositol 4,5-bisphosphate 5-pho... 32 0.30
14ATM_GIBZE (Q4IB89) Serine/threonine-protein kinase TEL1 (EC 2.7.... 32 0.51
15RASH_MSVHA (P01115) Transforming protein p29 precursor [Contains... 30 1.1
16PI5PA_RAT (Q9JMC1) Phosphatidylinositol 4,5-bisphosphate 5-phosp... 30 1.5
17MURG_BRUME (Q8YI66) UDP-N-acetylglucosamine--N-acetylmuramyl-(pe... 30 2.0
18MURG_BRUAB (Q57C78) UDP-N-acetylglucosamine--N-acetylmuramyl-(pe... 30 2.0
19TOPI_DROME (Q9VH70) Testis-specific zinc finger protein topi (Pr... 28 4.3
20DPO41_METMA (Q8PYH6) DNA polymerase IV 1 (EC 2.7.7.7) (Pol IV 1) 28 4.3
21KPC2_DROME (P13677) Protein kinase C, eye isozyme (EC 2.7.11.13)... 28 4.3
22MORC2_HUMAN (Q9Y6X9) MORC family CW-type zinc finger 2 (Zinc fin... 28 5.7
23SKI3_YEAST (P17883) Superkiller 3 protein 28 5.7
24Y406_METJA (Q57849) Hypothetical sugar kinase MJ0406 28 5.7
25SEM6C_HUMAN (Q9H3T2) Semaphorin-6C precursor (Semaphorin Y) (Sem... 28 5.7
26CDC2D_ANTMA (Q38775) Cell division control protein 2 homolog D (... 28 5.7
27MURG_BRUSU (Q8CY39) UDP-N-acetylglucosamine--N-acetylmuramyl-(pe... 28 7.4
28UBQL1_MOUSE (Q8R317) Ubiquilin-1 (Protein linking IAP with cytos... 28 7.4
29F18B2_HUMAN (Q96ET8) Protein FAM18B2 28 7.4
30DOPR2_DROME (Q24563) Dopamine receptor 2 28 7.4
31ERC2_RAT (Q8K3M6) ERC protein 2 (CAZ-associated structural prote... 28 7.4
32ERC2_MOUSE (Q6PH08) ERC protein 2 (CAZ-associated structural pro... 28 7.4
33ERC2_HUMAN (O15083) ERC protein 2 28 7.4
34SF04_HUMAN (Q8IWZ8) Splicing factor 4 (RNA-binding protein RBP) 27 9.7
35CCPR_KLULA (Q6CW24) Cytochrome c peroxidase, mitochondrial precu... 27 9.7
36PPRB_MOUSE (Q925J9) Peroxisome proliferator-activated receptor-b... 27 9.7

>MSH2_MAIZE (Q9XGC9) DNA mismatch repair protein MSH2 (MUS1)|
          Length = 942

 Score =  167 bits (423), Expect = 6e-42
 Identities = 79/94 (84%), Positives = 87/94 (92%)
 Frame = +2

Query: 53  MDSEDFLPEGGKLPELKLDARQAQGFISFFKKLPKDPRAIRLFDRRDYYTAHGENATFIA 232
           M+ +DF PEGGKLPE KLDARQAQGFISFFKKLP+DPRA+RLFDRRDYYTAHGENATFIA
Sbjct: 1   MEGDDFTPEGGKLPEFKLDARQAQGFISFFKKLPQDPRAVRLFDRRDYYTAHGENATFIA 60

Query: 233 KAYYHTMTALRQLGGNSDGISSVSVSRAMFETIA 334
           + YYHTM+ALRQLG +SDGI S SVS+AMFETIA
Sbjct: 61  RTYYHTMSALRQLGSSSDGILSASVSKAMFETIA 94



to top

>MSH2_ARATH (O24617) DNA mismatch repair protein MSH2 (AtMsh2)|
          Length = 937

 Score =  135 bits (341), Expect = 2e-32
 Identities = 64/86 (74%), Positives = 73/86 (84%)
 Frame = +2

Query: 77  EGGKLPELKLDARQAQGFISFFKKLPKDPRAIRLFDRRDYYTAHGENATFIAKAYYHTMT 256
           E  KLPELKLDA+QAQGF+SF+K LP D RA+R FDR+DYYTAHGEN+ FIAK YYHT T
Sbjct: 7   EQNKLPELKLDAKQAQGFLSFYKTLPNDTRAVRFFDRKDYYTAHGENSVFIAKTYYHTTT 66

Query: 257 ALRQLGGNSDGISSVSVSRAMFETIA 334
           ALRQLG  S+ +SSVS+SR MFETIA
Sbjct: 67  ALRQLGSGSNALSSVSISRNMFETIA 92



to top

>MSH2_NEUCR (O13396) DNA mismatch repair protein msh-2|
          Length = 937

 Score = 73.2 bits (178), Expect = 2e-13
 Identities = 39/79 (49%), Positives = 55/79 (69%), Gaps = 2/79 (2%)
 Frame = +2

Query: 92  PELKLDARQAQGFISFFKKLPK-DPRAIRLFDRRDYYTAHGENATFIAKAYYHTMTALRQ 268
           PELK+D     GFI F+K LP+    AIR+FDR D+YTAHG++ATFIA+  Y T + +RQ
Sbjct: 5   PELKVD--DEHGFIRFYKSLPQLGEEAIRIFDRGDWYTAHGDDATFIARTVYKTTSVIRQ 62

Query: 269 LG-GNSDGISSVSVSRAMF 322
           LG  +  G+ SV+++  +F
Sbjct: 63  LGRSDHTGLPSVTMTVTVF 81



to top

>MSH2_CERAE (Q5XXB5) DNA mismatch repair protein Msh2 (MutS protein homolog 2)|
          Length = 933

 Score = 59.7 bits (143), Expect = 2e-09
 Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
 Frame = +2

Query: 98  LKLDARQAQGFISFFKKLPKDPRA-IRLFDRRDYYTAHGENATFIAKAYYHTMTALRQLG 274
           L+L++    GF+ FF+ +P+ P   +RLFDR D+YTAHGE+A   A+  + T   ++ +G
Sbjct: 9   LQLESAAEVGFVRFFQSMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMG 68

Query: 275 -GNSDGISSVSVSRAMFET 328
              +  + SV +S+  FE+
Sbjct: 69  PAGAKNLQSVVLSKMNFES 87



to top

>MSH2_MOUSE (P43247) DNA mismatch repair protein Msh2 (MutS protein homolog 2)|
          Length = 935

 Score = 59.3 bits (142), Expect = 2e-09
 Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
 Frame = +2

Query: 98  LKLDARQAQGFISFFKKLPKDPRA-IRLFDRRDYYTAHGENATFIAKAYYHTMTALRQLG 274
           L+L+     GF+ FF+ +P+ P   +RLFDR D+YTAHGE+A   A+  + T   ++ +G
Sbjct: 9   LQLEGAAEAGFVRFFEGMPEKPSTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMG 68

Query: 275 -GNSDGISSVSVSRAMFET 328
              S  + SV +S+  FE+
Sbjct: 69  PAGSKTLQSVVLSKMNFES 87



to top

>MSH2_HUMAN (P43246) DNA mismatch repair protein Msh2 (MutS protein homolog 2)|
          Length = 934

 Score = 58.9 bits (141), Expect = 3e-09
 Identities = 29/79 (36%), Positives = 49/79 (62%), Gaps = 2/79 (2%)
 Frame = +2

Query: 98  LKLDARQAQGFISFFKKLPKDPRA-IRLFDRRDYYTAHGENATFIAKAYYHTMTALRQLG 274
           L+L++    GF+ FF+ +P+ P   +RLFDR D+YTAHGE+A   A+  + T   ++ +G
Sbjct: 9   LQLESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMG 68

Query: 275 -GNSDGISSVSVSRAMFET 328
              +  + SV +S+  FE+
Sbjct: 69  PAGAKNLQSVVLSKMNFES 87



to top

>MSH2_BOVIN (Q3MHE4) DNA mismatch repair protein Msh2 (MutS protein homolog 2)|
          Length = 934

 Score = 56.2 bits (134), Expect = 2e-08
 Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
 Frame = +2

Query: 98  LKLDARQAQGFISFFKKLPKDPRA-IRLFDRRDYYTAHGENATFIAKAYYHTMTALRQLG 274
           L+LD+    GF+ FF+ +P+ P   +RLFDR D+YTAH E+A   A+  + T   ++ +G
Sbjct: 9   LQLDSAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHREDALLAAREVFKTQGVVKYMG 68

Query: 275 -GNSDGISSVSVSRAMFET 328
              +  + SV +S+  FE+
Sbjct: 69  PAGAKTLESVVLSKMNFES 87



to top

>MSH2_RAT (P54275) DNA mismatch repair protein Msh2 (MutS protein homolog 2)|
          Length = 933

 Score = 53.9 bits (128), Expect = 1e-07
 Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
 Frame = +2

Query: 98  LKLDARQAQGFISFFKKLPKDPRA-IRLFDRRDYYTAHGENATFIAKAYYHTMTALRQLG 274
           L+L+     GF+ FF+ +P+ P   + LFDR D+YTAHGE+A   A+  + T   ++ +G
Sbjct: 9   LQLEGAAEVGFVRFFEGMPEKPSTTVGLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMG 68

Query: 275 -GNSDGISSVSVSRAMFET 328
              +  + +V +S+  FE+
Sbjct: 69  PAGAKTLQTVVLSKMNFES 87



to top

>MSH2_SCHPO (O74773) DNA mismatch repair protein msh2|
          Length = 982

 Score = 53.5 bits (127), Expect = 1e-07
 Identities = 24/63 (38%), Positives = 42/63 (66%)
 Frame = +2

Query: 134 SFFKKLPKDPRAIRLFDRRDYYTAHGENATFIAKAYYHTMTALRQLGGNSDGISSVSVSR 313
           +F++K+PKD   +R+FDR ++Y A GE+A+F+A+  YHT + L+    N    S  ++S 
Sbjct: 20  NFYEKMPKDTNTVRVFDRGEFYVAIGEDASFVAQNAYHTTSVLKH--HNVSNTSYCNLSP 77

Query: 314 AMF 322
           ++F
Sbjct: 78  SLF 80



to top

>MSH2_YEAST (P25847) DNA mismatch repair protein MSH2|
          Length = 964

 Score = 50.4 bits (119), Expect = 1e-06
 Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
 Frame = +2

Query: 92  PELKL-DARQAQGFISFFKKLPKDP-RAIRLFDRRDYYTAHGENATFIAKAYYHTMTALR 265
           PELK  D  + + F   +  LPK P + IRL D+ DYYT  G +A F+A + YHT + L+
Sbjct: 6   PELKFSDVSEERNFYKKYTGLPKKPLKTIRLVDKGDYYTVIGSDAIFVADSVYHTQSVLK 65



to top

>MSH2_DROME (P43248) DNA mismatch repair protein spellchecker 1|
          Length = 917

 Score = 42.0 bits (97), Expect = 4e-04
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
 Frame = +2

Query: 92  PELKLDARQAQGFISFFKKLPKDPRA-IRLFDRRDYYTAHG-ENATFIAKAYYHTMTALR 265
           P L +D    + FI F  KL + P   +R FD  D YT HG ++   +AK  Y +   + 
Sbjct: 12  PTLNMDTNARRNFIKFHAKLGEKPATTVRFFDHTDRYTVHGSDDCELVAKIVYKSTAFIG 71

Query: 266 QL--GGNSDGISSVSVSRAMFE 325
            L      + +  VS+S+  FE
Sbjct: 72  ALLPDDKKETLQFVSMSKGNFE 93



to top

>GFI1_HUMAN (Q99684) Zinc finger protein Gfi-1 (Growth factor independence 1)|
          Length = 422

 Score = 32.7 bits (73), Expect = 0.23
 Identities = 17/36 (47%), Positives = 18/36 (50%)
 Frame = +1

Query: 19  PALPPSTPAGLYGQRRLLAGGGKAPGAQARCEASPG 126
           PA  P  PA LYG +R  A GG   GA   C A  G
Sbjct: 157 PAPEPGHPAALYGPKR--AAGGAGAGAPGSCSAGAG 190



to top

>PI5PA_MOUSE (P59644) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC|
           3.1.3.56)
          Length = 1003

 Score = 32.3 bits (72), Expect = 0.30
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +1

Query: 4   SPSRSPALPPSTPAGLYGQRRLLAGGGKAPGAQARCEASP 123
           SP+RSP LPP+    L       AG G+ P    + + SP
Sbjct: 356 SPNRSPCLPPAPEVALPKPVTQAAGSGRCPSPNLQAQESP 395



to top

>ATM_GIBZE (Q4IB89) Serine/threonine-protein kinase TEL1 (EC 2.7.11.1)|
           (DNA-damage checkpoint kinase TEL1) (Telomere length
           regulation protein 1) (ATM homolog)
          Length = 2813

 Score = 31.6 bits (70), Expect = 0.51
 Identities = 20/47 (42%), Positives = 27/47 (57%)
 Frame = +1

Query: 16  SPALPPSTPAGLYGQRRLLAGGGKAPGAQARCEASPGFHLLLQEVAE 156
           SPAL  S+PA   G  R  +GG   P  Q++  A+PG   LL++V E
Sbjct: 194 SPALTRSSPAPGSGYSR--SGGRSTPSTQSQRRAAPGEGGLLKDVLE 238



to top

>RASH_MSVHA (P01115) Transforming protein p29 precursor [Contains: Transforming|
           protein p21]
          Length = 241

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +1

Query: 1   ISPSRSPALPPSTPAGLYGQRRLLAGGGKAPGAQARCEASPGFHLLL 141
           ++P R+PALP   P    G     +GG +APG  A  EA   + L++
Sbjct: 18  VAPVRAPALPRPAP----GAVAPASGGARAPGLAAPVEAMTEYKLVV 60



to top

>PI5PA_RAT (Q9JMC1) Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A (EC|
           3.1.3.56) (Proline-rich inositol polyphosphate
           5-phosphatase)
          Length = 1001

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +1

Query: 4   SPSRSPALPPSTPAGLYGQRRLLAGGGKAPGAQARCEASP 123
           SP+RSP +PP+    L       AG GK P    + + SP
Sbjct: 356 SPNRSPCVPPAPEVALPRPVTQGAGPGKCPSPNLQTQESP 395



to top

>MURG_BRUME (Q8YI66) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)|
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase (EC 2.4.1.227)
           (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc
           transferase)
          Length = 379

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
 Frame = +1

Query: 4   SPSRSPAL----PPSTPAGLYGQRRLLAGGGKAPGAQARCEASPGFHLLLQE 147
           +P RSP L     P TPAG   + RLL  GG + GAQ   +A P    LL E
Sbjct: 166 NPVRSPVLVAAATPYTPAGKDDRFRLLVFGG-SQGAQFFSQAIPAAVALLPE 216



to top

>MURG_BRUAB (Q57C78) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)|
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase (EC 2.4.1.227)
           (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc
           transferase)
          Length = 379

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
 Frame = +1

Query: 4   SPSRSPAL----PPSTPAGLYGQRRLLAGGGKAPGAQARCEASPGFHLLLQE 147
           +P RSP L     P TPAG   + RLL  GG + GAQ   +A P    LL E
Sbjct: 166 NPVRSPVLVAAATPYTPAGKDDRFRLLVFGG-SQGAQFFSQAIPAAVALLPE 216



to top

>TOPI_DROME (Q9VH70) Testis-specific zinc finger protein topi (Protein|
           matotopetli)
          Length = 814

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -1

Query: 299 HLRFHQSYRPVALRQSLCD-SMPLQ*RLHSHHEQCN 195
           HLRFHQ  +P   ++  CD    ++  L+ H  +C+
Sbjct: 529 HLRFHQGVKPFVCQEENCDRKFTIRPDLNDHIRKCH 564



to top

>DPO41_METMA (Q8PYH6) DNA polymerase IV 1 (EC 2.7.7.7) (Pol IV 1)|
          Length = 365

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +2

Query: 143 KKLPKDPRAIRLFDRRDYYTAHGENATFIAKAYYHTMTALRQLGGNSDGISSVSVSRAMF 322
           KKL  +P A+ L  R+D+YT+  +    I ++Y           GN D    +SV  A  
Sbjct: 68  KKL--NPEAVFLPVRKDFYTSVSDRIMEILRSYADP--------GNGDSFEQISVDEAFL 117

Query: 323 ET 328
           E+
Sbjct: 118 ES 119



to top

>KPC2_DROME (P13677) Protein kinase C, eye isozyme (EC 2.7.11.13) (PKC)|
          (dPKC53E(EY)) (Protein INAC) (Inactivation no
          after-potential C protein) (Photoreceptor-specific PKC)
          (Eye-PKC)
          Length = 700

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +1

Query: 25 LPPSTPAGLYGQRRLLAGGGKAPG 96
          LPPS P+   G +   AG GK PG
Sbjct: 14 LPPSVPSAAPGAKAPAAGAGKGPG 37



to top

>MORC2_HUMAN (Q9Y6X9) MORC family CW-type zinc finger 2 (Zinc finger CW-type|
           coiled-coil domain protein 1)
          Length = 970

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 4   SPSRSPALPPSTPAGLYGQRRLLAGGGKAPGAQARCEAS 120
           +PSR P+LP   PA    +  +++   K P   AR EAS
Sbjct: 563 APSRPPSLPTPRPASQPRKAPVISSTPKLPALAAREEAS 601



to top

>SKI3_YEAST (P17883) Superkiller 3 protein|
          Length = 1432

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +2

Query: 104 LDARQAQGFISFFKKLPKDPRAIRLF 181
           LD   A   I +FKK PKDP A+ L+
Sbjct: 297 LDNMDAPLIIKYFKKFPKDPLAMILY 322



to top

>Y406_METJA (Q57849) Hypothetical sugar kinase MJ0406|
          Length = 302

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 19/74 (25%), Positives = 33/74 (44%)
 Frame = +2

Query: 80  GGKLPELKLDARQAQGFISFFKKLPKDPRAIRLFDRRDYYTAHGENATFIAKAYYHTMTA 259
           GGK+ ++      A  +I   +K P+   +I++   R YY     N          T   
Sbjct: 2   GGKMEKITCVGHTALDYIFNVEKFPEPNTSIQIPSARKYYGGAAAN----------TAVG 51

Query: 260 LRQLGGNSDGISSV 301
           +++LG NS+ +S V
Sbjct: 52  IKKLGVNSELLSCV 65



to top

>SEM6C_HUMAN (Q9H3T2) Semaphorin-6C precursor (Semaphorin Y) (Sema Y)|
          Length = 930

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 9/54 (16%)
 Frame = +1

Query: 4   SPSRSPALPPSTPAGLYGQRRLLAGGGKAP---------GAQARCEASPGFHLL 138
           +P+R     P+   G+ G RRL   G +AP         G  +R    PG HLL
Sbjct: 831 APARPALSAPAPRLGVGGGRRLPFSGHRAPPALLTRVPSGGPSRYSGGPGKHLL 884



to top

>CDC2D_ANTMA (Q38775) Cell division control protein 2 homolog D (EC 2.7.11.22)|
           (EC 2.7.11.23)
          Length = 312

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
 Frame = +2

Query: 131 ISFFKKLPKDPRAIRLFDRRDYYTAHGENATFIAKAYYHT--MTALRQLGGNSDGISSVS 304
           +S  + L +DP  +RL D +      G+   ++   Y  T     +R      + I+ ++
Sbjct: 62  VSLLRMLSRDPHVVRLLDVKQGQNKEGKTVLYLVFEYMDTDLKKYIRSFKQTGESIAPMN 121

Query: 305 VSRAMFE 325
           V   M++
Sbjct: 122 VKSLMYQ 128



to top

>MURG_BRUSU (Q8CY39) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)|
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase (EC 2.4.1.227)
           (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc
           transferase)
          Length = 379

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +1

Query: 4   SPSRSPAL----PPSTPAGLYGQRRLLAGGGKAPGAQARCEASPGFHLLLQE 147
           +P R P L     P TPAG   + RLL  GG + GAQ   +A P    LL E
Sbjct: 166 NPVRPPVLVAAATPYTPAGKDDRFRLLVFGG-SQGAQFFSQAIPAAVALLPE 216



to top

>UBQL1_MOUSE (Q8R317) Ubiquilin-1 (Protein linking IAP with cytoskeleton 1)|
           (PLIC-1)
          Length = 582

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +1

Query: 10  SRSPALPPSTPAGLYGQRRLLAGGGKAPGAQARCEASPGFHLLLQEVAE 156
           S S     STPAG     +  +G    PGA A    +PG   LLQ++ E
Sbjct: 337 STSGGTATSTPAG-----QSTSGPSLVPGAGASMFNTPGMQSLLQQITE 380



to top

>F18B2_HUMAN (Q96ET8) Protein FAM18B2|
          Length = 276

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +1

Query: 40  PAGLYGQRRLLA--GGGKAPGAQARCEASPGFHL 135
           PA L+   RL A  GGG++P ++   E  P FHL
Sbjct: 238 PARLFLSLRLWAWRGGGESPNSRGTGEPGPKFHL 271



to top

>DOPR2_DROME (Q24563) Dopamine receptor 2|
          Length = 539

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = -1

Query: 218 HSHHEQCNNPGDQIDEWPEDPSATS*RRR*NPGLASH 108
           HSHH   N+ G      PE+P         N GLA H
Sbjct: 359 HSHHHHHNHGGGTTTSTPEEPDDEPLSALHNNGLARH 395



to top

>ERC2_RAT (Q8K3M6) ERC protein 2 (CAZ-associated structural protein 1)|
          (CAST1) (Cast) (Cytomatrix protein p110)
          Length = 957

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 16/31 (51%), Positives = 17/31 (54%)
 Frame = +1

Query: 4  SPSRSPALPPSTPAGLYGQRRLLAGGGKAPG 96
          SPSRSP LP S      G RR  +GGG   G
Sbjct: 14 SPSRSPRLPRSP---RLGHRRTSSGGGGGTG 41



to top

>ERC2_MOUSE (Q6PH08) ERC protein 2 (CAZ-associated structural protein 1)|
          (CAST1)
          Length = 957

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 16/31 (51%), Positives = 17/31 (54%)
 Frame = +1

Query: 4  SPSRSPALPPSTPAGLYGQRRLLAGGGKAPG 96
          SPSRSP LP S      G RR  +GGG   G
Sbjct: 14 SPSRSPRLPRSP---RLGHRRTSSGGGGGTG 41



to top

>ERC2_HUMAN (O15083) ERC protein 2|
          Length = 957

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 16/31 (51%), Positives = 17/31 (54%)
 Frame = +1

Query: 4  SPSRSPALPPSTPAGLYGQRRLLAGGGKAPG 96
          SPSRSP LP S      G RR  +GGG   G
Sbjct: 14 SPSRSPRLPRSP---RLGHRRTSSGGGGGTG 41



to top

>SF04_HUMAN (Q8IWZ8) Splicing factor 4 (RNA-binding protein RBP)|
          Length = 645

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 4   SPSRSPALPPSTPAGLYGQRRLL 72
           +P+ +P+ PPSTP    G+R LL
Sbjct: 105 APTSAPSAPPSTPTPSAGKRSLL 127



to top

>CCPR_KLULA (Q6CW24) Cytochrome c peroxidase, mitochondrial precursor (EC|
           1.11.1.5) (CCP)
          Length = 346

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +2

Query: 41  RRGCMDS-EDFLPEGGKLPELKLDARQAQGFISFFKKLPKDPRAIRLFDRRDYYTAHGEN 217
           R G +D  ED  PE G+LP+   DA+  + F  F +   +D + + L         H +N
Sbjct: 180 RSGRVDQPEDTTPENGRLPDASKDAKYVRCF--FHRLNFEDRQVVALLGAHALGKTHLKN 237

Query: 218 ATF 226
           + F
Sbjct: 238 SGF 240



to top

>PPRB_MOUSE (Q925J9) Peroxisome proliferator-activated receptor-binding protein|
            (PBP) (PPAR-binding protein) (Thyroid hormone
            receptor-associated protein complex 220 kDa component)
            (Trap220) (Thyroid receptor-interacting protein 2)
            (TRIP-2)
          Length = 1575

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +1

Query: 4    SPSRSPALPPSTPAGLYGQRRLLAGGGKAPGAQARCEASPG 126
            SPS S +  P TP           GG K+PG+  R +  PG
Sbjct: 1021 SPSHSSSNRPFTPP-------TSTGGSKSPGSSGRSQTPPG 1054


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,632,565
Number of Sequences: 219361
Number of extensions: 835815
Number of successful extensions: 2835
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 2715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2826
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top