>LONH1_MAIZE (P93647) Lon protease homolog 1, mitochondrial precursor (EC|
           3.4.21.-)
          Length = 885

 Score =  163 bits (412), Expect = 2e-40
 Identities = 84/116 (72%), Positives = 90/116 (77%)
 Frame = +2

Query: 98  PVELPGRLAILPFRNKVLLPGAIVRIRCTTPSSVKLVEQELWQREDKGLIGVLPVRDSEA 277
           PVELP RLA+LPFRNKVLLPGAIVRIRCT PSSVKLVEQELWQ+E+KGLIGVLPVRDSEA
Sbjct: 5   PVELPSRLAVLPFRNKVLLPGAIVRIRCTNPSSVKLVEQELWQKEEKGLIGVLPVRDSEA 64

Query: 278 AAVGSIXXXXXXXXXXXXXXXXXXASGGELSKQDAKSGKEPIHWHSRGVAARALHL 445
            AVGS+                   S  E SKQD K+GKEPIHWHS+GVAARALHL
Sbjct: 65  TAVGSL-LSPGVGSDSGEGGSKVGGSAVESSKQDTKNGKEPIHWHSKGVAARALHL 119

>LONH1_SPIOL (O04979) Lon protease homolog 1, mitochondrial precursor (EC|
           3.4.21.-)
          Length = 875

 Score =  132 bits (331), Expect = 5e-31
 Identities = 70/116 (60%), Positives = 82/116 (70%), Gaps = 1/116 (0%)
 Frame = +2

Query: 101 VELPGRLAILPFRNKVLLPGAIVRIRCTTPSSVKLVEQELWQREDKGLIGVLPVRD-SEA 277
           VELP RL IL FRNKVLLPGAI+RIRCT+PSSVKLVEQELWQRE+KGLIG++PVRD SE+
Sbjct: 5   VELPSRLGILAFRNKVLLPGAIIRIRCTSPSSVKLVEQELWQREEKGLIGIVPVRDASES 64

Query: 278 AAVGSIXXXXXXXXXXXXXXXXXXASGGELSKQDAKSGKEPIHWHSRGVAARALHL 445
           A+V  +                      +  K D KS +E +HWH+RGVAARALHL
Sbjct: 65  ASVAPVLYPGGGTDSGERNVKSQPGL-SDSRKADGKSQQEAVHWHTRGVAARALHL 119

>LONH1_ARATH (O64948) Lon protease homolog 1, mitochondrial precursor (EC|
           3.4.21.-)
          Length = 888

 Score =  124 bits (310), Expect = 1e-28
 Identities = 66/116 (56%), Positives = 83/116 (71%), Gaps = 1/116 (0%)
 Frame = +2

Query: 101 VELPGRLAILPFRNKVLLPGAIVRIRCTTPSSVKLVEQELWQREDKGLIGVLPVR-DSEA 277
           VELP RLAILPFRNKVLLPGAI+RIRCT+ SSV LVEQELWQ+E+KGLIG+LPVR D+E 
Sbjct: 5   VELPSRLAILPFRNKVLLPGAIIRIRCTSHSSVTLVEQELWQKEEKGLIGILPVRDDAEG 64

Query: 278 AAVGSIXXXXXXXXXXXXXXXXXXASGGELSKQDAKSGKEPIHWHSRGVAARALHL 445
           +++G++                   +  +  K DAK  ++ + WH+RGVAARALHL
Sbjct: 65  SSIGTMINPGAGSDSGERSLKFLVGT-TDAQKSDAKD-QQDLQWHTRGVAARALHL 118

>LON2_MYXXA (P36774) ATP-dependent protease La 2 (EC 3.4.21.53)|
          Length = 826

 Score = 32.7 bits (73), Expect = 0.43
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = +2

Query: 104 ELPGRLAILPFRNKVLLPGAIVRIRCTTPSSVKLVEQELWQREDKGLIGVLPVRDSEAAA 283
           ++P  L ILP RN V  PG ++ +      ++ L++  +    D  +IGV+  R +E   
Sbjct: 27  DIPQVLPILPLRNSVFFPGGVLPLAVGRQKTIALIKDAV---RDDQVIGVVTQRRAEEED 83

Query: 284 VGS 292
            G+
Sbjct: 84  PGA 86

>TROAP_HUMAN (Q12815) Trophinin-associated protein (Tastin) (Trophinin-assisting|
           protein)
          Length = 778

 Score = 30.0 bits (66), Expect = 2.8
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 6/37 (16%)
 Frame = -2

Query: 449 LEGVEL*QQLPGCASEWAPS------RSLHPVCSTLP 357
           LE   L   LP C S+WAP+       S HP+C++ P
Sbjct: 649 LEHRSLESSLPPCCSQWAPATTSLIFSSQHPLCASPP 685

>RECX_DEIRA (Q9RUS2) Regulatory protein recX|
          Length = 204

 Score = 29.6 bits (65), Expect = 3.6
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
 Frame = -2

Query: 377 PVCSTLPQ--KHQATGGLLPLNHRPLQ-----ATGSNQQPQPQSPAREAPQSD 240
           PVC   P   K  ++GG+LP+ +RP +     A+    +P+P+ P     Q +
Sbjct: 2   PVCGRRPWQVKRSSSGGILPVMYRPRRRSSTPASEGEAEPRPRRPKTREEQRE 54

>PCLO_RAT (Q9JKS6) Protein piccolo (Aczonin) (Multidomain presynaptic|
           cytomatrix protein)
          Length = 5085

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 326 PLNHRPLQATGSNQQPQPQSPAREAPQ 246
           P   +P Q T +  QPQP +PA+  PQ
Sbjct: 432 PAKPQPQQPTPAKPQPQPPTPAKPQPQ 458

>SNX15_HUMAN (Q9NRS6) Sorting nexin-15|
          Length = 342

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 4/51 (7%)
 Frame = -2

Query: 392 SRSLH----PVCSTLPQKHQATGGLLPLNHRPLQATGSNQQPQPQSPAREA 252
           SR LH    P+  T P        LLP   R L+       P P SPA+EA
Sbjct: 135 SRDLHILPPPLIPTPPPDDPRLSQLLPAERRGLEELEVPVDPPPSSPAQEA 185

>SMG7_HUMAN (Q92540) Protein SMG7 (SMG-7 homolog) (EST1-like protein C)|
          Length = 1137

 Score = 29.3 bits (64), Expect = 4.7
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -2

Query: 368 STLPQKHQATGGLLPLNHRPLQATGSNQQPQPQSPAREAPQS 243
           S +P   Q   G  P+N  P Q+   +QQP    PA+   QS
Sbjct: 714 SHIPYSQQRPSGPGPMNQGPQQSQPPSQQPLTSLPAQPTAQS 755

>GDBX_WHEAT (P21292) Gamma-gliadin precursor|
          Length = 302

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -2

Query: 365 TLPQKHQATGGLLPLNHRPLQATGSNQQPQPQSPAREAPQS 243
           T+PQ HQ        +H+P Q     QQ  P  P ++ PQ+
Sbjct: 51  TIPQPHQT------FHHQPQQTFPQPQQTYPHQPQQQFPQT 85

>SSBW_PSEPU (Q8VMM4) Single-stranded DNA-binding protein (SSB)|
           (Helix-destabilizing protein)
          Length = 180

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -2

Query: 359 PQKHQATGGLLPLNHRPLQATGSNQQPQPQSPAREAPQ 246
           PQ  Q  G        P    GSNQQP+ Q+P ++ PQ
Sbjct: 115 PQNQQQGGD-------PYNQGGSNQQPRQQAPRQQRPQ 145

>VG1_BPIKE (P03658) Gene I protein|
          Length = 365

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 277 CGCWFDPVAWSGR*FRGRRPPVAWCFWGR 363
           CG WF+   WS    + R+P + WC   R
Sbjct: 90  CGTWFNSRNWSD---KSRQPVIDWCLHAR 115

>CLCN1_HUMAN (P35523) Chloride channel protein, skeletal muscle (Chloride|
           channel protein 1) (ClC-1)
          Length = 988

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = -2

Query: 407 SEWAPSRSLHPVCSTLPQKHQATGGLLPLNHRPLQATGSNQQPQPQSPAREAP 249
           SE  PS +LHP  +T P   +   G LP         G  QQP+   PA + P
Sbjct: 723 SELPPSLALHP-STTAPLSPEEPNGPLP---------GHKQQPEAPEPAGQRP 765

>AMEL_MONDO (Q28462) Amelogenin|
          Length = 202

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -2

Query: 380 HPVCSTLPQKHQATGGLLPLNHRPLQATGSNQQPQPQSPAREAP 249
           H +   L Q+H  +  L P +H P+ A  + Q   PQ P    P
Sbjct: 48  HQIIPVLSQQHSPSHSLPPQHHIPIMA--AQQPAPPQQPVMPVP 89

>MICA1_HUMAN (Q8TDZ2) NEDD9-interacting protein with calponin homology and LIM|
           domains (Molecule interacting with CasL protein 1)
          Length = 1067

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1

Query: 138 RNGSMASRPGSSTGASAMAADALLWCVRRTAGGTGIRVEE 19
           RN         +TG++    + L WC  +TAG  G+ V +
Sbjct: 493 RNNDKTDTGMPATGSAGTQEELLRWCQEQTAGYPGVHVSD 532

>CRT10_YEAST (Q08226) Protein CRT10 (Constitutive RNR transcription regulator|
           10)
          Length = 957

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -2

Query: 401 WAPSRSLHPVCSTLPQKHQATGGLLPLNHRPLQAT 297
           W PSR L+P    LPQ  +     +PL   P Q T
Sbjct: 119 WGPSRLLNPAELLLPQDEKLLVQEIPLEFAPFQYT 153


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,892,307
Number of Sequences: 219361
Number of extensions: 1129960
Number of successful extensions: 3588
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3578
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)